Contact

Link and Publish your data

to the Linked Open Data Community

Linkdata Work Information

Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) normalized

Normalized Expression Data of AtGenExpress plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_ATTED_Flowering_normalize
This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_normalize
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_normalize
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_normalize
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_normalize
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_normalize
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_normalize
This collection of Gene Expression Properties are associated with whole plant body parts.
22

value

useful
0
Loading...



Select a file name to see the detais.
   
#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.ja
#file_name AtGenExpress_ATTED_Root_normalize
#download_from http://linkdata.org/work/rdf1s585i
#namespace ATTED http://atted.jp/data/locus/
#namespace HeptamerElement http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif sequence motif position CEG Origin of baseline sequence label:Col-0_root17 label:Col-0_root_MS1 label:Col-0_root_GM-8 label:Col-0_root_GM5-8 label:Col-0_root_GM-21 label:Col-0_root_GM5-21
#object_type_xsd string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html - - - - TAIR9 -0.7585 -1.0424 -0.8985 -0.9252 -0.8202 -0.8114
ATTED:At1g01050.html HeptamerElement:ATATAAA ATATAAA 65 0.08 PPDB 0.4845 0.1368 -0.1192 -0.0549 -0.2431 -0.1255
ATTED:At1g01060.html HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 168 | 169 | 170 0.09 | 0.10 | 0.07 PPDB -1.9673 -1.5106 -1.5360 -1.5194 -1.4311 -1.4304
ATTED:At1g01070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT | AAAATAT 113 | 114 | 183 | 524 0.08 | 0.10 | 0.07 | 0.07 PPDB 0.0892 -0.0009 -0.6823 -0.5813 -0.5217 0.0316
ATTED:At1g01080.html HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 287 | 288 0.08 | 0.09 PPDB -3.1683 -2.8154 -3.0921 -3.0212 -3.0467 -3.0872
ATTED:At1g01090.html HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 43 | 44 | 45 | 46 0.11 | 0.10 | 0.10 | 0.10 PPDB -0.4280 -0.2786 -0.4448 -0.3223 -0.9521 -1.1249
ATTED:At1g01100.html HeptamerElement:TATAAAC | HeptamerElement:GGCCCAT | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC | HeptamerElement:AGGCCCA | HeptamerElement:AAGTCAA | HeptamerElement:AAAGTCA TATAAAC | GGCCCAT | GGGCCTA | TGGGCCT | ATGGGCC | AATGGGC | AGGCCCA | AAGTCAA | AAAGTCA 33 | 61 | 82 | 83 | 84 | 85 | 123 | 182 | 183 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.09 | 0.08 | 0.07 | 0.07 PPDB 0.2992 0.0204 -0.2718 -0.3565 -0.2231 -0.2893
ATTED:At1g01110.html - - - - PPDB -0.6224 -0.9970 -0.8983 -1.0094 -1.3214 -1.3470
ATTED:At1g01130.html HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCAAT AAGCCCA | AAAGCCC | GCCCAAT 36 | 37 | 86 0.07 | 0.06 | 0.07 PPDB -1.3233 -1.4153 -1.4321 -1.3238 -1.6278 -1.6570
ATTED:At1g01140.html HeptamerElement:ACGTGGC | HeptamerElement:ACGCGGA ACGTGGC | ACGCGGA 78 | 113 0.07 | 0.07 PPDB -4.7744 -4.2910 -5.3232 -4.9521 -5.5207 -5.2449
ATTED:At1g01150.html HeptamerElement:AAACCCT | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC AAACCCT | AAACCCT | TAAACCC 382 | 407 | 408 0.14 | 0.14 | 0.10 TAIR9 -0.1423 -0.0199 -0.0392 0.0275 -0.0770 -0.0618
ATTED:At1g01160.html HeptamerElement:GGCCCAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:GGGCCTT GGCCCAA | GGCCCAA | AGGCCCA | GGGCCTT 166 | 193 | 194 | 212 0.07 | 0.07 | 0.07 | 0.06 PPDB -0.5693 -0.4805 -0.5346 -0.8392 -0.5201 -0.5496
ATTED:At1g01170.html HeptamerElement:GATAAGA | HeptamerElement:AGATAAG | HeptamerElement:TTATCCA | HeptamerElement:GCCCATT GATAAGA | AGATAAG | TTATCCA | GCCCATT 18 | 19 | 38 | 64 0.06 | 0.06 | 0.09 | 0.10 PPDB -3.3330 -3.1952 -2.5724 -2.8534 -1.7000 -2.4322
ATTED:At1g01200.html HeptamerElement:ATATAAA | HeptamerElement:ATATAAA | HeptamerElement:ATATAAA ATATAAA | ATATAAA | ATATAAA 38 | 298 | 322 0.08 | 0.08 | 0.08 TAIR9 0.4671 0.8881 0.2246 0.6215 0.3291 0.0965
ATTED:At1g01220.html HeptamerElement:CTCCAGA | HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT CTCCAGA | TGACTTT | TTGACTT | TTTGACT 43 | 108 | 109 | 110 0.06 | 0.06 | 0.07 | 0.07 TAIR9 -0.3544 -0.4869 -0.2150 0.0359 -0.4606 -0.4403
ATTED:At1g01225.html HeptamerElement:TCTCTAG TCTCTAG 95 0.06 TAIR9 -0.9740 -0.8117 -1.3444 -1.2255 -1.3731 -1.3464
ATTED:At1g01230.html HeptamerElement:AAATATC AAATATC 43 0.13 PPDB 0.0431 0.2999 -0.0249 0.1287 -0.1690 -0.1338
ATTED:At1g01240.html HeptamerElement:CAGCTGT | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:ACACGTG CAGCTGT | CACGTGT | ACACGTG | CACGTGT | ACACGTG | ACACGTG 117 | 132 | 133 | 477 | 478 | 518 0.07 | 0.11 | 0.10 | 0.11 | 0.10 | 0.10 PPDB -1.3528 -1.6314 -1.4568 -1.5141 -1.1907 -1.2650
ATTED:At1g01280.html HeptamerElement:TATATAT TATATAT 39 0.10 TAIR9 -4.9361 -4.9107 -4.9892 -5.0489 -5.0227 -4.9535
ATTED:At1g01290.html HeptamerElement:AACCCTA AACCCTA 32 0.13 TAIR9 -0.0238 -0.3307 -0.3449 -0.3507 -0.4309 -0.4142
ATTED:At1g01300.html HeptamerElement:GATATTT | HeptamerElement:AGATATT | HeptamerElement:TTATCCA GATATTT | AGATATT | TTATCCA 128 | 129 | 177 0.10 | 0.10 | 0.06 PPDB -1.2327 -1.2430 -1.6939 -1.4281 -2.0767 -2.1572
ATTED:At1g01310.html HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:CATGCAT | HeptamerElement:CCATGCA TGACTTT | TTGACTT | TTTGACT | CATGCAT | CCATGCA 52 | 53 | 54 | 60 | 61 0.06 | 0.07 | 0.06 | 0.06 | 0.07 TAIR9 -6.2805 -6.3259 -6.3260 -6.2749 -6.2257 -6.4035
ATTED:At1g01320.html - - - - PPDB -4.7895 -4.9926 -3.6014 -4.3005 -3.9554 -4.5249
ATTED:At1g01430.html HeptamerElement:CATGCAA | HeptamerElement:CCGACAT | HeptamerElement:AATATCT CATGCAA | CCGACAT | AATATCT 150 | 191 | 223 0.08 | 0.06 | 0.07 PPDB -0.7070 -0.7292 -0.5868 -0.5579 -1.1214 -1.3421
ATTED:At1g01440.html - - - - PPDB -0.1391 -0.3407 0.2655 -0.0605 0.3177 -0.0341
ATTED:At1g01470.html HeptamerElement:AAACCCT | HeptamerElement:AAAACCC | HeptamerElement:GACACGT | HeptamerElement:AGACACG | HeptamerElement:AAATATC AAACCCT | AAAACCC | GACACGT | AGACACG | AAATATC 115 | 116 | 152 | 153 | 233 0.08 | 0.07 | 0.08 | 0.07 | 0.07 PPDB -0.2239 -0.5741 -0.7036 -0.3701 -0.8168 -0.8253
ATTED:At1g01480.html HeptamerElement:TATATAA | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:CTATATA TATATAA | ATATAAA | TATATAA | CTATATA 27 | 331 | 332 | 333 0.10 | 0.08 | 0.10 | 0.13 PPDB -2.2337 -2.2136 -2.4851 -2.4215 -3.0016 -2.6856
ATTED:At1g01490.html HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT 7 | 8 | 75 | 93 | 95 | 97 | 99 | 152 | 153 | 155 | 157 | 159 | 161 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB -1.2893 -0.2034 -0.1334 0.1434 0.0404 -0.0476
ATTED:At1g01500.html HeptamerElement:AAACCCT | HeptamerElement:AATATCT | HeptamerElement:AAATATC | HeptamerElement:ACACGTG AAACCCT | AATATCT | AAATATC | ACACGTG 5 | 13 | 14 | 136 0.14 | 0.11 | 0.11 | 0.08 PPDB -2.2413 -1.7036 -1.7406 -1.8942 -1.6738 -1.8274
ATTED:At1g01510.html HeptamerElement:TCACTCC | HeptamerElement:CCCTAAA | HeptamerElement:ACCCTAA | HeptamerElement:AACCCTA | HeptamerElement:TTGGGCC TCACTCC | CCCTAAA | ACCCTAA | AACCCTA | TTGGGCC 12 | 44 | 45 | 46 | 111 0.07 | 0.08 | 0.10 | 0.13 | 0.09 PPDB 0.2121 -0.2560 -0.0011 -0.1939 -0.1639 -0.2905
ATTED:At1g01520.html HeptamerElement:CACGTGT | HeptamerElement:ACACGTG CACGTGT | ACACGTG 64 | 65 0.08 | 0.08 TAIR9 -0.8822 -0.9075 -0.9528 -0.9818 -0.7956 -0.9153
ATTED:At1g01540.html HeptamerElement:CATGCAA | HeptamerElement:CCACACA CATGCAA | CCACACA 38 | 43 0.08 | 0.07 PPDB -0.7856 -1.0445 -1.0115 -0.9819 -1.0171 -1.0667
ATTED:At1g01550.html HeptamerElement:CGTCACA CGTCACA 107 0.06 PPDB 0.2555 -0.0185 0.1052 -0.2311 0.6112 0.5095
ATTED:At1g01560.html - - - - PPDB -2.5861 -2.1794 -3.3897 -2.9851 -2.7386 -2.7721
ATTED:At1g01600.html HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA TATAAAT | CTATAAA | CCTATAA | TATAAAT | CTATAAA | CCTATAA 27 | 28 | 29 | 524 | 525 | 526 0.10 | 0.09 | 0.07 | 0.10 | 0.09 | 0.07 PPDB -4.9674 -3.8948 -4.8713 -4.7626 -5.0044 -4.9044
ATTED:At1g01610.html HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:AAAACCC | HeptamerElement:TAAAACC CTCTCTT | CTCTCTT | CTCTCTT | AAAACCC | TAAAACC 24 | 34 | 52 | 71 | 72 0.06 | 0.06 | 0.06 | 0.09 | 0.06 PPDB -2.0385 -0.2609 -0.2301 -0.0467 -1.0445 -1.0288
ATTED:At1g01620.html HeptamerElement:TTATCCA TTATCCA 135 0.09 PPDB 0.8586 0.1952 0.6311 0.2310 0.4745 -0.0176
ATTED:At1g01630.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT 83 | 84 | 85 | 86 | 103 0.07 | 0.07 | 0.10 | 0.08 | 0.07 PPDB -1.2345 -0.7083 -0.9354 -0.7581 -1.1669 -1.0947
ATTED:At1g01650.html - - - - PPDB -0.2560 -0.8007 -0.6689 -0.7864 -0.5578 -0.7403
ATTED:At1g01670.html HeptamerElement:ACGTGTC ACGTGTC 64 0.10 PPDB 0.1170 -0.0454 -0.1879 -0.1450 0.1516 0.1640
ATTED:At1g01710.html HeptamerElement:ACACGTG ACACGTG 93 0.09 PPDB -0.6879 -0.6964 -0.5749 -0.4090 -0.3264 -0.2969
ATTED:At1g01720.html HeptamerElement:TATATAA | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:GACACGT | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC TATATAA | CGTGTCC | ACGTGTC | CACGTGT | ACACGTG | GACACGT | TCTAGAA | TTCTAGA | CACGTGT | CCACGTG | CGTGTCC | ACGTGTC 27 | 46 | 47 | 48 | 49 | 50 | 80 | 81 | 89 | 90 | 113 | 114 0.11 | 0.06 | 0.09 | 0.11 | 0.09 | 0.08 | 0.14 | 0.10 | 0.11 | 0.07 | 0.06 | 0.09 PPDB -0.7521 -1.6704 -1.3198 -1.7242 -1.2264 -0.7638
ATTED:At1g01730.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:ATGGGCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | ATGGGCC 96 | 97 | 98 | 99 | 110 0.07 | 0.08 | 0.11 | 0.08 | 0.08 PPDB -0.1510 -0.2836 -0.2205 -0.3931 0.1295 0.0382
ATTED:At1g01740.html - - - - TAIR9 -0.0279 -0.4523 -0.3153 -0.1838 0.0041 -0.1711
ATTED:At1g01770.html HeptamerElement:ATATATA | HeptamerElement:TATATAT ATATATA | TATATAT 57 | 58 0.09 | 0.09 PPDB -1.1044 -2.3556 -0.6605 -1.5159 -0.5730 -0.7111
ATTED:At1g01790.html - - - - PPDB -1.8741 -2.2057 -1.8943 -2.0166 -2.0765 -2.1808
ATTED:At1g01820.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 33 | 34 0.09 | 0.09 PPDB -0.0374 0.1269 0.2346 -0.0920 0.7945 0.4609
ATTED:At1g01840.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC 51 | 52 | 53 | 54 | 71 | 72 | 73 | 74 0.06 | 0.08 | 0.10 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB -0.9162 -0.5619 -0.5537 -0.4301 -0.7191 -0.7872
ATTED:At1g01860.html - - - - PPDB -0.8478 -0.7735 -0.8150 -1.1478 -0.7454 -0.7734
ATTED:At1g01900.html HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAT | ATATATA | TATATAT | ATATATA | TATATAT | ATATATA 46 | 47 | 48 | 49 | 113 | 236 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 PPDB -2.9438 -3.1903 -3.6826 -3.2430 -3.8556 -3.8544
ATTED:At1g01920.html HeptamerElement:TTAAACC | HeptamerElement:AAAACCC | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCATA | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:AAAACCC TTAAACC | AAAACCC | AAGCCCA | AAAGCCC | GCCCATA | AGCCCAT | AAGCCCA | AAAACCC 4 | 23 | 73 | 74 | 83 | 84 | 85 | 405 0.07 | 0.09 | 0.09 | 0.06 | 0.07 | 0.08 | 0.09 | 0.09 PPDB 0.0899 -0.3442 -0.1581 -0.3361 -0.0366 -0.3939
ATTED:At1g01930.html HeptamerElement:ATGGGCC | HeptamerElement:TATGGGC | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:GCCGCCT ATGGGCC | TATGGGC | GGGCCTT | TGGGCCT | TTGGGCC | ATTGGGC | TATTGGG | GCCGCCT 84 | 85 | 93 | 94 | 95 | 96 | 97 | 109 0.08 | 0.06 | 0.06 | 0.10 | 0.09 | 0.09 | 0.06 | 0.07 PPDB -0.3584 -0.3969 -0.1992 -0.2682 -0.2751 -0.3525
ATTED:At1g01940.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCATA | GGCCCAT 111 | 112 | 113 | 114 | 122 | 123 0.07 | 0.08 | 0.11 | 0.08 | 0.07 | 0.10 PPDB 0.3803 -0.1069 -0.3521 -0.1972 -0.2940 -0.4167
ATTED:At1g01950.html HeptamerElement:AAAATAT | HeptamerElement:CTCTCTT AAAATAT | CTCTCTT 20 | 169 0.07 | 0.06 PPDB -0.0586 -0.4066 -0.3514 -0.3129 -0.4257 -0.5133
ATTED:At1g01970.html HeptamerElement:TCTCTAG | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC TCTCTAG | GCCCATA | GGCCCAT | AGGCCCA | AAGGCCC | GCCCAAT | GGCCCAA | AGGCCCA | ATGGGCC | AATGGGC 104 | 120 | 121 | 122 | 123 | 138 | 139 | 140 | 160 | 161 0.06 | 0.07 | 0.10 | 0.10 | 0.08 | 0.07 | 0.07 | 0.10 | 0.07 | 0.07 PPDB -2.2281 -1.9946 -1.8894 -2.2351 -2.1868 -2.2794
ATTED:At1g01990.html HeptamerElement:CTCTCTT | HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT CTCTCTT | CCCATTA | GCCCATT | AGCCCAT | TGGGCTT | TGGGCTT | ATGGGCT 37 | 61 | 62 | 63 | 74 | 123 | 124 0.06 | 0.07 | 0.10 | 0.09 | 0.06 | 0.06 | 0.06 PPDB -0.6772 -0.6921 -0.6611 -0.7930 -0.5265 -0.5804
ATTED:At1g02020.html HeptamerElement:TGCCGAC TGCCGAC 118 0.08 PPDB -1.1911 -1.0562 -0.5175 -0.7207 -0.3381 -0.6735
ATTED:At1g02050.html - - - - TAIR9 -3.8038 -4.3935 -3.6174 -4.0992 -3.4362 -3.9284
ATTED:At1g02060.html HeptamerElement:AGGGTTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TCTAGAA | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:AGGGTTT AGGGTTT | TGGGCCT | TTGGGCC | ATTGGGC | GCCCATT | AGCCCAT | TCTAGAA | GGGCCTA | TGGGCCT | TTGGGCC | ATTGGGC | AGGGTTT 12 | 44 | 45 | 46 | 56 | 57 | 72 | 90 | 91 | 92 | 93 | 269 0.10 | 0.09 | 0.08 | 0.08 | 0.10 | 0.08 | 0.11 | 0.06 | 0.09 | 0.08 | 0.08 | 0.10 PPDB 0.2119 -0.3491 0.1682 -0.3750 -0.0061 -0.2258
ATTED:At1g02070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA ATAAATA | TATAAAT | ATATAAA | TATATAA | ATATATA | TATATAT | ATATATA | ATATATA | TATATAT | ATATATA 6 | 7 | 8 | 9 | 10 | 11 | 12 | 28 | 29 | 30 0.09 | 0.10 | 0.09 | 0.11 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 TAIR9 -3.2251 -3.6324 -3.5602 -3.4274 -3.4973 -3.5245
ATTED:At1g02080.html HeptamerElement:AACCCTA AACCCTA 436 0.10 PPDB 0.1687 -0.8883 -0.1721 -0.2770 0.0171 -0.0208
ATTED:At1g02090.html HeptamerElement:ATATAAA | HeptamerElement:GTCGGTC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:CGCGGTT | HeptamerElement:ACGCGGT | HeptamerElement:AGCCCAA ATATAAA | GTCGGTC | TCTAGAA | TTCTAGA | GCCCAAT | AGCCCAA | CGCGGTT | ACGCGGT | AGCCCAA 26 | 50 | 64 | 65 | 84 | 85 | 139 | 140 | 492 0.09 | 0.06 | 0.12 | 0.09 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB 0.1033 0.2459 0.0086 0.0072 -0.3302 -0.1639
ATTED:At1g02100.html HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CTTCTAG TTGGGCT | ATTGGGC | TCTAGAA | TTCTAGA | CTTCTAG 138 | 139 | 158 | 159 | 160 0.07 | 0.08 | 0.10 | 0.10 | 0.08 PPDB 0.3954 0.1637 0.6097 0.0521 0.6935 0.3469
ATTED:At1g02120.html HeptamerElement:GGCCCAA GGCCCAA 176 0.07 TAIR9 -0.0121 -0.3231 0.1389 -0.1820 0.2168 0.0162
ATTED:At1g02130.html HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC GGCCCAA | AGGCCCA | AAGGCCC | TGGGCCT | TTGGGCC | ATTGGGC | TGGGCCT | TTGGGCC | ATTGGGC 52 | 53 | 54 | 79 | 80 | 81 | 190 | 191 | 192 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.08 | 0.09 | 0.08 | 0.08 PPDB 0.3244 0.3031 0.2831 0.1198 0.2525 0.2050
ATTED:At1g02140.html HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:GTCGGCA CCCATTA | GCCCATT | AGCCCAT | AAGCCCA | GCCCAAT | GGCCCAA | GGGCCTT | TGGGCCT | GTCGGCA 64 | 65 | 66 | 67 | 78 | 79 | 112 | 113 | 198 0.06 | 0.09 | 0.07 | 0.08 | 0.07 | 0.08 | 0.07 | 0.10 | 0.06 PPDB 0.0816 0.1416 0.0899 0.0279 0.1318 -0.0234
ATTED:At1g02160.html HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:AAGGCCC | HeptamerElement:TTGGGCC | HeptamerElement:AGGCCCA GGCCCAT | AGGCCCA | AAGGCCC | TATATAA | ATATATA | AAGGCCC | TTGGGCC | AGGCCCA 8 | 9 | 10 | 31 | 32 | 47 | 64 | 538 0.09 | 0.10 | 0.08 | 0.10 | 0.08 | 0.08 | 0.09 | 0.10 PPDB -0.3242 -0.6664 -0.7610 -0.7690 -0.3942 -0.6874
ATTED:At1g02180.html HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:AGCCCAA GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC | AGCCCAA 69 | 70 | 71 | 72 | 88 0.07 | 0.07 | 0.09 | 0.06 | 0.07 PPDB -1.4029 -1.1893 -1.5756 -1.0614 -1.3766 -1.4362
ATTED:At1g02190.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:CTCTATA TATATAA | CTATATA | TCTATAT | CTCTATA 28 | 29 | 30 | 31 0.11 | 0.13 | 0.10 | 0.10 PPDB -4.5789 -4.8222 -4.7693 -4.7470 -4.7942 -4.8062
ATTED:At1g02205.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TATAAAC | HeptamerElement:ATATAAA | HeptamerElement:ATATCTA TATATAA | CTATATA | TATAAAC | ATATAAA | ATATCTA 34 | 35 | 46 | 47 | 70 0.11 | 0.13 | 0.07 | 0.08 | 0.06 PPDB -6.6193 -5.9047 -6.3357 -5.6488 -6.2952 -5.7864
ATTED:At1g02260.html HeptamerElement:CGTGGCA | HeptamerElement:ACGTGGC CGTGGCA | ACGTGGC 46 | 47 0.08 | 0.09 PPDB 0.0636 0.1098 0.1114 0.0247 -0.0181 0.2262
ATTED:At1g02270.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 126 | 127 0.09 | 0.09 PPDB -0.2453 -0.4210 -0.5392 -0.4596 -0.5429 -0.4360
ATTED:At1g02280.html HeptamerElement:GATAAGG GATAAGG 15 0.07 PPDB -1.6069 -2.0951 -1.5216 -2.1350 -1.6354 -2.1922
ATTED:At1g02310.html HeptamerElement:CCACACA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ACGCGTT | HeptamerElement:TATATAA | HeptamerElement:ATATATA CCACACA | TATATAA | ATATATA | TATATAT | ACGCGTT | TATATAA | ATATATA 25 | 34 | 35 | 36 | 131 | 541 | 542 0.06 | 0.11 | 0.10 | 0.10 | 0.10 | 0.11 | 0.10 PPDB -1.8582 -1.6489 -2.5096 -1.8426 -0.9886 -0.4433
ATTED:At1g02330.html HeptamerElement:GGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:TGGGCCT GGCCCAT | TGGGCTT | ATGGGCT | AATGGGC | ATGGGCT | AATGGGC | TGGGCCT 90 | 105 | 106 | 107 | 179 | 180 | 199 0.08 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB 0.1637 -0.1785 -0.1543 -0.1009 -0.1142 -0.2382
ATTED:At1g02340.html HeptamerElement:CCACACA CCACACA 114 0.06 PPDB -3.2520 -1.6830 -0.7991 -1.5274 0.2785 -0.5703
ATTED:At1g02360.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:ACGCGTT | HeptamerElement:AACGCGT | HeptamerElement:TCTATAT TATATAA | CTATATA | TCTATAT | ACGCGTT | AACGCGT | TCTATAT 30 | 31 | 32 | 52 | 53 | 416 0.11 | 0.13 | 0.10 | 0.10 | 0.07 | 0.10 PPDB -1.3283 1.4013 1.1964 1.3851 0.8700 0.6549
ATTED:At1g02370.html HeptamerElement:AACCCTA | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC | HeptamerElement:TTAAACC AACCCTA | AAACCCT | TAAACCC | TTAAACC 31 | 32 | 33 | 34 0.11 | 0.12 | 0.08 | 0.06 PPDB -0.4588 -0.8040 -0.7202 -0.9440 -0.6168 -0.9870
ATTED:At1g02390.html HeptamerElement:TATATAA | HeptamerElement:AAATATC | HeptamerElement:CATGCAA | HeptamerElement:ACGCGTA | HeptamerElement:GACGCGT | HeptamerElement:AAATATC TATATAA | AAATATC | CATGCAA | ACGCGTA | GACGCGT | AAATATC 28 | 71 | 122 | 172 | 173 | 180 0.11 | 0.07 | 0.07 | 0.10 | 0.06 | 0.07 PPDB -1.6400 -2.2921 -2.8964 -2.6636 -2.6061 -2.2366
ATTED:At1g02400.html HeptamerElement:AATAATT | HeptamerElement:AATAATT AATAATT | AATAATT 236 | 332 0.06 | 0.06 PPDB 0.1625 0.4932 -0.5082 0.0952 0.1449 0.3624
ATTED:At1g02410.html HeptamerElement:TTGACTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT TTGACTT | TTGACTT | TTTGACT | AATAATT | TGGGCTT | TGGGCTT | AATAATT | TGGGCTT 40 | 48 | 49 | 113 | 149 | 173 | 307 | 412 0.08 | 0.08 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 PPDB -0.5273 -0.0136 -0.3467 -0.4621 -0.3598 -0.3286
ATTED:At1g02450.html HeptamerElement:AAATATC | HeptamerElement:AAATATC AAATATC | AAATATC 165 | 187 0.07 | 0.07 PPDB -1.1467 -2.4308 -2.5785 -2.5986 -2.2407 -2.5056
ATTED:At1g02460.html HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:AAGCCCA | HeptamerElement:GATATTT ATATAAA | TATATAA | ATATATA | TATATAT | AAGCCCA | GATATTT 47 | 48 | 49 | 50 | 68 | 126 0.08 | 0.10 | 0.09 | 0.10 | 0.09 | 0.09 TAIR9 0.0067 0.2309 0.1407 0.2450 -0.0506 -0.1010
ATTED:At1g02470.html HeptamerElement:AAAGTCA AAAGTCA 164 0.07 TAIR9 -4.4234 -3.9669 -4.6759 -4.4856 -4.2846 -4.3619
ATTED:At1g02475.html - - - - PPDB -3.3911 -2.6891 -2.5431 -2.7440 -2.4415 -2.5104
* Row count is limited to 100.