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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name Fruit_Seeds_GeneExp_v3_median
#download_from http://linkdata.org/work/rdf1s218i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s218i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Fruit_Seeds:ATGE_76 Fruit_Seeds:ATGE_77 Fruit_Seeds:ATGE_78 Fruit_Seeds:ATGE_79 Fruit_Seeds:ATGE_81 Fruit_Seeds:ATGE_82 Fruit_Seeds:ATGE_83 Fruit_Seeds:ATGE_84
#object_type_xsd float string string float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 -0.5060 -0.8758 -0.6443 -0.4152 -0.4950 -0.5907 -0.2560 -0.1903
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 0.3774 -0.1352 -0.1928 -0.1688 -0.3149 -1.0945 -1.0914 -1.3518
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 0.1709 -0.9997 -1.1780 0.8342 0.6174 -0.0584 0.6470 -0.2064
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 -0.3309 -0.9394 0.5865 1.4921 2.1358 1.2694 1.4862 1.2304
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 0.6369 -0.6293 -0.6943 -1.2044 -1.6544 -2.7064 -2.9003 -2.8675
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 -0.1608 1.0990 1.4524 1.5135 1.2087 0.0158 -0.7121 -1.1679
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 0.8593 0.7808 0.6385 -0.2919 -0.5821 -1.9340 -3.1913 -3.8941
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 -0.3551 -0.7133 -0.7034 -0.6815 -0.6429 0.3519 0.4668 0.6520
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 0.6262 -0.4841 -0.3482 -0.3018 -0.3975 -0.4067 -0.4254 -0.2795
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 -1.1223 -1.9678 -2.5547 -2.4703 -2.5686 -2.0030 -1.6212 -1.5208
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 0.2705 -0.8502 -0.8586 -0.8131 -0.7618 -0.4177 -0.5123 -0.4316
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 0.1839 -0.5111 -0.7035 -1.0504 -1.4143 -1.7185 -1.6034 -1.2950
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 -1.5888 -2.0725 -1.9858 -1.8941 -1.9157 -1.5772 -1.0597 -1.1367
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:A:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 0.0891 -0.1293 -0.2417 -0.0149 0.0357 -0.2365 -0.1002 -0.2210
ATTED:At1g01010.html 0.0424 -0.6735 -0.6969 -0.5762 -0.2091 -0.0945 -0.1645 -0.0680 -0.2632
ATTED:At1g01040.html -0.1965 -0.2797 -0.4879 -0.0529 0.2245 -0.2127 0.0562 -0.5269 -0.4624
ATTED:At2g26570.html 0.4860 -0.4255 -0.3940 -0.1791 0.3716 0.2960 0.1964 0.2377 0.0241
ATTED:At2g26580.html 1.3417 -0.9057 -0.5941 0.0782 0.8918 -0.2803 -0.6154 -0.3082 0.9168
* Row count is limited to 100.