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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name Flowering_GeneExp_v3_median
#download_from http://linkdata.org/work/rdf1s218i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s218i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Flowering:ATGE_8 Flowering:ATGE_29 Flowering:ATGE_31 Flowering:ATGE_32 Flowering:ATGE_33 Flowering:ATGE_34 Flowering:ATGE_35 Flowering:ATGE_36 Flowering:ATGE_37 Flowering:ATGE_39 Flowering:ATGE_40 Flowering:ATGE_41 Flowering:ATGE_42 Flowering:ATGE_43 Flowering:ATGE_45 Flowering:ATGE_46 Flowering:ATGE_47 Flowering:ATGE_48 Flowering:ATGE_49 Flowering:ATGE_50 Flowering:ATGE_51 Flowering:ATGE_52 Flowering:ATGE_53 Flowering:ATGE_54 Flowering:ATGE_55 Flowering:ATGE_56 Flowering:ATGE_57 Flowering:ATGE_58 Flowering:ATGE_59 Flowering:ATGE_73 Flowering:ATGE_92
#object_type_xsd float string string float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 -0.0795 0.1938 0.5153 0.7935 0.7023 0.6240 1.5698 0.1079 0.9111 -0.2203 -0.5538 0.4166 0.7552 -0.5677 -0.2830 -0.3807 0.3459 -0.2923 0.3577 0.1908 0.2304 0.4891 0.6253 0.8359 0.3853 0.8606 0.9971 1.3654 0.5561 0.6731 0.6507
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 -0.0060 -0.2207 -0.1664 -0.0711 0.3656 0.3689 0.0232 1.2204 0.0593 -0.0433 0.3252 -0.0334 -0.3958 -0.2832 0.1903 0.0583 -0.1748 -0.1727 -0.0858 -0.0020 -0.1070 -0.0263 0.3942 -0.1054 -0.2913 -0.0321 0.0775 0.0955 -0.0680 0.0685 -0.0430
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 -0.5368 -0.1451 0.5142 0.7879 0.8761 1.2379 1.0207 0.0411 -0.0066 0.8090 0.4341 1.5698 1.1986 0.9015 -0.6850 -0.4302 1.0856 0.2622 -0.2522 -0.2254 0.2560 0.9348 -0.4853 1.0283 0.4644 0.0905 0.0780 0.0669 0.5477 -1.0792 -0.7318
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 -0.2867 -2.0640 -1.6017 -1.2066 0.2046 -1.0009 -1.3763 2.9970 -1.4706 0.5219 -1.4443 1.5819 0.9475 3.3464 -1.3621 -2.0191 -1.5867 -1.8118 -1.8846 -1.8376 -1.5142 -1.8043 -0.2442 -1.5201 -1.3362 -0.8629 -0.6748 -0.9273 -0.8127 -1.0249 -0.7301
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 0.2345 -0.0467 0.3483 0.5133 0.2563 0.5261 -0.4826 -2.2227 -0.0029 -0.1444 1.2476 -1.3819 -1.1344 -1.8543 0.4178 0.1249 0.3862 -0.3659 -0.1250 0.2441 0.3574 0.1061 0.1111 0.5329 -0.0148 0.1932 0.2296 0.3992 0.2228 -2.3425 0.5537
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 -0.3582 -0.2151 0.2184 0.2970 0.4935 -0.2375 1.9075 0.1043 0.0641 0.0219 0.2019 -1.0640 0.2617 0.6760 0.0738 -0.5226 -0.3756 -0.6105 -0.4335 -0.3614 -0.2733 -0.4115 0.3042 -0.1101 0.0026 -0.1245 0.0319 0.6833 0.0271 -1.5761 0.2882
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 -0.2253 -0.1451 0.3927 0.8437 0.7170 1.2826 0.1500 -1.5305 0.2320 0.5820 1.0934 0.6421 -0.0772 -0.3792 0.5434 0.0782 0.1528 -0.2643 -0.1330 -0.0819 0.0044 -0.0851 0.7719 0.6936 0.7173 0.5692 0.7737 0.7208 0.8627 -4.6546 0.3885
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 0.6130 0.3966 0.2032 0.0848 -0.1141 -0.2275 -0.0453 -0.9059 0.1597 0.0644 -0.2285 0.3300 0.3670 -0.4128 -0.1082 0.4104 0.3888 0.5162 0.6236 0.3010 0.5412 0.2246 -0.2292 0.2305 0.1219 0.2334 0.1027 0.1991 -0.0354 -1.8207 0.0367
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 0.8989 0.6556 0.1740 0.1814 0.4812 -0.3159 1.0942 -0.1238 0.8679 -0.1688 -0.1390 -0.5800 -0.3773 -0.0598 0.5458 0.5618 0.4027 0.8046 0.4237 0.3483 0.5240 0.5504 0.2879 0.2057 -0.0519 0.2740 0.4314 0.1305 0.4940 1.0900 0.2288
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 -2.2491 -2.3657 -1.9298 -1.2191 -0.7908 2.8678 1.3336 -1.7604 -0.5010 0.7882 -1.0478 1.7657 3.0117 0.9858 -0.0676 -2.4653 -2.1115 -2.3574 -2.3876 -2.4448 -2.2720 -2.2957 -0.7193 -0.9976 -1.3351 -1.8490 -1.7614 -1.0349 -0.8899 -1.4344 -1.9346
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 -0.1168 -0.0810 0.3031 0.3551 0.2100 0.6907 0.6527 -0.1937 0.0980 0.0506 0.7548 -0.0297 0.3207 -0.1150 0.1990 -0.1327 0.2303 -0.4277 -0.2218 -0.0275 0.0725 0.0481 0.1710 0.4426 -0.0716 -0.1200 0.0475 0.3170 0.1079 -1.1355 0.0921
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 0.4898 0.3325 0.2277 0.2527 -0.1616 -0.3092 0.0031 -1.2485 -0.1061 -0.5689 0.7059 -1.1039 -0.7826 -1.2276 0.1647 0.0763 0.3376 0.2082 0.2960 0.3956 0.2750 0.0997 -0.3669 0.4778 -0.0649 0.0671 0.0588 0.2943 -0.0457 -0.9356 0.1353
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 -2.0207 -2.1837 -1.9155 -2.0158 -1.8032 -0.4594 -1.9261 -1.9150 -1.9330 0.5693 -1.2981 2.6265 -1.1674 0.3564 -2.0394 -1.9851 -1.8294 -1.9879 -1.7692 -1.9284 -1.6284 -2.0268 -1.9719 -0.4209 -0.8747 -1.2729 -1.4099 -0.3896 0.3942 -0.9657 -1.7478
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:A:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 0.6258 0.4390 0.2360 -0.0224 0.0220 -0.1390 -0.0617 -0.3641 0.3102 -0.1083 -0.0839 0.0890 -0.0874 -0.2418 0.1970 0.4086 0.3935 0.4067 0.4595 0.5266 0.3733 0.3893 -0.1966 0.1660 -0.1481 0.1512 0.0933 -0.0798 -0.0099 -1.5852 0.0845
ATTED:At1g01010.html 0.0424 1.3657 -0.6520 -0.4208 0.2213 1.0735 -0.7141 -0.2969 1.2585 0.4794 0.0947 1.2504 -0.4309 -0.1544 0.5437 -0.3436 -0.4944 -0.1812 -0.2288 -0.3911 -0.6692 -0.5788 0.3283 -0.3391 0.0746 0.2030 0.8276 -0.2519 0.4793 0.9464 -0.6175 1.6181
ATTED:At1g01040.html -0.1965 0.0871 0.4356 0.5160 0.1720 -0.0197 0.1809 0.0963 0.3573 0.0351 -0.5323 0.2467 0.4034 0.0365 0.0326 0.4583 0.5393 0.5034 0.6526 0.6668 0.2553 0.4337 0.1262 0.4652 0.8623 0.4506 0.6573 0.3124 0.5517 -1.4182 -0.3590 -1.1769
ATTED:At2g26570.html 0.4860 -0.2660 -0.3112 -0.1539 -0.4423 0.2463 -0.2553 0.2134 -0.6566 -0.0290 -0.1218 0.8451 0.9778 0.8674 -0.5859 -0.6222 -0.4961 -0.7491 -0.5007 -0.4073 -0.5511 -0.3486 -0.4214 -0.3094 -0.2521 -0.2900 -0.3061 -0.1958 -0.0841 0.8562 -0.1169 0.1651
ATTED:At2g26580.html 1.3417 -1.7490 -0.6183 -0.0483 -0.0305 0.4772 0.0395 -0.6838 -0.0225 0.3053 -1.3783 -0.3775 1.7414 -0.9423 -0.5754 -0.8626 -0.0817 -0.1036 -0.6223 -0.8413 -0.7310 -0.5109 -0.5277 0.2882 -0.4854 -0.5949 -0.1105 -0.2710 -0.2454 -0.6488 -1.0707 -1.5646
* Row count is limited to 100.