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Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_ATTED_Flowering_median
This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median
This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.
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28

value

useful
0
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.ja
#file_name AtGenExpress_ATTED_Root_median
#download_from http://linkdata.org/work/rdf1s584i
#namespace ATTED http://atted.jp/data/locus/
#namespace HeptamerElement http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif sequence motif position CEG Origin of baseline sequence label:Col-0_root17 label:Col-0_root_MS1 label:Col-0_root_GM-8 label:Col-0_root_GM5-8 label:Col-0_root_GM-21 label:Col-0_root_GM5-21
#object_type_xsd string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html - - - - TAIR9 -0.3725 -0.6564 -0.5125 -0.5392 -0.4342 -0.4254
ATTED:At1g01050.html HeptamerElement:ATATAAA ATATAAA 65 0.08 PPDB 0.6377 0.2900 0.0340 0.0983 -0.0899 0.0277
ATTED:At1g01060.html HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 168 | 169 | 170 0.09 | 0.10 | 0.07 PPDB -1.2963 -0.8396 -0.8650 -0.8484 -0.7601 -0.7594
ATTED:At1g01070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT | AAAATAT 113 | 114 | 183 | 524 0.08 | 0.10 | 0.07 | 0.07 PPDB 1.9279 1.8378 1.1564 1.2574 1.3170 1.8703
ATTED:At1g01080.html HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 287 | 288 0.08 | 0.09 PPDB -2.2340 -1.8811 -2.1578 -2.0869 -2.1124 -2.1529
ATTED:At1g01090.html HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 43 | 44 | 45 | 46 0.11 | 0.10 | 0.10 | 0.10 PPDB 0.0642 0.2136 0.0474 0.1699 -0.4599 -0.6327
ATTED:At1g01100.html HeptamerElement:TATAAAC | HeptamerElement:GGCCCAT | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC | HeptamerElement:AGGCCCA | HeptamerElement:AAGTCAA | HeptamerElement:AAAGTCA TATAAAC | GGCCCAT | GGGCCTA | TGGGCCT | ATGGGCC | AATGGGC | AGGCCCA | AAGTCAA | AAAGTCA 33 | 61 | 82 | 83 | 84 | 85 | 123 | 182 | 183 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.09 | 0.08 | 0.07 | 0.07 PPDB 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
ATTED:At1g01110.html - - - - PPDB 0.1377 -0.2369 -0.1382 -0.2493 -0.5613 -0.5869
ATTED:At1g01130.html HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCAAT AAGCCCA | AAAGCCC | GCCCAAT 36 | 37 | 86 0.07 | 0.06 | 0.07 PPDB -0.7068 -0.7988 -0.8156 -0.7073 -1.0113 -1.0405
ATTED:At1g01140.html HeptamerElement:ACGTGGC | HeptamerElement:ACGCGGA ACGTGGC | ACGCGGA 78 | 113 0.07 | 0.07 PPDB -3.6456 -3.1622 -4.1944 -3.8233 -4.3919 -4.1161
ATTED:At1g01150.html HeptamerElement:AAACCCT | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC AAACCCT | AAACCCT | TAAACCC 382 | 407 | 408 0.14 | 0.14 | 0.10 TAIR9 -0.1298 -0.0074 -0.0267 0.0400 -0.0645 -0.0493
ATTED:At1g01160.html HeptamerElement:GGCCCAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:GGGCCTT GGCCCAA | GGCCCAA | AGGCCCA | GGGCCTT 166 | 193 | 194 | 212 0.07 | 0.07 | 0.07 | 0.06 PPDB -0.1811 -0.0923 -0.1464 -0.4510 -0.1319 -0.1614
ATTED:At1g01170.html HeptamerElement:GATAAGA | HeptamerElement:AGATAAG | HeptamerElement:TTATCCA | HeptamerElement:GCCCATT GATAAGA | AGATAAG | TTATCCA | GCCCATT 18 | 19 | 38 | 64 0.06 | 0.06 | 0.09 | 0.10 PPDB -2.4412 -2.3034 -1.6806 -1.9616 -0.8082 -1.5404
ATTED:At1g01200.html HeptamerElement:ATATAAA | HeptamerElement:ATATAAA | HeptamerElement:ATATAAA ATATAAA | ATATAAA | ATATAAA 38 | 298 | 322 0.08 | 0.08 | 0.08 TAIR9 0.7878 1.2088 0.5453 0.9422 0.6498 0.4172
ATTED:At1g01220.html HeptamerElement:CTCCAGA | HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT CTCCAGA | TGACTTT | TTGACTT | TTTGACT 43 | 108 | 109 | 110 0.06 | 0.06 | 0.07 | 0.07 TAIR9 -0.0937 -0.2262 0.0457 0.2966 -0.1999 -0.1796
ATTED:At1g01225.html HeptamerElement:TCTCTAG TCTCTAG 95 0.06 TAIR9 0.3241 0.4864 -0.0463 0.0726 -0.0750 -0.0483
ATTED:At1g01230.html HeptamerElement:AAATATC AAATATC 43 0.13 PPDB 0.4673 0.7241 0.3993 0.5529 0.2552 0.2904
ATTED:At1g01240.html HeptamerElement:CAGCTGT | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:ACACGTG CAGCTGT | CACGTGT | ACACGTG | CACGTGT | ACACGTG | ACACGTG 117 | 132 | 133 | 477 | 478 | 518 0.07 | 0.11 | 0.10 | 0.11 | 0.10 | 0.10 PPDB -0.0747 -0.3533 -0.1787 -0.2360 0.0874 0.0131
ATTED:At1g01280.html HeptamerElement:TATATAT TATATAT 39 0.10 TAIR9 -0.4389 -0.4135 -0.4920 -0.5517 -0.5255 -0.4563
ATTED:At1g01290.html HeptamerElement:AACCCTA AACCCTA 32 0.13 TAIR9 0.1117 -0.1952 -0.2094 -0.2152 -0.2954 -0.2787
ATTED:At1g01300.html HeptamerElement:GATATTT | HeptamerElement:AGATATT | HeptamerElement:TTATCCA GATATTT | AGATATT | TTATCCA 128 | 129 | 177 0.10 | 0.10 | 0.06 PPDB -0.3591 -0.3694 -0.8203 -0.5545 -1.2031 -1.2836
ATTED:At1g01310.html HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:CATGCAT | HeptamerElement:CCATGCA TGACTTT | TTGACTT | TTTGACT | CATGCAT | CCATGCA 52 | 53 | 54 | 60 | 61 0.06 | 0.07 | 0.06 | 0.06 | 0.07 TAIR9 -0.5494 -0.5948 -0.5949 -0.5438 -0.4946 -0.6724
ATTED:At1g01320.html - - - - PPDB -3.8910 -4.0941 -2.7029 -3.4020 -3.0569 -3.6264
ATTED:At1g01430.html HeptamerElement:CATGCAA | HeptamerElement:CCGACAT | HeptamerElement:AATATCT CATGCAA | CCGACAT | AATATCT 150 | 191 | 223 0.08 | 0.06 | 0.07 PPDB -0.1292 -0.1514 -0.0090 0.0199 -0.5436 -0.7643
ATTED:At1g01440.html - - - - PPDB 0.0507 -0.1509 0.4553 0.1293 0.5075 0.1557
ATTED:At1g01470.html HeptamerElement:AAACCCT | HeptamerElement:AAAACCC | HeptamerElement:GACACGT | HeptamerElement:AGACACG | HeptamerElement:AAATATC AAACCCT | AAAACCC | GACACGT | AGACACG | AAATATC 115 | 116 | 152 | 153 | 233 0.08 | 0.07 | 0.08 | 0.07 | 0.07 PPDB 1.6597 1.3095 1.1800 1.5135 1.0668 1.0583
ATTED:At1g01480.html HeptamerElement:TATATAA | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:CTATATA TATATAA | ATATAAA | TATATAA | CTATATA 27 | 331 | 332 | 333 0.10 | 0.08 | 0.10 | 0.13 PPDB 0.3151 0.3352 0.0637 0.1273 -0.4528 -0.1368
ATTED:At1g01490.html HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT 7 | 8 | 75 | 93 | 95 | 97 | 99 | 152 | 153 | 155 | 157 | 159 | 161 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB -0.8795 0.2064 0.2764 0.5532 0.4502 0.3622
ATTED:At1g01500.html HeptamerElement:AAACCCT | HeptamerElement:AATATCT | HeptamerElement:AAATATC | HeptamerElement:ACACGTG AAACCCT | AATATCT | AAATATC | ACACGTG 5 | 13 | 14 | 136 0.14 | 0.11 | 0.11 | 0.08 PPDB -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
ATTED:At1g01510.html HeptamerElement:TCACTCC | HeptamerElement:CCCTAAA | HeptamerElement:ACCCTAA | HeptamerElement:AACCCTA | HeptamerElement:TTGGGCC TCACTCC | CCCTAAA | ACCCTAA | AACCCTA | TTGGGCC 12 | 44 | 45 | 46 | 111 0.07 | 0.08 | 0.10 | 0.13 | 0.09 PPDB 0.5324 0.0643 0.3192 0.1264 0.1564 0.0298
ATTED:At1g01520.html HeptamerElement:CACGTGT | HeptamerElement:ACACGTG CACGTGT | ACACGTG 64 | 65 0.08 | 0.08 TAIR9 -0.2826 -0.3079 -0.3532 -0.3822 -0.1960 -0.3157
ATTED:At1g01540.html HeptamerElement:CATGCAA | HeptamerElement:CCACACA CATGCAA | CCACACA 38 | 43 0.08 | 0.07 PPDB -0.4733 -0.7322 -0.6992 -0.6696 -0.7048 -0.7544
ATTED:At1g01550.html HeptamerElement:CGTCACA CGTCACA 107 0.06 PPDB 0.5447 0.2707 0.3944 0.0581 0.9004 0.7987
ATTED:At1g01560.html - - - - PPDB -0.8203 -0.4136 -1.6239 -1.2193 -0.9728 -1.0063
ATTED:At1g01600.html HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA TATAAAT | CTATAAA | CCTATAA | TATAAAT | CTATAAA | CCTATAA 27 | 28 | 29 | 524 | 525 | 526 0.10 | 0.09 | 0.07 | 0.10 | 0.09 | 0.07 PPDB -1.1244 -0.0518 -1.0283 -0.9196 -1.1614 -1.0614
ATTED:At1g01610.html HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:AAAACCC | HeptamerElement:TAAAACC CTCTCTT | CTCTCTT | CTCTCTT | AAAACCC | TAAAACC 24 | 34 | 52 | 71 | 72 0.06 | 0.06 | 0.06 | 0.09 | 0.06 PPDB -1.0491 0.7285 0.7593 0.9427 -0.0551 -0.0394
ATTED:At1g01620.html HeptamerElement:TTATCCA TTATCCA 135 0.09 PPDB 1.4047 0.7413 1.1772 0.7771 1.0206 0.5285
ATTED:At1g01630.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT 83 | 84 | 85 | 86 | 103 0.07 | 0.07 | 0.10 | 0.08 | 0.07 PPDB 0.0471 0.5733 0.3462 0.5235 0.1147 0.1869
ATTED:At1g01650.html - - - - PPDB 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
ATTED:At1g01670.html HeptamerElement:ACGTGTC ACGTGTC 64 0.10 PPDB 0.1749 0.0125 -0.1300 -0.0871 0.2095 0.2219
ATTED:At1g01710.html HeptamerElement:ACACGTG ACACGTG 93 0.09 PPDB -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
ATTED:At1g01720.html HeptamerElement:TATATAA | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:GACACGT | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC TATATAA | CGTGTCC | ACGTGTC | CACGTGT | ACACGTG | GACACGT | TCTAGAA | TTCTAGA | CACGTGT | CCACGTG | CGTGTCC | ACGTGTC 27 | 46 | 47 | 48 | 49 | 50 | 80 | 81 | 89 | 90 | 113 | 114 0.11 | 0.06 | 0.09 | 0.11 | 0.09 | 0.08 | 0.14 | 0.10 | 0.11 | 0.07 | 0.06 | 0.09 PPDB 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
ATTED:At1g01730.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:ATGGGCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | ATGGGCC 96 | 97 | 98 | 99 | 110 0.07 | 0.08 | 0.11 | 0.08 | 0.08 PPDB 0.2002 0.0676 0.1307 -0.0419 0.4807 0.3894
ATTED:At1g01740.html - - - - TAIR9 0.0635 -0.3609 -0.2239 -0.0924 0.0955 -0.0797
ATTED:At1g01770.html HeptamerElement:ATATATA | HeptamerElement:TATATAT ATATATA | TATATAT 57 | 58 0.09 | 0.09 PPDB -0.2592 -1.5104 0.1847 -0.6707 0.2722 0.1341
ATTED:At1g01790.html - - - - PPDB -1.2331 -1.5647 -1.2533 -1.3756 -1.4355 -1.5398
ATTED:At1g01820.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 33 | 34 0.09 | 0.09 PPDB 0.1669 0.3312 0.4389 0.1123 0.9988 0.6652
ATTED:At1g01840.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC 51 | 52 | 53 | 54 | 71 | 72 | 73 | 74 0.06 | 0.08 | 0.10 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB -0.6985 -0.3442 -0.3360 -0.2124 -0.5014 -0.5695
ATTED:At1g01860.html - - - - PPDB -0.6336 -0.5593 -0.6008 -0.9336 -0.5312 -0.5592
ATTED:At1g01900.html HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAT | ATATATA | TATATAT | ATATATA | TATATAT | ATATATA 46 | 47 | 48 | 49 | 113 | 236 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 PPDB -0.5438 -0.7903 -1.2826 -0.8430 -1.4556 -1.4544
ATTED:At1g01920.html HeptamerElement:TTAAACC | HeptamerElement:AAAACCC | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCATA | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:AAAACCC TTAAACC | AAAACCC | AAGCCCA | AAAGCCC | GCCCATA | AGCCCAT | AAGCCCA | AAAACCC 4 | 23 | 73 | 74 | 83 | 84 | 85 | 405 0.07 | 0.09 | 0.09 | 0.06 | 0.07 | 0.08 | 0.09 | 0.09 PPDB 0.3434 -0.0907 0.0954 -0.0826 0.2169 -0.1404
ATTED:At1g01930.html HeptamerElement:ATGGGCC | HeptamerElement:TATGGGC | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:GCCGCCT ATGGGCC | TATGGGC | GGGCCTT | TGGGCCT | TTGGGCC | ATTGGGC | TATTGGG | GCCGCCT 84 | 85 | 93 | 94 | 95 | 96 | 97 | 109 0.08 | 0.06 | 0.06 | 0.10 | 0.09 | 0.09 | 0.06 | 0.07 PPDB -0.2469 -0.2854 -0.0877 -0.1567 -0.1636 -0.2410
ATTED:At1g01940.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCATA | GGCCCAT 111 | 112 | 113 | 114 | 122 | 123 0.07 | 0.08 | 0.11 | 0.08 | 0.07 | 0.10 PPDB 0.8357 0.3485 0.1033 0.2582 0.1614 0.0387
ATTED:At1g01950.html HeptamerElement:AAAATAT | HeptamerElement:CTCTCTT AAAATAT | CTCTCTT 20 | 169 0.07 | 0.06 PPDB 0.0749 -0.2731 -0.2179 -0.1794 -0.2922 -0.3798
ATTED:At1g01970.html HeptamerElement:TCTCTAG | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC TCTCTAG | GCCCATA | GGCCCAT | AGGCCCA | AAGGCCC | GCCCAAT | GGCCCAA | AGGCCCA | ATGGGCC | AATGGGC 104 | 120 | 121 | 122 | 123 | 138 | 139 | 140 | 160 | 161 0.06 | 0.07 | 0.10 | 0.10 | 0.08 | 0.07 | 0.07 | 0.10 | 0.07 | 0.07 PPDB -1.7061 -1.4726 -1.3674 -1.7131 -1.6648 -1.7574
ATTED:At1g01990.html HeptamerElement:CTCTCTT | HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT CTCTCTT | CCCATTA | GCCCATT | AGCCCAT | TGGGCTT | TGGGCTT | ATGGGCT 37 | 61 | 62 | 63 | 74 | 123 | 124 0.06 | 0.07 | 0.10 | 0.09 | 0.06 | 0.06 | 0.06 PPDB -0.4800 -0.4949 -0.4639 -0.5958 -0.3293 -0.3832
ATTED:At1g02020.html HeptamerElement:TGCCGAC TGCCGAC 118 0.08 PPDB -1.0213 -0.8864 -0.3477 -0.5509 -0.1683 -0.5037
ATTED:At1g02050.html - - - - TAIR9 -0.1858 -0.7755 0.0006 -0.4812 0.1818 -0.3104
ATTED:At1g02060.html HeptamerElement:AGGGTTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TCTAGAA | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:AGGGTTT AGGGTTT | TGGGCCT | TTGGGCC | ATTGGGC | GCCCATT | AGCCCAT | TCTAGAA | GGGCCTA | TGGGCCT | TTGGGCC | ATTGGGC | AGGGTTT 12 | 44 | 45 | 46 | 56 | 57 | 72 | 90 | 91 | 92 | 93 | 269 0.10 | 0.09 | 0.08 | 0.08 | 0.10 | 0.08 | 0.11 | 0.06 | 0.09 | 0.08 | 0.08 | 0.10 PPDB 0.3317 -0.2293 0.2880 -0.2552 0.1137 -0.1060
ATTED:At1g02070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA ATAAATA | TATAAAT | ATATAAA | TATATAA | ATATATA | TATATAT | ATATATA | ATATATA | TATATAT | ATATATA 6 | 7 | 8 | 9 | 10 | 11 | 12 | 28 | 29 | 30 0.09 | 0.10 | 0.09 | 0.11 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 TAIR9 -0.7059 -1.1132 -1.0410 -0.9082 -0.9781 -1.0053
ATTED:At1g02080.html HeptamerElement:AACCCTA AACCCTA 436 0.10 PPDB 0.3044 -0.7526 -0.0364 -0.1413 0.1528 0.1149
ATTED:At1g02090.html HeptamerElement:ATATAAA | HeptamerElement:GTCGGTC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:CGCGGTT | HeptamerElement:ACGCGGT | HeptamerElement:AGCCCAA ATATAAA | GTCGGTC | TCTAGAA | TTCTAGA | GCCCAAT | AGCCCAA | CGCGGTT | ACGCGGT | AGCCCAA 26 | 50 | 64 | 65 | 84 | 85 | 139 | 140 | 492 0.09 | 0.06 | 0.12 | 0.09 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB 0.3642 0.5068 0.2695 0.2681 -0.0693 0.0970
ATTED:At1g02100.html HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CTTCTAG TTGGGCT | ATTGGGC | TCTAGAA | TTCTAGA | CTTCTAG 138 | 139 | 158 | 159 | 160 0.07 | 0.08 | 0.10 | 0.10 | 0.08 PPDB 0.5821 0.3504 0.7964 0.2388 0.8802 0.5336
ATTED:At1g02120.html HeptamerElement:GGCCCAA GGCCCAA 176 0.07 TAIR9 0.1951 -0.1159 0.3461 0.0252 0.4240 0.2234
ATTED:At1g02130.html HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC GGCCCAA | AGGCCCA | AAGGCCC | TGGGCCT | TTGGGCC | ATTGGGC | TGGGCCT | TTGGGCC | ATTGGGC 52 | 53 | 54 | 79 | 80 | 81 | 190 | 191 | 192 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.08 | 0.09 | 0.08 | 0.08 PPDB 0.3972 0.3759 0.3559 0.1926 0.3253 0.2778
ATTED:At1g02140.html HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:GTCGGCA CCCATTA | GCCCATT | AGCCCAT | AAGCCCA | GCCCAAT | GGCCCAA | GGGCCTT | TGGGCCT | GTCGGCA 64 | 65 | 66 | 67 | 78 | 79 | 112 | 113 | 198 0.06 | 0.09 | 0.07 | 0.08 | 0.07 | 0.08 | 0.07 | 0.10 | 0.06 PPDB 0.1981 0.2581 0.2064 0.1444 0.2483 0.0931
ATTED:At1g02160.html HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:AAGGCCC | HeptamerElement:TTGGGCC | HeptamerElement:AGGCCCA GGCCCAT | AGGCCCA | AAGGCCC | TATATAA | ATATATA | AAGGCCC | TTGGGCC | AGGCCCA 8 | 9 | 10 | 31 | 32 | 47 | 64 | 538 0.09 | 0.10 | 0.08 | 0.10 | 0.08 | 0.08 | 0.09 | 0.10 PPDB 0.1132 -0.2290 -0.3236 -0.3316 0.0432 -0.2500
ATTED:At1g02180.html HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:AGCCCAA GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC | AGCCCAA 69 | 70 | 71 | 72 | 88 0.07 | 0.07 | 0.09 | 0.06 | 0.07 PPDB -0.8414 -0.6278 -1.0141 -0.4999 -0.8151 -0.8747
ATTED:At1g02190.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:CTCTATA TATATAA | CTATATA | TCTATAT | CTCTATA 28 | 29 | 30 | 31 0.11 | 0.13 | 0.10 | 0.10 PPDB -1.7437 -1.9870 -1.9341 -1.9118 -1.9590 -1.9710
ATTED:At1g02205.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TATAAAC | HeptamerElement:ATATAAA | HeptamerElement:ATATCTA TATATAA | CTATATA | TATAAAC | ATATAAA | ATATCTA 34 | 35 | 46 | 47 | 70 0.11 | 0.13 | 0.07 | 0.08 | 0.06 PPDB -4.5255 -3.8109 -4.2419 -3.5550 -4.2014 -3.6926
ATTED:At1g02260.html HeptamerElement:CGTGGCA | HeptamerElement:ACGTGGC CGTGGCA | ACGTGGC 46 | 47 0.08 | 0.09 PPDB 0.1833 0.2295 0.2311 0.1444 0.1016 0.3459
ATTED:At1g02270.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 126 | 127 0.09 | 0.09 PPDB 0.0241 -0.1516 -0.2698 -0.1902 -0.2735 -0.1666
ATTED:At1g02280.html HeptamerElement:GATAAGG GATAAGG 15 0.07 PPDB -0.9763 -1.4645 -0.8910 -1.5044 -1.0048 -1.5616
ATTED:At1g02310.html HeptamerElement:CCACACA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ACGCGTT | HeptamerElement:TATATAA | HeptamerElement:ATATATA CCACACA | TATATAA | ATATATA | TATATAT | ACGCGTT | TATATAA | ATATATA 25 | 34 | 35 | 36 | 131 | 541 | 542 0.06 | 0.11 | 0.10 | 0.10 | 0.10 | 0.11 | 0.10 PPDB 0.7342 0.9435 0.0828 0.7498 1.6038 2.1491
ATTED:At1g02330.html HeptamerElement:GGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:TGGGCCT GGCCCAT | TGGGCTT | ATGGGCT | AATGGGC | ATGGGCT | AATGGGC | TGGGCCT 90 | 105 | 106 | 107 | 179 | 180 | 199 0.08 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB 0.4257 0.0835 0.1077 0.1611 0.1478 0.0238
ATTED:At1g02340.html HeptamerElement:CCACACA CCACACA 114 0.06 PPDB -1.2795 0.2895 1.1734 0.4451 2.2510 1.4022
ATTED:At1g02360.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:ACGCGTT | HeptamerElement:AACGCGT | HeptamerElement:TCTATAT TATATAA | CTATATA | TCTATAT | ACGCGTT | AACGCGT | TCTATAT 30 | 31 | 32 | 52 | 53 | 416 0.11 | 0.13 | 0.10 | 0.10 | 0.07 | 0.10 PPDB 2.1875 4.9171 4.7122 4.9009 4.3858 4.1707
ATTED:At1g02370.html HeptamerElement:AACCCTA | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC | HeptamerElement:TTAAACC AACCCTA | AAACCCT | TAAACCC | TTAAACC 31 | 32 | 33 | 34 0.11 | 0.12 | 0.08 | 0.06 PPDB 0.2011 -0.1441 -0.0603 -0.2841 0.0431 -0.3271
ATTED:At1g02390.html HeptamerElement:TATATAA | HeptamerElement:AAATATC | HeptamerElement:CATGCAA | HeptamerElement:ACGCGTA | HeptamerElement:GACGCGT | HeptamerElement:AAATATC TATATAA | AAATATC | CATGCAA | ACGCGTA | GACGCGT | AAATATC 28 | 71 | 122 | 172 | 173 | 180 0.11 | 0.07 | 0.07 | 0.10 | 0.06 | 0.07 PPDB 0.3364 -0.3157 -0.9200 -0.6872 -0.6297 -0.2602
ATTED:At1g02400.html HeptamerElement:AATAATT | HeptamerElement:AATAATT AATAATT | AATAATT 236 | 332 0.06 | 0.06 PPDB 1.8780 2.2087 1.2073 1.8107 1.8604 2.0779
ATTED:At1g02410.html HeptamerElement:TTGACTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT TTGACTT | TTGACTT | TTTGACT | AATAATT | TGGGCTT | TGGGCTT | AATAATT | TGGGCTT 40 | 48 | 49 | 113 | 149 | 173 | 307 | 412 0.08 | 0.08 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 PPDB -0.4517 0.0620 -0.2711 -0.3865 -0.2842 -0.2530
ATTED:At1g02450.html HeptamerElement:AAATATC | HeptamerElement:AAATATC AAATATC | AAATATC 165 | 187 0.07 | 0.07 PPDB -0.1127 -1.3968 -1.5445 -1.5646 -1.2067 -1.4716
ATTED:At1g02460.html HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:AAGCCCA | HeptamerElement:GATATTT ATATAAA | TATATAA | ATATATA | TATATAT | AAGCCCA | GATATTT 47 | 48 | 49 | 50 | 68 | 126 0.08 | 0.10 | 0.09 | 0.10 | 0.09 | 0.09 TAIR9 0.0943 0.3185 0.2283 0.3326 0.0370 -0.0134
ATTED:At1g02470.html HeptamerElement:AAAGTCA AAAGTCA 164 0.07 TAIR9 -1.1390 -0.6825 -1.3915 -1.2012 -1.0002 -1.0775
ATTED:At1g02475.html - - - - PPDB -2.5591 -1.8571 -1.7111 -1.9120 -1.6095 -1.6784
* Row count is limited to 100.