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DIURNAL gene expression + PLACE promoter motif

Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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DiurnalHours_PLACE_COL_LDHH
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.5MB
DiurnalHours_PLACE_COL_SD
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.0MB
DiurnalHours_PLACE_DD_DDHC
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_LDHC
Table Data (Text)
2013.4.11
8.1MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
45.4MB
DiurnalHours_PLACE_LDHH_SM
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_LDHH_ST
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_LER_SD
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.0MB
DiurnalHours_PLACE_LIGHT5_HIF138_13
Table Data (Text)
2013.4.11
8.4MB
Table Data (Excel)
2013.4.11
14.5MB
RDF (Turtle)
2013.4.11
48.7MB
DiurnalHours_PLACE_LIGHT5_HIF138_8
Table Data (Text)
2013.4.11
8.4MB
Table Data (Excel)
2013.4.11
14.5MB
RDF (Turtle)
2013.4.11
48.5MB
DiurnalHours_PLACE_LIGHT5_znknOX
Table Data (Text)
2013.4.11
8.3MB
Table Data (Excel)
2013.4.11
14.5MB
RDF (Turtle)
2013.4.11
47.9MB
DiurnalHours_PLACE_LL12_LDHH
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.8MB
DiurnalHours_PLACE_LL23_LDHH
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.8MB
DiurnalHours_PLACE_LLHC
Table Data (Text)
2013.4.11
8.1MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
45.4MB
DiurnalHours_PLACE_LL_LDHC
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_LL_LLHC
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_lhyox_SD
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.5MB
DiurnalHours_PLACE_longday
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.3MB
DiurnalHours_PLACE_lux_2_LDHH
Table Data (Text)
2013.4.11
8.3MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
47.1MB
DiurnalHours_PLACE_phyB9_SD
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.8MB
RDF (Turtle)
2013.4.11
46.5MB
DiurnalHours_PLACE_shortday
Table Data (Text)
2013.4.11
8.2MB
Table Data (Excel)
2013.4.11
15.9MB
RDF (Turtle)
2013.4.11
46.6MB
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Total downloads 819
Created date Apr 11, 2013
Last update date Apr 25, 2013

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