Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) mean

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the mean of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering_mean	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_mean	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_mean	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_mean	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_mean	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_mean	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_mean	This collection of Gene Expression Properties are associated with whole plant body parts.

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File Name
AtGenExpress_ATTED_Flowering_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	4.5MB
Table Data (Excel)	2013.4.22	8.1MB
RDF (Turtle)	2013.4.22	35.3MB
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AtGenExpress_ATTED_Fruit_Seeds_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	2.7MB
Table Data (Excel)	2013.4.22	4.5MB
RDF (Turtle)	2013.4.22	13.8MB
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AtGenExpress_ATTED_Leaf_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	3.3MB
Table Data (Excel)	2013.4.22	5.7MB
RDF (Turtle)	2013.4.22	21.3MB
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AtGenExpress_ATTED_Root_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	2.5MB
Table Data (Excel)	2013.4.22	4.1MB
RDF (Turtle)	2013.4.22	12.3MB
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AtGenExpress_ATTED_Seedling_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	3.0MB
Table Data (Excel)	2013.4.22	5.1MB
RDF (Turtle)	2013.4.22	17.7MB
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AtGenExpress_ATTED_Stem_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	2.3MB
Table Data (Excel)	2013.4.22	3.6MB
RDF (Turtle)	2013.4.22	9.4MB
		その他の形式のAPIリストを表示
AtGenExpress_ATTED_Whole_Plant_mean			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.22	2.3MB
Table Data (Excel)	2013.4.22	3.5MB
RDF (Turtle)	2013.4.22	9.4MB
		その他の形式のAPIリストを表示

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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://atted.jp/ http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/171... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	581
Created date	Apr 22, 2013
Last update date	Apr 25, 2013

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Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) mean

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