Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full

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Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant	This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements	A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.

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File Name
AtGenExpress_ATTED_Flowering			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	4.4MB
Table Data (Excel)	2013.1.17	7.8MB
RDF (Turtle)	2013.1.17	37.5MB
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AtGenExpress_ATTED_Fruit_Seeds			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	2.5MB
Table Data (Excel)	2013.1.17	4.2MB
RDF (Turtle)	2013.1.17	14.0MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Leaf			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	3.2MB
Table Data (Excel)	2013.1.17	5.4MB
RDF (Turtle)	2013.1.17	22.2MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Root			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	2.4MB
Table Data (Excel)	2013.1.17	3.9MB
RDF (Turtle)	2013.1.17	12.3MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Seedling			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	2.9MB
Table Data (Excel)	2013.1.17	4.8MB
RDF (Turtle)	2013.1.17	18.2MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Stem			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	2.1MB
Table Data (Excel)	2013.1.17	3.3MB
RDF (Turtle)	2013.1.17	9.2MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Whole_Plant			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	2.1MB
Table Data (Excel)	2013.1.17	3.3MB
RDF (Turtle)	2013.1.17	9.2MB
		その他の形式のAPIリストを表示
Heptamer_elements			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.10.10	12.4KB
Table Data (Excel)	2012.10.10	51.5KB
RDF (Turtle)	2012.10.10	134.9KB
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PPDB_position			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.1.17	518.5KB
Table Data (Excel)	2013.1.17	1.6MB
RDF (Turtle)	2013.1.17	1.3MB
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Contributor Send Message	GenoCon
Collaborators
Website	http://atted.jp/ http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/171... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	2787
Created date	Oct 10, 2012
Last update date	Mar 6, 2013