GenoCon

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering_median	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median	This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements	A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.

value

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#LINK
#lang	en
#attribution_name	GenoCon
#attribution_url	http://promotercad.org
#license	http://creativecommons.org/licenses/by/3.0/deed.ja
#file_name	AtGenExpress_ATTED_Fruit_Seeds_median
#download_from	http://linkdata.org/work/rdf1s584i
#namespace	ATTED	http://atted.jp/data/locus/
#namespace	HeptamerElement	http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace	PLACE	http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace	PPDB	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	TAIR	http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property	motif	motif sequence	motif position	CEG	Origin of baseline sequence	label:Col-0_sil3	label:Col-0_sil4	label:Col-0_sil5	label:Col-0_seed6	label:Col-0_seed7	label:Col-0_seed8	label:Col-0_seed9	label:Col-0_seed10
#object_type_xsd	string	string	string	string	string	string	string	string	string	string	string	string	string
#property_context	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion
ATTED:At1g01030.html	-	-	-	-	TAIR9	-0.6079	-0.8453	-0.6802	-0.4588	-0.5024	-0.5940	-0.2260	-0.1563
ATTED:At1g01050.html	HeptamerElement:ATATAAA	ATATAAA	65	0.08	PPDB	0.3775	-0.1404	-0.2043	-0.1973	-0.2915	-1.0883	-1.0336	-1.3381
ATTED:At1g01060.html	HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG	ACGTGTC \| CACGTGT \| CCACGTG	168 \| 169 \| 170	0.09 \| 0.10 \| 0.07	PPDB	0.1904	-0.9559	-1.1869	0.8397	0.6380	-0.0356	0.6261	-0.1885
ATTED:At1g01070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:AAAATAT \| HeptamerElement:AAAATAT	ATAAATA \| TATAAAT \| AAAATAT \| AAAATAT	113 \| 114 \| 183 \| 524	0.08 \| 0.10 \| 0.07 \| 0.07	PPDB	-0.2894	-0.9726	0.6279	1.5077	2.1773	1.2868	1.3669	1.2065
ATTED:At1g01080.html	HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	ATGGGCC \| AATGGGC	287 \| 288	0.08 \| 0.09	PPDB	0.5845	-0.6192	-0.7352	-1.1442	-1.6802	-2.6401	-3.0621	-2.8878
ATTED:At1g01090.html	HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAA \| ATATATA \| TATATAT \| ATATATA	43 \| 44 \| 45 \| 46	0.11 \| 0.10 \| 0.10 \| 0.10	PPDB	-0.1680	1.0779	1.4109	1.4926	1.1889	0.0211	-0.6828	-1.1754
ATTED:At1g01100.html	HeptamerElement:TATAAAC \| HeptamerElement:GGCCCAT \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGTCAA \| HeptamerElement:AAAGTCA	TATAAAC \| GGCCCAT \| GGGCCTA \| TGGGCCT \| ATGGGCC \| AATGGGC \| AGGCCCA \| AAGTCAA \| AAAGTCA	33 \| 61 \| 82 \| 83 \| 84 \| 85 \| 123 \| 182 \| 183	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.09 \| 0.08 \| 0.07 \| 0.07	PPDB	0.3057	0.1433	0.2166	0.4404	0.3742	-0.0615	-0.2605	-0.2949
ATTED:At1g01110.html	-	-	-	-	PPDB	-0.3335	-0.8062	-0.6954	-0.3573	-0.5354	-0.4909	-0.4411	-0.3485
ATTED:At1g01130.html	HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCAAT	AAGCCCA \| AAAGCCC \| GCCCAAT	36 \| 37 \| 86	0.07 \| 0.06 \| 0.07	PPDB	0.2071	0.0587	0.1605	0.4950	0.1015	-0.3451	-0.5109	-0.3524
ATTED:At1g01140.html	HeptamerElement:ACGTGGC \| HeptamerElement:ACGCGGA	ACGTGGC \| ACGCGGA	78 \| 113	0.07 \| 0.07	PPDB	2.3017	2.0615	2.2302	1.1984	0.5511	-2.4381	-3.5326	-3.5711
ATTED:At1g01150.html	HeptamerElement:AAACCCT \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC	AAACCCT \| AAACCCT \| TAAACCC	382 \| 407 \| 408	0.14 \| 0.14 \| 0.10	TAIR9	-0.1773	-0.0844	-0.1349	0.0165	0.0614	-0.0704	0.2373	0.2729
ATTED:At1g01160.html	HeptamerElement:GGCCCAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:GGGCCTT	GGCCCAA \| GGCCCAA \| AGGCCCA \| GGGCCTT	166 \| 193 \| 194 \| 212	0.07 \| 0.07 \| 0.07 \| 0.06	PPDB	0.0237	-0.0003	0.0224	0.4205	0.5350	0.6893	0.7922	0.7815
ATTED:At1g01170.html	HeptamerElement:GATAAGA \| HeptamerElement:AGATAAG \| HeptamerElement:TTATCCA \| HeptamerElement:GCCCATT	GATAAGA \| AGATAAG \| TTATCCA \| GCCCATT	18 \| 19 \| 38 \| 64	0.06 \| 0.06 \| 0.09 \| 0.10	PPDB	0.4834	-0.2979	0.0319	0.2281	0.4708	2.0614	2.2304	2.2197
ATTED:At1g01200.html	HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA	ATATAAA \| ATATAAA \| ATATAAA	38 \| 298 \| 322	0.08 \| 0.08 \| 0.08	TAIR9	0.1094	-0.6232	-0.7394	-0.3135	-0.4565	-0.1488	0.1617	0.0949
ATTED:At1g01220.html	HeptamerElement:CTCCAGA \| HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT	CTCCAGA \| TGACTTT \| TTGACTT \| TTTGACT	43 \| 108 \| 109 \| 110	0.06 \| 0.06 \| 0.07 \| 0.07	TAIR9	-0.3601	-0.4747	-0.5529	-1.1189	-1.4895	-2.0981	-2.0196	-2.3057
ATTED:At1g01225.html	HeptamerElement:TCTCTAG	TCTCTAG	95	0.06	TAIR9	0.1411	1.0336	1.8454	2.7835	2.8452	1.8367	1.2447	1.1104
ATTED:At1g01230.html	HeptamerElement:AAATATC	AAATATC	43	0.13	PPDB	0.1632	0.3220	0.3913	0.9757	1.1760	1.3178	1.6045	1.5644
ATTED:At1g01240.html	HeptamerElement:CAGCTGT \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:ACACGTG	CAGCTGT \| CACGTGT \| ACACGTG \| CACGTGT \| ACACGTG \| ACACGTG	117 \| 132 \| 133 \| 477 \| 478 \| 518	0.07 \| 0.11 \| 0.10 \| 0.11 \| 0.10 \| 0.10	PPDB	0.2398	0.5217	0.8601	1.4198	1.8357	2.5543	2.5484	2.5199
ATTED:At1g01280.html	HeptamerElement:TATATAT	TATATAT	39	0.10	TAIR9	-0.3752	-0.3898	-0.3185	-0.4336	-0.1947	-0.1013	-0.1079	-0.0929
ATTED:At1g01290.html	HeptamerElement:AACCCTA	AACCCTA	32	0.13	TAIR9	-0.0377	-0.2842	-0.0050	-0.0749	-0.4719	-0.1175	-0.6953	-0.7244
ATTED:At1g01300.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT \| HeptamerElement:TTATCCA	GATATTT \| AGATATT \| TTATCCA	128 \| 129 \| 177	0.10 \| 0.10 \| 0.06	PPDB	0.6516	-0.9042	-0.4847	0.8391	0.7026	0.3001	0.0257	-0.1064
ATTED:At1g01310.html	HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:CATGCAT \| HeptamerElement:CCATGCA	TGACTTT \| TTGACTT \| TTTGACT \| CATGCAT \| CCATGCA	52 \| 53 \| 54 \| 60 \| 61	0.06 \| 0.07 \| 0.06 \| 0.06 \| 0.07	TAIR9	2.9040	-0.1003	-0.1529	-0.3688	-0.3994	-0.2278	-0.3159	-0.1709
ATTED:At1g01320.html	-	-	-	-	PPDB	-0.5275	-0.3119	-0.5313	-1.3813	-1.8180	-2.2487	-2.5046	-2.5284
ATTED:At1g01430.html	HeptamerElement:CATGCAA \| HeptamerElement:CCGACAT \| HeptamerElement:AATATCT	CATGCAA \| CCGACAT \| AATATCT	150 \| 191 \| 223	0.08 \| 0.06 \| 0.07	PPDB	0.6882	0.5441	0.6659	0.0307	-0.6304	-1.4086	-1.6499	-1.9283
ATTED:At1g01440.html	-	-	-	-	PPDB	-0.4839	-0.2857	-0.0112	-0.7320	-0.9174	-0.5198	-0.6371	-0.7947
ATTED:At1g01470.html	HeptamerElement:AAACCCT \| HeptamerElement:AAAACCC \| HeptamerElement:GACACGT \| HeptamerElement:AGACACG \| HeptamerElement:AAATATC	AAACCCT \| AAAACCC \| GACACGT \| AGACACG \| AAATATC	115 \| 116 \| 152 \| 153 \| 233	0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.07	PPDB	1.1780	1.8545	2.2076	1.5626	2.2754	2.9028	3.0769	3.1097
ATTED:At1g01480.html	HeptamerElement:TATATAA \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:CTATATA	TATATAA \| ATATAAA \| TATATAA \| CTATATA	27 \| 331 \| 332 \| 333	0.10 \| 0.08 \| 0.10 \| 0.13	PPDB	1.0789	-0.0585	-0.2138	0.0642	2.4103	3.8093	4.0046	3.8985
ATTED:At1g01490.html	HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT	CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT	7 \| 8 \| 75 \| 93 \| 95 \| 97 \| 99 \| 152 \| 153 \| 155 \| 157 \| 159 \| 161	0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	-0.6078	-0.7364	-0.0804	0.6379	0.7196	0.8529	0.9370	0.5106
ATTED:At1g01500.html	HeptamerElement:AAACCCT \| HeptamerElement:AATATCT \| HeptamerElement:AAATATC \| HeptamerElement:ACACGTG	AAACCCT \| AATATCT \| AAATATC \| ACACGTG	5 \| 13 \| 14 \| 136	0.14 \| 0.11 \| 0.11 \| 0.08	PPDB	-0.0928	0.4002	0.5011	0.2052	0.3979	0.0505	0.6242	0.5063
ATTED:At1g01510.html	HeptamerElement:TCACTCC \| HeptamerElement:CCCTAAA \| HeptamerElement:ACCCTAA \| HeptamerElement:AACCCTA \| HeptamerElement:TTGGGCC	TCACTCC \| CCCTAAA \| ACCCTAA \| AACCCTA \| TTGGGCC	12 \| 44 \| 45 \| 46 \| 111	0.07 \| 0.08 \| 0.10 \| 0.13 \| 0.09	PPDB	0.0459	0.0806	0.1811	0.4876	0.2783	-1.0002	-1.4707	-1.6066
ATTED:At1g01520.html	HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG	CACGTGT \| ACACGTG	64 \| 65	0.08 \| 0.08	TAIR9	-0.2404	-0.1054	-0.3204	-0.1453	-0.1318	-0.2003	0.1173	0.0441
ATTED:At1g01540.html	HeptamerElement:CATGCAA \| HeptamerElement:CCACACA	CATGCAA \| CCACACA	38 \| 43	0.08 \| 0.07	PPDB	-0.2509	-0.2150	0.0657	-0.1443	-0.2623	-0.5544	-0.6266	-0.8404
ATTED:At1g01550.html	HeptamerElement:CGTCACA	CGTCACA	107	0.06	PPDB	-0.2049	0.1717	0.1866	0.0285	0.2408	0.5395	0.5652	0.6398
ATTED:At1g01560.html	-	-	-	-	PPDB	-0.4210	-1.5420	-1.3215	-1.4510	-1.2822	-0.3425	-0.0616	0.3348
ATTED:At1g01600.html	HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA \| HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA	TATAAAT \| CTATAAA \| CCTATAA \| TATAAAT \| CTATAAA \| CCTATAA	27 \| 28 \| 29 \| 524 \| 525 \| 526	0.10 \| 0.09 \| 0.07 \| 0.10 \| 0.09 \| 0.07	PPDB	1.3506	-0.8494	-1.0435	-0.9232	-0.5398	-0.7666	-1.0691	-1.1912
ATTED:At1g01610.html	HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:AAAACCC \| HeptamerElement:TAAAACC	CTCTCTT \| CTCTCTT \| CTCTCTT \| AAAACCC \| TAAAACC	24 \| 34 \| 52 \| 71 \| 72	0.06 \| 0.06 \| 0.06 \| 0.09 \| 0.06	PPDB	1.1568	-0.2677	-0.7093	1.1522	1.6325	0.0590	-0.5487	-0.9936
ATTED:At1g01620.html	HeptamerElement:TTATCCA	TTATCCA	135	0.09	PPDB	0.6036	-0.3655	0.1235	-0.0821	-0.8338	-2.7705	-3.7544	-4.7185
ATTED:At1g01630.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT	83 \| 84 \| 85 \| 86 \| 103	0.07 \| 0.07 \| 0.10 \| 0.08 \| 0.07	PPDB	-0.5116	-0.4722	-0.5106	-1.0390	-1.4040	-1.9550	-2.4695	-2.8892
ATTED:At1g01650.html	-	-	-	-	PPDB	0.4619	-0.1777	-0.2491	0.0297	0.3986	1.3488	1.7111	1.7994
ATTED:At1g01670.html	HeptamerElement:ACGTGTC	ACGTGTC	64	0.10	PPDB	0.4814	0.1237	-0.1016	-0.1341	-0.1494	-0.2395	-0.0185	-0.0707
ATTED:At1g01710.html	HeptamerElement:ACACGTG	ACACGTG	93	0.09	PPDB	0.1011	0.0653	-0.1552	-0.4452	-0.3728	0.5332	0.7650	0.7045
ATTED:At1g01720.html	HeptamerElement:TATATAA \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:GACACGT \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC	TATATAA \| CGTGTCC \| ACGTGTC \| CACGTGT \| ACACGTG \| GACACGT \| TCTAGAA \| TTCTAGA \| CACGTGT \| CCACGTG \| CGTGTCC \| ACGTGTC	27 \| 46 \| 47 \| 48 \| 49 \| 50 \| 80 \| 81 \| 89 \| 90 \| 113 \| 114	0.11 \| 0.06 \| 0.09 \| 0.11 \| 0.09 \| 0.08 \| 0.14 \| 0.10 \| 0.11 \| 0.07 \| 0.06 \| 0.09	PPDB	-0.1579	0.1240	-0.3497	0.6526	1.8720	2.9858	3.4926	3.4171
ATTED:At1g01730.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:ATGGGCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| ATGGGCC	96 \| 97 \| 98 \| 99 \| 110	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.08	PPDB	-0.1177	0.2200	0.2334	0.0615	-0.0180	0.4135	0.9026	1.0301
ATTED:At1g01740.html	-	-	-	-	TAIR9	-0.2560	-0.4609	-0.4106	-0.3600	-0.5684	-0.7261	-0.6125	-0.2983
ATTED:At1g01770.html	HeptamerElement:ATATATA \| HeptamerElement:TATATAT	ATATATA \| TATATAT	57 \| 58	0.09 \| 0.09	PPDB	-0.1862	-0.2205	-0.2776	-0.1083	-0.0525	0.9955	0.7447	1.0679
ATTED:At1g01790.html	-	-	-	-	PPDB	-0.2168	-0.2545	-0.7445	-1.7098	-1.9945	-3.1045	-2.8747	-3.1095
ATTED:At1g01820.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	33 \| 34	0.09 \| 0.09	PPDB	-0.7267	-0.4710	-0.3078	-0.2376	-0.1380	0.4033	0.5300	0.7393
ATTED:At1g01840.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC	51 \| 52 \| 53 \| 54 \| 71 \| 72 \| 73 \| 74	0.06 \| 0.08 \| 0.10 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	0.2679	0.2430	0.1139	0.0431	-0.0144	0.7595	0.6446	0.9820
ATTED:At1g01860.html	-	-	-	-	PPDB	-0.3130	-0.3068	-0.3407	-0.2409	-0.3676	-0.4459	-0.4287	-0.3353
ATTED:At1g01900.html	HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAT \| ATATATA \| TATATAT \| ATATATA \| TATATAT \| ATATATA	46 \| 47 \| 48 \| 49 \| 113 \| 236	0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	PPDB	0.5941	3.4938	4.0391	3.5322	3.2770	0.8424	0.3872	-0.4733
ATTED:At1g01920.html	HeptamerElement:TTAAACC \| HeptamerElement:AAAACCC \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAACCC	TTAAACC \| AAAACCC \| AAGCCCA \| AAAGCCC \| GCCCATA \| AGCCCAT \| AAGCCCA \| AAAACCC	4 \| 23 \| 73 \| 74 \| 83 \| 84 \| 85 \| 405	0.07 \| 0.09 \| 0.09 \| 0.06 \| 0.07 \| 0.08 \| 0.09 \| 0.09	PPDB	-0.0888	-0.5692	-0.9813	-0.5459	-0.5724	-0.3714	-0.0550	-0.1417
ATTED:At1g01930.html	HeptamerElement:ATGGGCC \| HeptamerElement:TATGGGC \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TATTGGG \| HeptamerElement:GCCGCCT	ATGGGCC \| TATGGGC \| GGGCCTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TATTGGG \| GCCGCCT	84 \| 85 \| 93 \| 94 \| 95 \| 96 \| 97 \| 109	0.08 \| 0.06 \| 0.06 \| 0.10 \| 0.09 \| 0.09 \| 0.06 \| 0.07	PPDB	-0.1268	-0.1020	-0.2253	-0.4765	-0.4008	0.1875	-0.0443	0.1519
ATTED:At1g01940.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCATA \| GGCCCAT	111 \| 112 \| 113 \| 114 \| 122 \| 123	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.07 \| 0.10	PPDB	-0.0980	0.1020	0.0106	-0.2501	-0.0309	-0.5820	-0.6676	-0.8500
ATTED:At1g01950.html	HeptamerElement:AAAATAT \| HeptamerElement:CTCTCTT	AAAATAT \| CTCTCTT	20 \| 169	0.07 \| 0.06	PPDB	-0.4853	0.1048	0.2333	0.1593	0.1115	-0.3481	-0.6064	-0.7691
ATTED:At1g01970.html	HeptamerElement:TCTCTAG \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	TCTCTAG \| GCCCATA \| GGCCCAT \| AGGCCCA \| AAGGCCC \| GCCCAAT \| GGCCCAA \| AGGCCCA \| ATGGGCC \| AATGGGC	104 \| 120 \| 121 \| 122 \| 123 \| 138 \| 139 \| 140 \| 160 \| 161	0.06 \| 0.07 \| 0.10 \| 0.10 \| 0.08 \| 0.07 \| 0.07 \| 0.10 \| 0.07 \| 0.07	PPDB	0.3179	0.3062	0.1271	-0.0238	0.1118	0.9885	1.1687	1.0020
ATTED:At1g01990.html	HeptamerElement:CTCTCTT \| HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT	CTCTCTT \| CCCATTA \| GCCCATT \| AGCCCAT \| TGGGCTT \| TGGGCTT \| ATGGGCT	37 \| 61 \| 62 \| 63 \| 74 \| 123 \| 124	0.06 \| 0.07 \| 0.10 \| 0.09 \| 0.06 \| 0.06 \| 0.06	PPDB	-0.1376	0.1657	0.2443	0.4353	0.4891	0.9965	1.1366	1.2344
ATTED:At1g02020.html	HeptamerElement:TGCCGAC	TGCCGAC	118	0.08	PPDB	-0.1669	0.3192	0.4381	0.4786	0.3715	0.6159	0.9456	0.9031
ATTED:At1g02050.html	-	-	-	-	TAIR9	-0.7676	-0.7270	-0.4544	-0.4327	-0.6158	0.1356	0.3633	0.3190
ATTED:At1g02060.html	HeptamerElement:AGGGTTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TCTAGAA \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:AGGGTTT	AGGGTTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| GCCCATT \| AGCCCAT \| TCTAGAA \| GGGCCTA \| TGGGCCT \| TTGGGCC \| ATTGGGC \| AGGGTTT	12 \| 44 \| 45 \| 46 \| 56 \| 57 \| 72 \| 90 \| 91 \| 92 \| 93 \| 269	0.10 \| 0.09 \| 0.08 \| 0.08 \| 0.10 \| 0.08 \| 0.11 \| 0.06 \| 0.09 \| 0.08 \| 0.08 \| 0.10	PPDB	-0.6669	-0.3315	-0.2469	-0.2580	0.0014	-0.2377	0.0018	-0.0320
ATTED:At1g02070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	ATAAATA \| TATAAAT \| ATATAAA \| TATATAA \| ATATATA \| TATATAT \| ATATATA \| ATATATA \| TATATAT \| ATATATA	6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12 \| 28 \| 29 \| 30	0.09 \| 0.10 \| 0.09 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	TAIR9	-0.3057	-0.5101	-0.7964	-0.5734	-0.4313	-0.3546	-0.4219	-0.3678
ATTED:At1g02080.html	HeptamerElement:AACCCTA	AACCCTA	436	0.10	PPDB	-0.3043	0.0877	-0.0837	-0.0267	0.0179	0.2238	0.2557	0.2677
ATTED:At1g02090.html	HeptamerElement:ATATAAA \| HeptamerElement:GTCGGTC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:CGCGGTT \| HeptamerElement:ACGCGGT \| HeptamerElement:AGCCCAA	ATATAAA \| GTCGGTC \| TCTAGAA \| TTCTAGA \| GCCCAAT \| AGCCCAA \| CGCGGTT \| ACGCGGT \| AGCCCAA	26 \| 50 \| 64 \| 65 \| 84 \| 85 \| 139 \| 140 \| 492	0.09 \| 0.06 \| 0.12 \| 0.09 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	-0.1701	0.1338	-0.0108	-0.0385	-0.0680	-0.0197	0.1359	0.1884
ATTED:At1g02100.html	HeptamerElement:TTGGGCT \| HeptamerElement:ATTGGGC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CTTCTAG	TTGGGCT \| ATTGGGC \| TCTAGAA \| TTCTAGA \| CTTCTAG	138 \| 139 \| 158 \| 159 \| 160	0.07 \| 0.08 \| 0.10 \| 0.10 \| 0.08	PPDB	-0.6297	-0.6209	-0.6618	-0.6858	-0.6627	-0.3780	-0.4629	-0.4145
ATTED:At1g02120.html	HeptamerElement:GGCCCAA	GGCCCAA	176	0.07	TAIR9	-0.1335	-0.1593	-0.5229	-0.8111	-0.5293	-0.2462	-0.1084	-0.1693
ATTED:At1g02130.html	HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC	GGCCCAA \| AGGCCCA \| AAGGCCC \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TGGGCCT \| TTGGGCC \| ATTGGGC	52 \| 53 \| 54 \| 79 \| 80 \| 81 \| 190 \| 191 \| 192	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.08 \| 0.09 \| 0.08 \| 0.08	PPDB	0.0164	0.0318	0.1038	-0.1081	-0.3004	-0.4425	-0.3556	-0.4011
ATTED:At1g02140.html	HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:GTCGGCA	CCCATTA \| GCCCATT \| AGCCCAT \| AAGCCCA \| GCCCAAT \| GGCCCAA \| GGGCCTT \| TGGGCCT \| GTCGGCA	64 \| 65 \| 66 \| 67 \| 78 \| 79 \| 112 \| 113 \| 198	0.06 \| 0.09 \| 0.07 \| 0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.10 \| 0.06	PPDB	-0.0673	-0.0238	0.1010	0.3650	0.4206	0.2340	0.1386	0.3600
ATTED:At1g02160.html	HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:AAGGCCC \| HeptamerElement:TTGGGCC \| HeptamerElement:AGGCCCA	GGCCCAT \| AGGCCCA \| AAGGCCC \| TATATAA \| ATATATA \| AAGGCCC \| TTGGGCC \| AGGCCCA	8 \| 9 \| 10 \| 31 \| 32 \| 47 \| 64 \| 538	0.09 \| 0.10 \| 0.08 \| 0.10 \| 0.08 \| 0.08 \| 0.09 \| 0.10	PPDB	0.3900	-0.0534	0.1025	0.5777	0.7172	1.7586	1.3375	1.6383
ATTED:At1g02180.html	HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:AGCCCAA	GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC \| AGCCCAA	69 \| 70 \| 71 \| 72 \| 88	0.07 \| 0.07 \| 0.09 \| 0.06 \| 0.07	PPDB	0.5719	-0.0927	-0.1121	0.3584	0.0613	-0.3806	-0.6102	-0.4117
ATTED:At1g02190.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:CTCTATA	TATATAA \| CTATATA \| TCTATAT \| CTCTATA	28 \| 29 \| 30 \| 31	0.11 \| 0.13 \| 0.10 \| 0.10	PPDB	1.9188	-1.7482	-1.6382	-1.7904	-1.6775	-1.6403	-1.8014	-1.4128
ATTED:At1g02205.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TATAAAC \| HeptamerElement:ATATAAA \| HeptamerElement:ATATCTA	TATATAA \| CTATATA \| TATAAAC \| ATATAAA \| ATATCTA	34 \| 35 \| 46 \| 47 \| 70	0.11 \| 0.13 \| 0.07 \| 0.08 \| 0.06	PPDB	2.4222	1.1800	0.1697	-3.7306	-3.6095	-3.2043	-3.0405	-2.7867
ATTED:At1g02260.html	HeptamerElement:CGTGGCA \| HeptamerElement:ACGTGGC	CGTGGCA \| ACGTGGC	46 \| 47	0.08 \| 0.09	PPDB	0.1449	-0.3898	-0.4279	0.0027	0.0688	-0.2164	-0.5763	-0.3812
ATTED:At1g02270.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	126 \| 127	0.09 \| 0.09	PPDB	-0.3796	0.3338	0.3130	-0.3355	0.2045	-0.0409	-0.1589	-0.2324
ATTED:At1g02280.html	HeptamerElement:GATAAGG	GATAAGG	15	0.07	PPDB	0.4117	-0.0825	-0.1226	-0.0473	-0.3161	-0.1466	-0.1364	0.0775
ATTED:At1g02310.html	HeptamerElement:CCACACA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA	CCACACA \| TATATAA \| ATATATA \| TATATAT \| ACGCGTT \| TATATAA \| ATATATA	25 \| 34 \| 35 \| 36 \| 131 \| 541 \| 542	0.06 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.11 \| 0.10	PPDB	0.5832	0.3560	1.3073	2.7480	3.3001	4.2165	3.4649	3.9001
ATTED:At1g02330.html	HeptamerElement:GGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:TGGGCCT	GGCCCAT \| TGGGCTT \| ATGGGCT \| AATGGGC \| ATGGGCT \| AATGGGC \| TGGGCCT	90 \| 105 \| 106 \| 107 \| 179 \| 180 \| 199	0.08 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	0.0354	-0.0306	0.0892	0.0526	0.2130	0.0211	0.0721	-0.2384
ATTED:At1g02340.html	HeptamerElement:CCACACA	CCACACA	114	0.06	PPDB	1.0990	0.2321	0.4325	0.2234	0.6567	-0.3104	0.5940	0.0577
ATTED:At1g02360.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:AACGCGT \| HeptamerElement:TCTATAT	TATATAA \| CTATATA \| TCTATAT \| ACGCGTT \| AACGCGT \| TCTATAT	30 \| 31 \| 32 \| 52 \| 53 \| 416	0.11 \| 0.13 \| 0.10 \| 0.10 \| 0.07 \| 0.10	PPDB	-1.0378	-1.1898	-1.1286	-0.7678	-0.5592	-0.3650	-0.3452	-0.2849
ATTED:At1g02370.html	HeptamerElement:AACCCTA \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC \| HeptamerElement:TTAAACC	AACCCTA \| AAACCCT \| TAAACCC \| TTAAACC	31 \| 32 \| 33 \| 34	0.11 \| 0.12 \| 0.08 \| 0.06	PPDB	-0.3057	-0.3158	-0.3860	-0.0985	0.1022	-0.5475	-0.4272	-0.2130
ATTED:At1g02390.html	HeptamerElement:TATATAA \| HeptamerElement:AAATATC \| HeptamerElement:CATGCAA \| HeptamerElement:ACGCGTA \| HeptamerElement:GACGCGT \| HeptamerElement:AAATATC	TATATAA \| AAATATC \| CATGCAA \| ACGCGTA \| GACGCGT \| AAATATC	28 \| 71 \| 122 \| 172 \| 173 \| 180	0.11 \| 0.07 \| 0.07 \| 0.10 \| 0.06 \| 0.07	PPDB	2.0071	1.6260	2.1131	2.6903	1.5579	1.0703	0.4047	1.2895
ATTED:At1g02400.html	HeptamerElement:AATAATT \| HeptamerElement:AATAATT	AATAATT \| AATAATT	236 \| 332	0.06 \| 0.06	PPDB	-0.6875	0.7100	-0.3259	-0.7326	-0.5003	0.7868	1.6454	1.4397
ATTED:At1g02410.html	HeptamerElement:TTGACTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT	TTGACTT \| TTGACTT \| TTTGACT \| AATAATT \| TGGGCTT \| TGGGCTT \| AATAATT \| TGGGCTT	40 \| 48 \| 49 \| 113 \| 149 \| 173 \| 307 \| 412	0.08 \| 0.08 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06	PPDB	-0.1388	-0.0063	0.1123	0.0426	-0.0348	-0.0993	-0.4020	-0.3535
ATTED:At1g02450.html	HeptamerElement:AAATATC \| HeptamerElement:AAATATC	AAATATC \| AAATATC	165 \| 187	0.07 \| 0.07	PPDB	1.4672	-1.4120	-1.7550	-1.3790	-1.3775	-0.8209	-0.6902	-0.9582
ATTED:At1g02460.html	HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GATATTT	ATATAAA \| TATATAA \| ATATATA \| TATATAT \| AAGCCCA \| GATATTT	47 \| 48 \| 49 \| 50 \| 68 \| 126	0.08 \| 0.10 \| 0.09 \| 0.10 \| 0.09 \| 0.09	TAIR9	0.0700	-0.2008	-0.4673	0.0255	-0.0191	0.2290	0.4442	0.3877
ATTED:At1g02470.html	HeptamerElement:AAAGTCA	AAAGTCA	164	0.07	TAIR9	0.0795	-1.1266	-0.9605	-0.4800	-0.3145	0.0367	0.4185	0.1446
ATTED:At1g02475.html	-	-	-	-	PPDB	0.4844	0.2154	-0.0361	-1.0246	-1.0793	-1.2064	-1.3572	-1.1832

* Row count is limited to 100.

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Linkdata Work Information

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median