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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://atted.jp/browsing/browsing_cis_cis.html
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name Heptamer_elements
#download_from http://linkdata.org/work/rdf1s295i
#namespace cis http://atted.jp/data/cis/
#property motif sequence maxCEG Appropriateposition(± 40 bp) PLACEcorrespondence AssociatedFunction PredictedTF(|r| > 0.5)
#object_type_xsd string float integer integer integer integer
#property_context Assertion Assertion Assertion Assertion Assertion Assertion
cis:AAAACCC.html AAAACCC 0.092 41 4 10
cis:AAAAGTC.html AAAAGTC 0.078 170 1 35
cis:AAAATAT.html AAAATAT 0.07 118 2 8
cis:AAACCCT.html AAACCCT 0.143 20 2 7 11
cis:AAACGCG.html AAACGCG 0.074 149 25
cis:AAACGTG.html AAACGTG 0.066 95 4
cis:AAAGCCC.html AAAGCCC 0.068 78 1 4 8
cis:AAAGTCA.html AAAGTCA 0.076 184 1 36
cis:AAATATC.html AAATATC 0.145 77 1 9
cis:AACACGT.html AACACGT 0.074 94 1 19
cis:AACAGCA.html AACAGCA 0.061 4 3
cis:AACCCTA.html AACCCTA 0.135 20 2 8 10
cis:AACCGAC.html AACCGAC 0.075 26 3 7
cis:AACCGCG.html AACCGCG 0.085 85 34
cis:AACCGTG.html AACCGTG 0.069 113 10
cis:AACCTTC.html AACCTTC 0.067 35 4
cis:AACGCGC.html AACGCGC 0.06 96 20
cis:AACGCGT.html AACGCGT 0.102 127 1 28
cis:AACGTGT.html AACGTGT 0.072 90 6 20
cis:AAGATAA.html AAGATAA 0.061 41 2 23
cis:AAGATAT.html AAGATAT 0.067 50 1 6
cis:AAGCCCA.html AAGCCCA 0.097 84 1 6 9
cis:AAGCGCG.html AAGCGCG 0.067 73 6
cis:AAGGCCC.html AAGGCCC 0.081 84 5 11
cis:AAGTCAA.html AAGTCAA 0.078 125 30
cis:AATAATT.html AATAATT 0.069 112 5 20
cis:AATATCT.html AATATCT 0.136 80 1 9
cis:AATCCCA.html AATCCCA 0.062 8 22
cis:AATGGGC.html AATGGGC 0.09 88 1 3 9
cis:ACACGTG.html ACACGTG 0.109 62 6 12
cis:ACACGTT.html ACACGTT 0.063 33 1 12
cis:ACAGCTG.html ACAGCTG 0.074 144 3
cis:ACATGCA.html ACATGCA 0.06 41 1 15
cis:ACCCCAC.html ACCCCAC 0.062 72 21
cis:ACCCGCG.html ACCCGCG 0.079 9
cis:ACCCTAA.html ACCCTAA 0.106 29 1 6 10
cis:ACCCTAG.html ACCCTAG 0.087 20 4 12
cis:ACCGACA.html ACCGACA 0.071 81 5 1
cis:ACCGACT.html ACCGACT 0.073 43 3 6
cis:ACCGCGT.html ACCGCGT 0.104 98 35
cis:ACCGTGT.html ACCGTGT 0.072 144 7
cis:ACCTACC.html ACCTACC 0.068 29 7
cis:ACCTTAT.html ACCTTAT 0.064 60 23
cis:ACCTTCC.html ACCTTCC 0.064 79 31
cis:ACGCGCT.html ACGCGCT 0.09 111 26
cis:ACGCGGA.html ACGCGGA 0.07 116 1 3 14
cis:ACGCGGT.html ACGCGGT 0.093 141 29
cis:ACGCGTA.html ACGCGTA 0.103 74 27
cis:ACGCGTC.html ACGCGTC 0.072 90 29
cis:ACGCGTT.html ACGCGTT 0.105 96 36
cis:ACGTGGC.html ACGTGGC 0.093 104 23 2 4
cis:ACGTGTA.html ACGTGTA 0.061 82 3 18
cis:ACGTGTC.html ACGTGTC 0.113 84 10 16
cis:ACTCCGC.html ACTCCGC 0.079 117 3
cis:ACTCCTG.html ACTCCTG 0.063 56 9
cis:ACTTCCT.html ACTTCCT 0.063 96 24
cis:ACTTTGA.html ACTTTGA 0.063 92 1 12
cis:AGACACG.html AGACACG 0.072 112 1 16
cis:AGATAAG.html AGATAAG 0.085 38 3 30
cis:AGATATT.html AGATATT 0.105 28 2 9
cis:AGCCACA.html AGCCACA 0.061 53 1 31
cis:AGCCCAA.html AGCCCAA 0.072 76 1 3 10
cis:AGCCCAT.html AGCCCAT 0.087 92 6 8
cis:AGCCGCC.html AGCCGCC 0.064 123 4 6
cis:AGCTGTT.html AGCTGTT 0.068 127 23
cis:AGGCCCA.html AGGCCCA 0.111 86 6 10
cis:AGGGTTT.html AGGGTTT 0.099 33 6 9
cis:AGTCAAC.html AGTCAAC 0.07 80 1 15
cis:ATAAATA.html ATAAATA 0.088 17 5 5
cis:ATACGCG.html ATACGCG 0.06 39 26
cis:ATATAAA.html ATATAAA 0.087 2 2 4
cis:ATATATA.html ATATATA 0.103 26 1 15
cis:ATATCTA.html ATATCTA 0.078 89 8
cis:ATATCTT.html ATATCTT 0.074 79 7
cis:ATCCACA.html ATCCACA 0.062 53 29
cis:ATCTTAT.html ATCTTAT 0.068 23 1 25
cis:ATGCATG.html ATGCATG 0.079 56 2 1
cis:ATGGGCC.html ATGGGCC 0.086 87 3 4 10
cis:ATGGGCT.html ATGGGCT 0.083 100 1 3 10
cis:ATGTCGG.html ATGTCGG 0.074 111 6
cis:ATTGGGC.html ATTGGGC 0.093 99 5 10
cis:CAACCTC.html CAACCTC 0.064 12
cis:CAAGCGC.html CAAGCGC 0.068 23 1
cis:CACACGT.html CACACGT 0.065 70 2 7
cis:CACCGAC.html CACCGAC 0.067 198 3 1
cis:CACGCGG.html CACGCGG 0.068 40 1 23
cis:CACGCGT.html CACGCGT 0.066 74 13
cis:CACGTAC.html CACGTAC 0.062 191 4 1
cis:CACGTGG.html CACGTGG 0.093 112 16 2 5
* Row count is limited to 100.