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Developmental Genomic (AtGenExpress + PPDB promoter motif) median

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Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally (PPDB). Gene Loci without expression data or motif data were removed from this database.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_PPDB_Flowering_median This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds_median
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf_median
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root_median
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling_median
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem_median
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant_median
This collection of Gene Expression Properties are associated with whole plant body parts.
Octamer_elements A list of the 8mer sequence motifs from PPDB. This table lists each 8mer along with the appropriate median position from the TSS, calculated from all 8mers.


License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#file_name AtGenExpress_PPDB_Root_median
#download_from http://linkdata.org/work/rdf1s705i
#namespace ATTED http://atted.jp/data/locus/
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s329i/Octamer_elements.html#
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp label:Col-0_root17 label:Col-0_root_MS1 label:Col-0_root_GM-8 label:Col-0_root_GM5-8 label:Col-0_root_GM-21 label:Col-0_root_GM5-21
#object_type_xsd string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 1.3319 1.5946 1.6035 1.5575 1.8180 1.6832
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 1.3319 1.5946 1.6035 1.5575 1.8180 1.6832
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 1.3319 1.5946 1.6035 1.5575 1.8180 1.6832
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 -1.2963 -0.8396 -0.8650 -0.8484 -0.7601 -0.7594
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 -1.2963 -0.8396 -0.8650 -0.8484 -0.7601 -0.7594
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 1.9279 1.8378 1.1564 1.2574 1.3170 1.8703
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 -2.2340 -1.8811 -2.1578 -2.0869 -2.1124 -2.1529
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 -2.2340 -1.8811 -2.1578 -2.0869 -2.1124 -2.1529
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 -2.2340 -1.8811 -2.1578 -2.0869 -2.1124 -2.1529
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 0.0642 0.2136 0.0474 0.1699 -0.4599 -0.6327
Gene:AT1G01100 OctamerElement:AtREG635 | OctamerElement:AtREG403 | OctamerElement:AtREG380 REG GCCCATCA | GGCCCATC | CGGCCCAT 59.5 | 60.5 | 61.5 TAIR9 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
Gene:AT1G01100 OctamerElement:AtREG475 | OctamerElement:AtREG358 | OctamerElement:AtREG354 | OctamerElement:AtREG361 | OctamerElement:AtREG386 REG GGGCCTAG | TGGGCCTA | ATGGGCCT | AATGGGCC | AAATGGGC 81.5 | 82.5 | 83.5 | 84.5 | 85.5 TAIR9 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
Gene:AT1G01100 OctamerElement:AtREG355 | OctamerElement:AtREG352 | OctamerElement:AtREG356 | OctamerElement:AtREG353 REG GCCCAATA | GGCCCAAT | AGGCCCAA | AAGGCCCA 120.5 | 121.5 | 122.5 | 123.5 TAIR9 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
Gene:AT1G01100 OctamerElement:AtREG533 | OctamerElement:AtREG469 | OctamerElement:AtREG421 REG TTGGGCTC | TTTGGGCT | ATTTGGGC 164.5 | 165.5 | 166.5 TAIR9 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
Gene:AT1G01100 OctamerElement:AtREG632 REG AAAGTCAA 182.5 TAIR9 0.6686 0.3898 0.0976 0.0129 0.1463 0.0801
Gene:AT1G01110 OctamerElement:AtREG599 REG GGTGTCGT 164.5 TAIR9 0.1377 -0.2369 -0.1382 -0.2493 -0.5613 -0.5869
Gene:AT1G01120 OctamerElement:AtREG620 REG CCCATATA 168.5 TAIR9 -0.8181 0.5956 0.1884 0.6408 0.3803 0.3472
Gene:AT1G01130 OctamerElement:AtREG611 | OctamerElement:AtREG417 | OctamerElement:AtREG355 REG CCAATAAG | CCCAATAA | GCCCAATA 83.5 | 84.5 | 85.5 TAIR9 -0.7068 -0.7988 -0.8156 -0.7073 -1.0113 -1.0405
Gene:AT1G01140 OctamerElement:AtREG395 REG GCGCGTGA 52.5 TAIR9 -3.6456 -3.1622 -4.1944 -3.8233 -4.3919 -4.1161
Gene:AT1G01140 OctamerElement:AtREG523 | OctamerElement:AtREG615 REG GGACCCAC | GGGACCCA 65.5 | 66.5 TAIR9 -3.6456 -3.1622 -4.1944 -3.8233 -4.3919 -4.1161
Gene:AT1G01140 OctamerElement:AtREG448 | OctamerElement:AtREG379 | OctamerElement:AtREG413 REG CGTGGCAT | ACGTGGCA | TACGTGGC 76.5 | 77.5 | 78.5 TAIR9 -3.6456 -3.1622 -4.1944 -3.8233 -4.3919 -4.1161
Gene:AT1G01160 OctamerElement:AtREG507 | OctamerElement:AtREG504 | OctamerElement:AtREG354 | OctamerElement:AtREG353 | OctamerElement:AtREG351 | OctamerElement:AtREG577 REG CCATGGGC | CATGGGCC | ATGGGCCT | TGGGCCTT | GGGCCTTA | GGCCTTAG 215.5 | 214.5 | 213.5 | 212.5 | 211.5 | 210.5 TAIR9 -0.1811 -0.0923 -0.1464 -0.4510 -0.1319 -0.1614
Gene:AT1G01160 OctamerElement:AtREG563 | OctamerElement:AtREG360 | OctamerElement:AtREG358 | OctamerElement:AtREG356 | OctamerElement:AtREG373 | OctamerElement:AtREG421 REG CTTAGGCC | TTAGGCCC | TAGGCCCA | AGGCCCAA | GGCCCAAA | GCCCAAAT 196.5 | 195.5 | 194.5 | 193.5 | 192.5 | 191.5 TAIR9 -0.1811 -0.0923 -0.1464 -0.4510 -0.1319 -0.1614
Gene:AT1G01160 OctamerElement:AtREG446 | OctamerElement:AtREG484 | OctamerElement:AtREG420 | OctamerElement:AtREG373 | OctamerElement:AtREG421 REG ATTGGCCC | TTGGCCCA | TGGCCCAA | GGCCCAAA | GCCCAAAT 168.5 | 167.5 | 166.5 | 165.5 | 164.5 TAIR9 -0.1811 -0.0923 -0.1464 -0.4510 -0.1319 -0.1614
Gene:AT1G01170 OctamerElement:AtREG386 REG GCCCATTT 63.5 TAIR9 -2.4412 -2.3034 -1.6806 -1.9616 -0.8082 -1.5404
Gene:AT1G01180 OctamerElement:AtREG470 | OctamerElement:AtREG557 | OctamerElement:AtREG632 REG AGACACGT | GACACGTA | AAAGTCAA 164.5 | 163.5 | 156.5 TAIR9 -0.0280 -0.0437 -0.0600 0.0035 0.0283 -0.0332
Gene:AT1G01230 OctamerElement:AtREG424 REG GGCCTATT 101.5 TAIR9 0.4673 0.7241 0.3993 0.5529 0.2552 0.2904
Gene:AT1G01240 OctamerElement:AtREG590 | OctamerElement:AtREG590 REG AACACGTG | CACGTGTT 133.5 | 131.5 TAIR9 -0.0747 -0.3533 -0.1787 -0.2360 0.0874 0.0131
Gene:AT1G01240 OctamerElement:AtREG527 | OctamerElement:AtREG569 | OctamerElement:AtREG520 REG GTGTCGTT | TGTCGTTT | GTCGTTTT 72.5 | 71.5 | 70.5 TAIR9 -0.0747 -0.3533 -0.1787 -0.2360 0.0874 0.0131
Gene:AT1G01260 OctamerElement:AtREG636 REG TAAGGGGT 171.5 TAIR9 -0.3041 -0.3305 -0.1408 -0.2482 0.0530 -0.0051
Gene:AT1G01260 OctamerElement:AtREG463 | OctamerElement:AtREG455 | OctamerElement:AtREG412 | OctamerElement:AtREG473 REG GACCCGGT | ACCCGGTT | CCGGTTTA | CGGTTTAA 114.5 | 113.5 | 111.5 | 110.5 TAIR9 -0.3041 -0.3305 -0.1408 -0.2482 0.0530 -0.0051
Gene:AT1G01320 OctamerElement:AtREG411 REG AGAGGCCC 144.5 TAIR9 -3.8910 -4.0941 -2.7029 -3.4020 -3.0569 -3.6264
Gene:AT1G01320 OctamerElement:AtREG396 | OctamerElement:AtREG357 | OctamerElement:AtREG361 | OctamerElement:AtREG354 | OctamerElement:AtREG358 | OctamerElement:AtREG360 | OctamerElement:AtREG563 REG CCCATTAA | GCCCATTA | GGCCCATT | AGGCCCAT | TAGGCCCA | TTAGGCCC | CTTAGGCC 159.5 | 160.5 | 161.5 | 162.5 | 163.5 | 164.5 | 165.5 TAIR9 -3.8910 -4.0941 -2.7029 -3.4020 -3.0569 -3.6264
Gene:AT1G01370 OctamerElement:AtREG642 REG AGGGGTAA 224.5 TAIR9 0.3349 -0.1483 -0.7055 -0.6589 -1.0451 -0.9576
Gene:AT1G01430 OctamerElement:AtREG608 REG AAGCCACG 199.5 TAIR9 -0.1292 -0.1514 -0.0090 0.0199 -0.5436 -0.7643
Gene:AT1G01470 OctamerElement:AtREG638 REG GACCGACT 65.5 TAIR9 1.6597 1.3095 1.1800 1.5135 1.0668 1.0583
Gene:AT1G01470 OctamerElement:AtREG588 REG TCACACGT 108.5 TAIR9 1.6597 1.3095 1.1800 1.5135 1.0668 1.0583
Gene:AT1G01470 OctamerElement:AtREG557 | OctamerElement:AtREG470 REG GACACGTA | AGACACGT 151.5 | 152.5 TAIR9 1.6597 1.3095 1.1800 1.5135 1.0668 1.0583
Gene:AT1G01480 OctamerElement:AtREG591 REG CCCATGGG 74.5 TAIR9 0.3151 0.3352 0.0637 0.1273 -0.4528 -0.1368
Gene:AT1G01490 OctamerElement:AtREG395 REG TCACGCGC 209.5 TAIR9 -0.8795 0.2064 0.2764 0.5532 0.4502 0.3622
Gene:AT1G01490 OctamerElement:AtREG486 REG CACGCGCC 222.5 TAIR9 -0.8795 0.2064 0.2764 0.5532 0.4502 0.3622
Gene:AT1G01500 OctamerElement:AtREG426 | OctamerElement:AtREG378 | OctamerElement:AtREG372 | OctamerElement:AtREG386 | OctamerElement:AtREG443 | OctamerElement:AtREG610 REG TAAGCCCA | AAGCCCAT | AGCCCATT | GCCCATTT | CCCATTTA | TTTAACGG 221.5 | 220.5 | 219.5 | 218.5 | 217.5 | 213.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG437 | OctamerElement:AtREG458 | OctamerElement:AtREG384 REG ATGGCCCA | TGGCCCAG | GGCCCAGT 191.5 | 190.5 | 189.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG589 REG AAAAAGCC 156.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG588 | OctamerElement:AtREG460 | OctamerElement:AtREG541 REG TCACACGT | CACACGTG | CACGTGCG 137.5 | 136.5 | 134.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG567 | OctamerElement:AtREG602 REG AGGGTATT | GGGTATTT 110.5 | 109.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG592 REG TTTGACCC 80.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01500 OctamerElement:AtREG646 REG CGTAATTA 69.5 TAIR9 -0.7231 -0.1854 -0.2224 -0.3760 -0.1556 -0.3092
Gene:AT1G01510 OctamerElement:AtREG540 | OctamerElement:AtREG537 | OctamerElement:AtREG439 | OctamerElement:AtREG415 | OctamerElement:AtREG565 REG ACGGCGTC | GGCGTCGT | GCGTCGTT | CGTCGTTT | GTCGTTTA 208.5 | 206.5 | 205.5 | 204.5 | 203.5 TAIR9 0.5324 0.0643 0.3192 0.1264 0.1564 0.0298
Gene:AT1G01510 OctamerElement:AtREG578 REG GATGACGT 179.5 TAIR9 0.5324 0.0643 0.3192 0.1264 0.1564 0.0298
Gene:AT1G01510 OctamerElement:AtREG529 | OctamerElement:AtREG373 | OctamerElement:AtREG392 | OctamerElement:AtREG400 REG TTTTGGGC | TTTGGGCC | TTGGGCCC | TGGGCCCT 112.5 | 111.5 | 110.5 | 109.5 TAIR9 0.5324 0.0643 0.3192 0.1264 0.1564 0.0298
Gene:AT1G01540 OctamerElement:AtREG630 REG CGACATCG 155.5 TAIR9 -0.4733 -0.7322 -0.6992 -0.6696 -0.7048 -0.7544
Gene:AT1G01550 OctamerElement:AtREG632 REG TTGACTTT 194.5 TAIR9 0.5447 0.2707 0.3944 0.0581 0.9004 0.7987
Gene:AT1G01560 OctamerElement:AtREG507 REG CCATGGGC 203.5 TAIR9 -0.8203 -0.4136 -1.6239 -1.2193 -0.9728 -1.0063
Gene:AT1G01620 OctamerElement:AtREG553 | OctamerElement:AtREG554 REG CAACGGTC | TCCAACGG 444.5 | 446.5 TAIR9 1.4047 0.7413 1.1772 0.7771 1.0206 0.5285
Gene:AT1G01620 OctamerElement:AtREG475 REG CTAGGCCC 525.5 TAIR9 1.4047 0.7413 1.1772 0.7771 1.0206 0.5285
Gene:AT1G01630 OctamerElement:AtREG440 | OctamerElement:AtREG419 | OctamerElement:AtREG485 REG CTGACGTG | TGACGTGG | TGGGCTCA 208.5 | 207.5 | 202.5 TAIR9 0.0471 0.5733 0.3462 0.5235 0.1147 0.1869
Gene:AT1G01630 OctamerElement:AtREG531 REG AAAACGGC 187.5 TAIR9 0.0471 0.5733 0.3462 0.5235 0.1147 0.1869
Gene:AT1G01630 OctamerElement:AtREG533 | OctamerElement:AtREG402 | OctamerElement:AtREG355 | OctamerElement:AtREG624 REG GAGCCCAA | AGCCCAAT | GCCCAATA | CCCAATAG 104.5 | 103.5 | 102.5 | 101.5 TAIR9 0.0471 0.5733 0.3462 0.5235 0.1147 0.1869
Gene:AT1G01630 OctamerElement:AtREG425 | OctamerElement:AtREG351 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG352 | OctamerElement:AtREG355 REG ATAAGGCC | TAAGGCCC | AAGGCCCA | AGGCCCAA | GGCCCAAT | GCCCAATA 87.5 | 86.5 | 85.5 | 84.5 | 83.5 | 82.5 TAIR9 0.0471 0.5733 0.3462 0.5235 0.1147 0.1869
Gene:AT1G01650 OctamerElement:AtREG564 | OctamerElement:AtREG626 REG GCGTTTTA | CAGCGTTT 1082.5 | 1084.5 TAIR9 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
Gene:AT1G01650 OctamerElement:AtREG632 REG AAAGTCAA 1095.5 TAIR9 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
Gene:AT1G01650 OctamerElement:AtREG486 REG CACGCGCC 1129.5 TAIR9 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
Gene:AT1G01650 OctamerElement:AtREG536 REG ACACGCGT 1139.5 TAIR9 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
Gene:AT1G01650 OctamerElement:AtREG449 | OctamerElement:AtREG420 | OctamerElement:AtREG484 REG GGCCCAAC | TGGCCCAA | TTGGCCCA 182.5 | 183.5 | 184.5 TAIR9 0.2016 -0.3431 -0.2113 -0.3288 -0.1002 -0.2827
Gene:AT1G01670 OctamerElement:AtREG428 | OctamerElement:AtREG478 | OctamerElement:AtREG481 | OctamerElement:AtREG517 | OctamerElement:AtREG466 | OctamerElement:AtREG489 REG CGTGTCGT | ACGTGTCG | GACGTGTC | TGACGTGT | GTGACGTG | CGTGACGT 62.5 | 63.5 | 64.5 | 65.5 | 66.5 | 67.5 TAIR9 0.1749 0.0125 -0.1300 -0.0871 0.2095 0.2219
Gene:AT1G01690 OctamerElement:AtREG417 REG TTATTGGG 188.5 TAIR9 -0.2636 -0.1368 -0.2447 -0.2127 -0.1522 -0.0251
Gene:AT1G01690 OctamerElement:AtREG364 | OctamerElement:AtREG490 | OctamerElement:AtREG437 REG TATGGGCC | ATGGGCCA | TGGGCCAT 169.5 | 168.5 | 167.5 TAIR9 -0.2636 -0.1368 -0.2447 -0.2127 -0.1522 -0.0251
Gene:AT1G01690 OctamerElement:AtREG558 | OctamerElement:AtREG357 | OctamerElement:AtREG372 | OctamerElement:AtREG378 | OctamerElement:AtREG376 | OctamerElement:AtREG365 | OctamerElement:AtREG601 | OctamerElement:AtREG394 | OctamerElement:AtREG364 | OctamerElement:AtREG354 | OctamerElement:AtREG447 | OctamerElement:AtREG411 REG CTAATGGG | TAATGGGC | AATGGGCT | ATGGGCTT | TGGGCTTT | GGGCTTTA | GGCTTTAT | TTATGGGC | TATGGGCC | ATGGGCCT | TGGGCCTC | GGGCCTCT 149.5 | 148.5 | 147.5 | 146.5 | 145.5 | 144.5 | 143.5 | 139.5 | 138.5 | 137.5 | 136.5 | 135.5 TAIR9 -0.2636 -0.1368 -0.2447 -0.2127 -0.1522 -0.0251
Gene:AT1G01710 OctamerElement:AtREG504 | OctamerElement:AtREG490 | OctamerElement:AtREG437 REG CATGGGCC | ATGGGCCA | TGGGCCAT 277.5 | 276.5 | 275.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG416 | OctamerElement:AtREG416 | OctamerElement:AtREG545 REG TTAAGGCC | GGCCTTAA | TTAAAGCC 239.5 | 235.5 | 231.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG396 | OctamerElement:AtREG357 | OctamerElement:AtREG361 | OctamerElement:AtREG354 | OctamerElement:AtREG353 | OctamerElement:AtREG398 REG TTAATGGG | TAATGGGC | AATGGGCC | ATGGGCCT | TGGGCCTT | GGGCCTTG 222.5 | 221.5 | 220.5 | 219.5 | 218.5 | 217.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG590 | OctamerElement:AtREG628 REG AACACGTG | ACACGTGA 93.5 | 92.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG575 REG CGAACCGA 71.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG513 REG GTCCACGT 63.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01710 OctamerElement:AtREG598 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG ATAAACCG | TAAACCGG | AAACCGGA 47.5 | 46.5 | 45.5 TAIR9 -0.5658 -0.5743 -0.4528 -0.2869 -0.2043 -0.1748
Gene:AT1G01720 OctamerElement:AtREG644 REG ACCGGAAA 280.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG451 REG GGTTCGGT 242.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG576 | OctamerElement:AtREG569 REG GAAACGAC | AAACGACA 183.5 | 182.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG471 | OctamerElement:AtREG371 | OctamerElement:AtREG388 | OctamerElement:AtREG419 | OctamerElement:AtREG440 | OctamerElement:AtREG515 REG TCGCCACG | CGCCACGT | GCCACGTC | CCACGTCA | CACGTCAG | ACGTCAGC 146.5 | 145.5 | 144.5 | 143.5 | 142.5 | 141.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG472 REG ACGTGTCC 113.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG464 | OctamerElement:AtREG382 | OctamerElement:AtREG460 REG CCCACGTG | CCACGTGT | CACGTGTG 90.5 | 89.5 | 88.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01720 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG366 | OctamerElement:AtREG472 REG CGACACGT | GACACGTG | CACGTGTC | ACGTGTCC 50.5 | 49.5 | 47.5 | 46.5 TAIR9 1.2071 0.2888 0.6394 0.2350 0.7328 1.1954
Gene:AT1G01730 OctamerElement:AtREG520 | OctamerElement:AtREG569 | OctamerElement:AtREG527 REG GTCGTTTT | AAACGACA | AACGACAC 169.5 | 168.5 | 167.5 TAIR9 0.2002 0.0676 0.1307 -0.0419 0.4807 0.3894
* Row count is limited to 100.