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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name Seedling_GeneExp_v3_median
#download_from http://linkdata.org/work/rdf1s218i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s218i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Seedling:ATGE_1 Seedling:ATGE_2 Seedling:ATGE_3 Seedling:ATGE_4 Seedling:ATGE_5 Seedling:ATGE_6 Seedling:ATGE_7 Seedling:ATGE_87 Seedling:ATGE_96 Seedling:ATGE_97 Seedling:ATGE_100 Seedling:ATGE_101
#object_type_xsd float string string float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 0.2052 -0.7952 -0.3856 0.1725 0.3086 -0.3145 0.6723 0.9026 0.3016 -0.0037 -0.3586 -0.1585
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 0.2238 0.5501 0.5572 -0.1136 0.1159 0.0603 -0.0618 -0.2068 -0.3255 -0.1494 -0.3127 -0.4025
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 0.6518 0.5358 -1.6986 0.3098 0.4303 -0.0006 0.5222 -1.3208 0.3958 0.1716 -0.4340 -0.1226
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 1.2186 2.9508 1.4143 0.8825 -1.4805 2.5616 0.3511 -1.4593 -0.7431 0.4219 -0.1003 0.6145
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 1.0692 -0.3859 -2.1397 1.1023 1.5153 0.5241 1.5763 1.1930 0.6047 0.7426 0.2219 0.0543
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 -0.2086 0.1468 0.1308 0.3141 0.3664 0.2735 0.3593 0.2553 0.2911 0.0279 -0.2283 -0.1228
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 1.2134 -0.1410 -5.6137 0.6142 1.2180 -0.0757 0.9841 1.0978 1.1121 1.1093 1.2176 1.1744
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 -0.4146 0.3521 0.3409 -0.0152 -0.5286 0.4441 -0.1140 -0.3363 -0.5946 -0.3541 -0.3720 -0.3327
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 -0.2635 -0.6669 -0.2280 0.6952 0.1532 0.7632 -0.4743 0.1755 -0.3476 -0.2540 -0.2543 -0.2767
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 2.8191 1.1580 2.2038 1.6337 2.3006 -0.1628 -1.6554 0.1179 2.2376 1.8124 2.9304 2.7241
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 0.7207 -0.6529 -1.8362 0.9144 1.3489 0.0745 1.1760 1.0899 0.2609 0.1309 -0.1673 -0.1728
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 0.4485 -0.3320 -0.6267 1.1945 1.2304 0.7636 1.0794 0.8685 0.4369 0.3899 -0.0475 -0.2110
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 3.1051 -1.1072 -1.4935 -1.4573 -0.2944 -1.9601 -1.6382 -1.0776 4.8289 2.7334 4.6765 3.8209
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:A:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 -0.3979 0.1219 0.5374 0.3640 -0.2015 0.5436 -0.1455 -0.0512 -0.0631 -0.1522 -0.1321 -0.3314
ATTED:At1g01010.html 0.0424 0.0018 0.7865 -0.7817 -0.7470 -0.5062 -0.6440 -0.2727 -0.5620 -0.0661 1.8136 -0.1293
ATTED:At1g01040.html -0.1965 0.3076 -0.0728 -0.5847 -0.6168 -0.1818 0.3255 0.0359 -0.2106 -0.6049 0.3182 -0.3503
ATTED:At2g26570.html 0.4860 -0.1567 -0.2883 -0.5413 0.5949 -0.8119 -0.5634 -0.2596 -0.0395 -0.0645 0.2715 0.0018
ATTED:At2g26580.html 1.3417 -1.4588 -1.6362 0.5287 1.1762 0.2612 -0.0692 0.3358 0.4860 1.3786 -1.4980 0.209
* Row count is limited to 100.