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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name AtGenExpress_ATTED_Root
#download_from http://linkdata.org/work/rdf1s295i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s295i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Root:ATGE_9 Root:ATGE_93 Root:ATGE_94 Root:ATGE_95 Root:ATGE_98 Root:ATGE_99
#object_type_xsd float string string float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 -0.3543 -0.6718 -0.4085 -0.4842 -0.4288 -0.5069
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 0.6316 0.2989 0.0224 0.0813 -0.0985 0.0330
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 -1.2945 -0.8632 -0.8518 -0.8437 -0.7480 -0.7424
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 1.9119 1.7917 1.0242 1.3325 1.3963 1.8666
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 -2.2719 -1.9903 -2.1833 -2.0330 -2.0553 -2.1519
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 0.0704 0.2057 0.0647 0.1510 -0.4651 -0.6235
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 -6.8770 -3.8141 -3.4841 -3.7530 -2.8745 -3.1897
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 0.6715 0.5861 0.4642 0.5425 0.3545 0.5454
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 -0.1017 -0.2334 -0.6966 -0.4504 -0.4917 -0.6132
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 2.7573 -0.0327 0.1046 -0.4229 1.5154 1.0350
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 -2.1371 -1.7741 -1.6508 -1.6473 -1.7698 -1.7715
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 -0.6364 -0.8516 -0.5390 -0.9011 -0.8990 -0.7785
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 -1.5679 1.0549 -0.6086 -0.4787 2.7343 2.1555
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 0.5297 0.2270 0.1560 0.2302 0.2270 0.1684
ATTED:At1g01010.html 1.3657 1.6181 1.5691 1.5646 1.8136 1.6882
ATTED:At1g01040.html 0.0871 -1.1769 -0.0936 -0.2954 0.3182 -0.0551
ATTED:At2g26570.html -0.2660 0.1651 0.4168 0.5582 0.2715 0.2223
ATTED:At2g26580.html -1.7490 -1.5646 -1.5371 -1.3932 -1.4980 -1.6378
* Row count is limited to 100.