AtGenExpress_PPDB_Flowering_median | This collection of Gene Expression Properties are associated with flowering tissues. |
AtGenExpress_PPDB_Fruit_Seeds_median |
This collection of Gene Expression Properties are associated with fruit and seed tissues. |
AtGenExpress_PPDB_Leaf_median |
This collection of Gene Expression Properties are associated with leaf tissues. |
AtGenExpress_PPDB_Root_median |
This collection of Gene Expression Properties are associated with root tissues. |
AtGenExpress_PPDB_Seedling_median |
This collection of Gene Expression Properties are associated with seedling tissues. |
AtGenExpress_PPDB_Stem_median |
This collection of Gene Expression Properties are associated with stem tissues. |
AtGenExpress_PPDB_Whole_Plant_median |
This collection of Gene Expression Properties are associated with whole plant body parts. |
Octamer_elements | A list of the 8mer sequence motifs from PPDB. This table lists each 8mer along with the appropriate median position from the TSS, calculated from all 8mers. |
We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition.
License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi
value
#LINK | |||||
#lang | en | ||||
#attribution_name | GenoCon | ||||
#attribution_url | http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/all_tag_list.cgi?organism=At | ||||
#file_name | Octamer_elements | ||||
#download_from | http://linkdata.org/work/rdf1s705i | ||||
#namespace | REGoctamer | http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/tag_list.cgi?organism=At&tag= | |||
#property | # of entry | motif sequence | PPDB motif | PLACE motif | Appropriate position |
#object_type_xsd | integer | string:en | string:en | string:en | float |
#property_context | Assertion | Assertion | Assertion | Assertion | Assertion |
REGoctamer:AtREG351 | 328 | GGGCCTTA | TAAGGCCC | GCCCA | GGGCC | 119.5 |
REGoctamer:AtREG352 | 678 | ATTGGGCC | GGCCCAAT | GCCCA | GGGCC, TGGGCY | 119.5 |
REGoctamer:AtREG353 | 782 | AAGGCCCA | TGGGCCTT | GCCCA | GGGCC, TGGGCY | 116.5 |
REGoctamer:AtREG354 | 843 | AGGCCCAT | ATGGGCCT | GCCCA | GGGCC, TGGGCY | 112.5 |
REGoctamer:AtREG355 | 664 | GCCCAATA | TATTGGGC | GCCCA | 117.5 | |
REGoctamer:AtREG356 | 724 | AGGCCCAA | TTGGGCCT | GCCCA | GGGCC, TGGGCY | 119.5 |
REGoctamer:AtREG357 | 755 | GCCCATTA | TAATGGGC | GCCCA | 114.5 | |
REGoctamer:AtREG358 | 599 | TAGGCCCA | TGGGCCTA | GCCCA | GGGCC, TGGGCY | 114.5 |
REGoctamer:AtREG359 | 368 | AAAGGCCC | GGGCCTTT | GCCCA | GGGCC | 109.5 |
REGoctamer:AtREG360 | 305 | GGGCCTAA | TTAGGCCC | GCCCA | GGGCC | 116.5 |
REGoctamer:AtREG361 | 795 | AATGGGCC | GGCCCATT | GCCCA | GGGCC, TGGGCY | 114.5 |
REGoctamer:AtREG362 | 235 | ATAGGCCC | GGGCCTAT | GCCCA | GGGCC | 114 |
REGoctamer:AtREG363 | 34 | CTGGGCCC | GGGCCCAG | GCCCA | GGGCC, TGGGCY | 124.5 |
REGoctamer:AtREG364 | 407 | GGCCCATA | TATGGGCC | GCCCA | GGGCC, TGGGCY | 108.5 |
REGoctamer:AtREG365 | 363 | GGGCTTTA | TAAAGCCC | GCCCA | 116.5 | |
REGoctamer:AtREG366 | 484 | CACGTGTC | GACACGTG | ACGT | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | 114.5 |
REGoctamer:AtREG367 | 372 | CACGTGGC | GCCACGTG | ACGT | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | 115.5 |
REGoctamer:AtREG368 | 166 | ACGGCCCA | TGGGCCGT | GCCCA | GGGCC, TGGGCY | 107.5 |
REGoctamer:AtREG369 | 52 | ACGCTGCG | CGCAGCGT | 120.5 | ||
REGoctamer:AtREG370 | 234 | CAGGCCCA | TGGGCCTG | GCCCA | GGGCC, TGGGCY | 120.5 |
REGoctamer:AtREG371 | 187 | ACGTGGCG | CGCCACGT | ACGT | ACGT, ACGTG, GCCAC, ACGTGKC | 117 |
REGoctamer:AtREG372 | 605 | AATGGGCT | AGCCCATT | GCCCA | TGGGCY | 120.5 |
REGoctamer:AtREG373 | 467 | GGCCCAAA | TTTGGGCC | GCCCA | GGGCC, TGGGCY | 122.5 |
REGoctamer:AtREG374 | 110 | GGGCCTGA | TCAGGCCC | GCCCA | GGGCC | 114.5 |
REGoctamer:AtREG375 | 167 | CCGACCCG | CGGGTCGG | CCGAC | CCGAC | 97.5 |
REGoctamer:AtREG376 | 877 | AAAGCCCA | TGGGCTTT | GCCCA | TGGGCY | 117.5 |
REGoctamer:AtREG377 | 77 | AACGGCCC | GGGCCGTT | GCCCA, AAACG(C/G) | GGGCC | 112 |
REGoctamer:AtREG378 | 747 | AAGCCCAT | ATGGGCTT | GCCCA | TGGGCY | 116.5 |
REGoctamer:AtREG379 | 350 | ACGTGGCA | TGCCACGT | ACGT | ACGT, ACGTG, GCCAC, ACGTGKC | 114.5 |
REGoctamer:AtREG380 | 228 | ATGGGCCG | CGGCCCAT | GCCCA | GGGCC, TGGGCY | 107.5 |
REGoctamer:AtREG381 | 124 | AGCGCGTG | CACGCGCT | ACGCGC | 136.5 | |
REGoctamer:AtREG382 | 379 | ACACGTGG | CCACGTGT | ACGT | ACGT, ACGTG, CACGTG, ACACNNG | 116.5 |
REGoctamer:AtREG383 | 119 | CGACCCGA | TCGGGTCG | 111.5 | ||
REGoctamer:AtREG384 | 109 | ACTGGGCC | GGCCCAGT | GCCCA | GGGCC, TGGGCY | 116 |
REGoctamer:AtREG385 | 71 | ACACGCGC | GCGCGTGT | ACGCGC | ACACNNG | 127.5 |
REGoctamer:AtREG386 | 518 | AAATGGGC | GCCCATTT | GCCCA | 125.5 | |
REGoctamer:AtREG387 | 40 | GGGCCCTA | TAGGGCCC | GCCCA | GGGCC | 149.5 |
REGoctamer:AtREG388 | 207 | GACGTGGC | GCCACGTC | ACGT | ACGT, ACGTG, GCCAC, ACGTGKC | 111 |
REGoctamer:AtREG389 | 360 | ACGTGTCA | TGACACGT | ACGT | ACGT, ACGTG, ACGTGKC, ACGTGTC | 121.5 |
REGoctamer:AtREG390 | 96 | GACCCGAC | GTCGGGTC | CCGAC, GGGACCC | CCGAC | 100.5 |
REGoctamer:AtREG391 | 157 | ATGGGCCC | GGGCCCAT | GCCCA | GGGCC, TGGGCY | 127 |
REGoctamer:AtREG392 | 186 | GGGCCCAA | TTGGGCCC | GCCCA | GGGCC, TGGGCY | 129.5 |
REGoctamer:AtREG393 | 224 | TCGGCCCA | TGGGCCGA | GCCCA | GGGCC, TGGGCY | 116.5 |
REGoctamer:AtREG394 | 284 | GCCCATAA | TTATGGGC | GCCCA | 119.5 | |
REGoctamer:AtREG395 | 112 | GCGCGTGA | TCACGCGC | ACGCGC | 119.5 | |
REGoctamer:AtREG396 | 495 | CCCATTAA | TTAATGGG | GCCCA | TTAATGG | 120.5 |
REGoctamer:AtREG397 | 72 | GGCCCAGA | TCTGGGCC | GCCCA | GGGCC, TGGGCY | 114.5 |
REGoctamer:AtREG398 | 104 | CAAGGCCC | GGGCCTTG | GCCCA | GGGCC | 128.5 |
REGoctamer:AtREG399 | 61 | GCCCGTTA | TAACGGGC | ACGGGC | YAACKG, CNGTTR | 117.5 |
REGoctamer:AtREG400 | 84 | AGGGCCCA | TGGGCCCT | GCCCA | GGGCC, TGGGCY | 140.5 |
REGoctamer:AtREG401 | 72 | AACGGGCC | GGCCCGTT | AAACG(C/G), ACGGGC, CCAACGG | GGGCC | 118.5 |
REGoctamer:AtREG402 | 459 | AGCCCAAT | ATTGGGCT | GCCCA | TGGGCY | 116.5 |
REGoctamer:AtREG403 | 150 | GATGGGCC | GGCCCATC | GCCCA | GGGCC, TGGGCY | 139.5 |
REGoctamer:AtREG404 | 53 | CCCGGCCC | GGGCCGGG | GCCCA | GGGCC | 114 |
REGoctamer:AtREG405 | 145 | ACCCGACC | GGTCGGGT | CCGAC | CCGAC | 92.5 |
REGoctamer:AtREG406 | 87 | GGTCCCAC | GTGGGACC | GGGACCC | 134 | |
REGoctamer:AtREG407 | 719 | AAGCCCAA | TTGGGCTT | GCCCA | TGGGCY | 116.5 |
REGoctamer:AtREG408 | 269 | CACGTGGA | TCCACGTG | ACGT | ACGT, ACGTG, CACGTG | 125.5 |
REGoctamer:AtREG409 | 445 | AAAAGCCC | GGGCTTTT | GCCCA | 113.5 | |
REGoctamer:AtREG410 | 110 | AGGCCCAG | CTGGGCCT | GCCCA | GGGCC, TGGGCY | 115.5 |
REGoctamer:AtREG411 | 75 | AGAGGCCC | GGGCCTCT | GCCCA | GGGCC | 118 |
REGoctamer:AtREG412 | 470 | CCGGTTTA | TAAACCGG | AACCG(G/A) | 116.5 | |
REGoctamer:AtREG413 | 138 | GCCACGTA | TACGTGGC | ACGT | ACGT, ACGTG, GCCAC, ACGTGKC | 127.5 |
REGoctamer:AtREG414 | 202 | CGGCCCAA | TTGGGCCG | GCCCA | GGGCC, TGGGCY | 113.5 |
REGoctamer:AtREG415 | 323 | AAACGACG | CGTCGTTT | 104 | ||
REGoctamer:AtREG416 | 185 | GGCCTTAA | TTAAGGCC | 120 | ||
REGoctamer:AtREG417 | 451 | CCCAATAA | TTATTGGG | GCCCA | 123 | |
REGoctamer:AtREG418 | 317 | AATTGGGC | GCCCAATT | GCCCA | 126 | |
REGoctamer:AtREG419 | 289 | CCACGTCA | TGACGTGG | ACGT | ACGT, ACGTG, TGACGTGG, CCACGTCA | 123.5 |
REGoctamer:AtREG420 | 279 | TGGCCCAA | TTGGGCCA | GCCCA | GGGCC, TGGGCY | 130 |
REGoctamer:AtREG421 | 345 | ATTTGGGC | GCCCAAAT | GCCCA | 123 | |
REGoctamer:AtREG422 | 136 | TGGGCCCA | TGGGCCCA | GCCCA | GGGCC, TGGGCY | 129.5 |
REGoctamer:AtREG423 | 150 | CCGGTTCG | CGAACCGG | AACCG(G/A) | 123.5 | |
REGoctamer:AtREG424 | 156 | AATAGGCC | GGCCTATT | 127.5 | ||
REGoctamer:AtREG425 | 162 | ATAAGGCC | GGCCTTAT | AACCG(G/A) | 120.5 | |
REGoctamer:AtREG426 | 443 | TAAGCCCA | TGGGCTTA | GCCCA | TGGGCY | 118.5 |
REGoctamer:AtREG427 | 111 | GGGCCGAA | TTCGGCCC | GCCCA | GGGCC | 107 |
REGoctamer:AtREG428 | 106 | ACGACACG | CGTGTCGT | 120.5 | ||
REGoctamer:AtREG429 | 49 | ACGGGCCT | AGGCCCGT | ACGGGC | GGGCC | 118.5 |
REGoctamer:AtREG430 | 183 | GGCCTAAA | TTTAGGCC | 119.5 | ||
REGoctamer:AtREG431 | 243 | ACGACGTC | GACGTCGT | ACGT | ACGT | 98.5 |
REGoctamer:AtREG432 | 332 | ATATGGGC | GCCCATAT | GCCCA | 112.5 | |
REGoctamer:AtREG433 | 85 | ACAGGCCC | GGGCCTGT | GCCCA | GGGCC | 128.5 |
REGoctamer:AtREG434 | 77 | GCCCAGTA | TACTGGGC | GCCCA | 116.5 | |
REGoctamer:AtREG435 | 59 | GGGCCTAC | GTAGGCCC | GCCCA | GGGCC | 118 |
REGoctamer:AtREG436 | 395 | AAACCGGT | ACCGGTTT | AACCG(G/A) | 119 | |
REGoctamer:AtREG437 | 215 | ATGGCCCA | TGGGCCAT | GCCCA | GGGCC, TGGGCY | 139 |
REGoctamer:AtREG438 | 152 | ATGACACG | CGTGTCAT | 128.5 | ||
REGoctamer:AtREG439 | 79 | AACGACGC | GCGTCGTT | 104.5 | ||
REGoctamer:AtREG440 | 132 | CACGTCAG | CTGACGTG | ACGT | ACGT, ACGTG | 125.5 |