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Developmental Coexpression (AtGenExpress Developmental gene expression + ATTED-II promoter motif) Triplicate Data

Full triplicate expression dataset of AtGenExpress plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). MotifExpress tool allows the plloting of all triplicate data points during the design process, so the user has some idea of the experimental variation in the measurements.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_ATTED_Flowering
This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant
This collection of Gene Expression Properties are associated with whole plant body parts.
7

value

useful
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name AtGenExpress_ATTED_Whole_Plant
#download_from http://linkdata.org/work/rdf1s781i
#namespace ATTED http://atted.jp/data/locus/
#namespace HeptamerElement http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif sequence motif position CEG Origin of baseline sequence label:Col-0_whole21d label:Col-0_whole22d label:Col-0_whole23d
#object_type_xsd string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html - - - - TAIR9 -0.4239 | -0.5089 | -0.3898 -0.4611 | -0.623 | -0.1295 -0.4795 | -0.3702 | -0.1957
ATTED:At1g01050.html HeptamerElement:ATATAAA ATATAAA 65 0.08 PPDB 0.1759 | 0.1831 | 0.1243 0.1437 | 0.1642 | 0.2404 -0.0336 | 0.0367 | 0.0888
ATTED:At1g01060.html HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 168 | 169 | 170 0.09 | 0.10 | 0.07 PPDB -0.0444 | -0.5047 | 0.1005 0.5907 | 0.6436 | 0.6474 1.0496 | 0.1637 | 0.5117
ATTED:At1g01070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT | AAAATAT 113 | 114 | 183 | 524 0.08 | 0.10 | 0.07 | 0.07 PPDB 0.0824 | 0.1357 | 0.5446 0.6418 | 0.3656 | 0.2567 0.0136 | 0.2268 | 0.1954
ATTED:At1g01080.html HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 287 | 288 0.08 | 0.09 PPDB 1.0802 | 1.2234 | 1.093 1.2172 | 1.1779 | 1.336 0.9599 | 1.0305 | 1.0006
ATTED:At1g01090.html HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 43 | 44 | 45 | 46 0.11 | 0.10 | 0.10 | 0.10 PPDB -0.2524 | -0.1984 | -0.0639 -0.0839 | -0.1079 | -0.2009 -0.2515 | -0.0086 | -0.2178
ATTED:At1g01100.html HeptamerElement:TATAAAC | HeptamerElement:GGCCCAT | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC | HeptamerElement:AGGCCCA | HeptamerElement:AAGTCAA | HeptamerElement:AAAGTCA TATAAAC | GGCCCAT | GGGCCTA | TGGGCCT | ATGGGCC | AATGGGC | AGGCCCA | AAGTCAA | AAAGTCA 33 | 61 | 82 | 83 | 84 | 85 | 123 | 182 | 183 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.09 | 0.08 | 0.07 | 0.07 PPDB -0.0825 | -0.0115 | -0.0415 -0.0871 | -0.0329 | -0.2592 -0.1877 | -0.0046 | -0.0925
ATTED:At1g01110.html - - - - PPDB -0.963 | -0.5444 | -0.3769 -0.1248 | -0.2857 | -0.5641 -0.2855 | -0.1287 | -0.1792
ATTED:At1g01130.html HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCAAT AAGCCCA | AAAGCCC | GCCCAAT 36 | 37 | 86 0.07 | 0.06 | 0.07 PPDB -0.3752 | -0.6164 | -0.1946 -0.5281 | -0.6571 | -0.776 -0.3742 | -0.3026 | -0.6765
ATTED:At1g01140.html HeptamerElement:ACGTGGC | HeptamerElement:ACGCGGA ACGTGGC | ACGCGGA 78 | 113 0.07 | 0.07 PPDB 1.1696 | 1.347 | 0.5359 0.4398 | 0.4886 | 0.4338 0.8716 | 0.5324 | 0.7527
ATTED:At1g01150.html HeptamerElement:AAACCCT | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC AAACCCT | AAACCCT | TAAACCC 382 | 407 | 408 0.14 | 0.14 | 0.10 TAIR9 -0.0333 | 0.0664 | -0.0539 -0.008 | -0.1478 | 0.1725 0.1031 | -0.1013 | -0.0224
ATTED:At1g01160.html HeptamerElement:GGCCCAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:GGGCCTT GGCCCAA | GGCCCAA | AGGCCCA | GGGCCTT 166 | 193 | 194 | 212 0.07 | 0.07 | 0.07 | 0.06 PPDB -0.3891 | -0.8125 | -0.6071 -0.6309 | -0.7525 | -0.4467 -0.5749 | -0.4163 | -0.4825
ATTED:At1g01170.html HeptamerElement:GATAAGA | HeptamerElement:AGATAAG | HeptamerElement:TTATCCA | HeptamerElement:GCCCATT GATAAGA | AGATAAG | TTATCCA | GCCCATT 18 | 19 | 38 | 64 0.06 | 0.06 | 0.09 | 0.10 PPDB 0.4365 | 0.578 | 0.5245 0.4114 | 0.4944 | 0.4041 0.489 | 0.4792 | 0.53
ATTED:At1g01200.html HeptamerElement:ATATAAA | HeptamerElement:ATATAAA | HeptamerElement:ATATAAA ATATAAA | ATATAAA | ATATAAA 38 | 298 | 322 0.08 | 0.08 | 0.08 TAIR9 0.044 | 0.0478 | -0.0037 0.3262 | 0.103 | 0.0547 0.3442 | -0.0686 | 0.0673
ATTED:At1g01220.html HeptamerElement:CTCCAGA | HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT CTCCAGA | TGACTTT | TTGACTT | TTTGACT 43 | 108 | 109 | 110 0.06 | 0.06 | 0.07 | 0.07 TAIR9 0.3712 | 0.4466 | 0.505 0.4402 | 0.6362 | 0.5073 0.6804 | 0.5846 | 0.577
ATTED:At1g01225.html HeptamerElement:TCTCTAG TCTCTAG 95 0.06 TAIR9 -0.6575 | -0.3298 | -0.2477 -0.1618 | -0.5223 | -0.2705 -0.506 | -0.2063 | -0.3237
ATTED:At1g01230.html HeptamerElement:AAATATC AAATATC 43 0.13 PPDB 0.0047 | 0.1978 | 0.0541 0.1888 | 0.1692 | 0.1629 0.1016 | 0.1975 | 0.3053
ATTED:At1g01240.html HeptamerElement:CAGCTGT | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:ACACGTG CAGCTGT | CACGTGT | ACACGTG | CACGTGT | ACACGTG | ACACGTG 117 | 132 | 133 | 477 | 478 | 518 0.07 | 0.11 | 0.10 | 0.11 | 0.10 | 0.10 PPDB 0.0614 | 0.0378 | 0.4793 0.6633 | 0.5488 | 0.1986 0.8138 | 0.4518 | 0.4121
ATTED:At1g01280.html HeptamerElement:TATATAT TATATAT 39 0.10 TAIR9 -0.3762 | -0.5201 | -0.1354 -0.4028 | -0.3637 | -0.1864 -0.2333 | 0.2086 | -0.2337
ATTED:At1g01290.html HeptamerElement:AACCCTA AACCCTA 32 0.13 TAIR9 -0.3953 | -0.0771 | -0.369 0.1393 | 0.0754 | 0.136 0.2465 | 0.1857 | 0.1358
ATTED:At1g01300.html HeptamerElement:GATATTT | HeptamerElement:AGATATT | HeptamerElement:TTATCCA GATATTT | AGATATT | TTATCCA 128 | 129 | 177 0.10 | 0.10 | 0.06 PPDB -0.3668 | -0.1629 | -0.254 -0.2074 | -0.2173 | -0.333 -0.6437 | 0.115 | 0.0082
ATTED:At1g01310.html HeptamerElement:TGACTTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:CATGCAT | HeptamerElement:CCATGCA TGACTTT | TTGACTT | TTTGACT | CATGCAT | CCATGCA 52 | 53 | 54 | 60 | 61 0.06 | 0.07 | 0.06 | 0.06 | 0.07 TAIR9 -0.5341 | -0.4627 | -0.4244 -0.644 | -0.5049 | -0.522 -0.4151 | -0.6507 | -0.4992
ATTED:At1g01320.html - - - - PPDB 0.8753 | 0.9369 | 0.8903 0.9476 | 0.9491 | 1.2553 1.0609 | 1.0602 | 1.0154
ATTED:At1g01430.html HeptamerElement:CATGCAA | HeptamerElement:CCGACAT | HeptamerElement:AATATCT CATGCAA | CCGACAT | AATATCT 150 | 191 | 223 0.08 | 0.06 | 0.07 PPDB 0.3403 | 0.0533 | 0.4299 0.6657 | 0.6644 | 0.3987 0.2844 | 0.5088 | 0.3499
ATTED:At1g01440.html - - - - PPDB -0.052 | 0.0995 | 0.1951 0.1115 | 0.1592 | 0.0754 0.4209 | 0.0215 | 0.2895
ATTED:At1g01470.html HeptamerElement:AAACCCT | HeptamerElement:AAAACCC | HeptamerElement:GACACGT | HeptamerElement:AGACACG | HeptamerElement:AAATATC AAACCCT | AAAACCC | GACACGT | AGACACG | AAATATC 115 | 116 | 152 | 153 | 233 0.08 | 0.07 | 0.08 | 0.07 | 0.07 PPDB 2.1001 | 2.0476 | 1.3035 1.4194 | 1.4057 | 1.2896 0.987 | 1.1955 | 1.4658
ATTED:At1g01480.html HeptamerElement:TATATAA | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:CTATATA TATATAA | ATATAAA | TATATAA | CTATATA 27 | 331 | 332 | 333 0.10 | 0.08 | 0.10 | 0.13 PPDB -0.1635 | -0.0499 | -0.2863 -0.4049 | -0.479 | -0.51 -0.6708 | -0.4921 | -0.3771
ATTED:At1g01490.html HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:CTCTCTT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | CTCTCTT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT | TCTCTCT 7 | 8 | 75 | 93 | 95 | 97 | 99 | 152 | 153 | 155 | 157 | 159 | 161 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB -0.0597 | -0.2369 | 0.131 0.3119 | 0.1596 | -0.0822 0.561 | 0.1959 | 0.4067
ATTED:At1g01500.html HeptamerElement:AAACCCT | HeptamerElement:AATATCT | HeptamerElement:AAATATC | HeptamerElement:ACACGTG AAACCCT | AATATCT | AAATATC | ACACGTG 5 | 13 | 14 | 136 0.14 | 0.11 | 0.11 | 0.08 PPDB -0.2854 | -0.365 | -0.1439 -0.1316 | -0.0915 | -0.1018 -0.1418 | 0.0099 | -0.0979
ATTED:At1g01510.html HeptamerElement:TCACTCC | HeptamerElement:CCCTAAA | HeptamerElement:ACCCTAA | HeptamerElement:AACCCTA | HeptamerElement:TTGGGCC TCACTCC | CCCTAAA | ACCCTAA | AACCCTA | TTGGGCC 12 | 44 | 45 | 46 | 111 0.07 | 0.08 | 0.10 | 0.13 | 0.09 PPDB -0.228 | -0.2201 | -0.1073 -0.028 | -0.1137 | -0.2187 -0.2649 | 0.0026 | -0.1518
ATTED:At1g01520.html HeptamerElement:CACGTGT | HeptamerElement:ACACGTG CACGTGT | ACACGTG 64 | 65 0.08 | 0.08 TAIR9 -0.1413 | -0.1845 | -0.2408 0.0062 | 0.2138 | 0.446 0.4448 | 0.0192 | 0.0839
ATTED:At1g01540.html HeptamerElement:CATGCAA | HeptamerElement:CCACACA CATGCAA | CCACACA 38 | 43 0.08 | 0.07 PPDB 0.4877 | 0.4948 | 0.4758 0.2077 | 0.315 | 0.3813 0.3889 | 0.3186 | 0.1262
ATTED:At1g01550.html HeptamerElement:CGTCACA CGTCACA 107 0.06 PPDB 0.2122 | 0.0835 | -0.0691 0.0163 | -0.0698 | 0.0105 0.0365 | -0.0322 | 0.0982
ATTED:At1g01560.html - - - - PPDB 2.9691 | 3.2905 | 1.5403 0.2868 | 0.6114 | 0.3506 0.9997 | 0.1536 | 0.8886
ATTED:At1g01600.html HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA TATAAAT | CTATAAA | CCTATAA | TATAAAT | CTATAAA | CCTATAA 27 | 28 | 29 | 524 | 525 | 526 0.10 | 0.09 | 0.07 | 0.10 | 0.09 | 0.07 PPDB -0.3806 | -0.3812 | -0.4873 -0.1944 | -0.3398 | -0.1287 -0.5105 | 0.1453 | -0.1755
ATTED:At1g01610.html HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:CTCTCTT | HeptamerElement:AAAACCC | HeptamerElement:TAAAACC CTCTCTT | CTCTCTT | CTCTCTT | AAAACCC | TAAAACC 24 | 34 | 52 | 71 | 72 0.06 | 0.06 | 0.06 | 0.09 | 0.06 PPDB -0.4263 | -0.2923 | -0.2818 -0.1588 | -0.1848 | -0.151 -0.3834 | -0.0238 | -0.1719
ATTED:At1g01620.html HeptamerElement:TTATCCA TTATCCA 135 0.09 PPDB -0.1601 | -0.1419 | 0.2145 0.2753 | -0.0825 | -0.1582 -0.4297 | 0.1887 | 0.0066
ATTED:At1g01630.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT 83 | 84 | 85 | 86 | 103 0.07 | 0.07 | 0.10 | 0.08 | 0.07 PPDB 0.0601 | 0.2583 | 0.1029 0.2006 | 0.3003 | 0.2503 0.2025 | 0.2683 | 0.3538
ATTED:At1g01650.html - - - - PPDB 0.0699 | -0.0016 | -0.4516 -0.1378 | -0.2095 | -0.0972 -0.2446 | -0.1089 | -0.0495
ATTED:At1g01670.html HeptamerElement:ACGTGTC ACGTGTC 64 0.10 PPDB 0.0843 | -0.1824 | 0.3092 0.0067 | 0.0827 | 0.0107 0.3282 | 0.2088 | -0.0176
ATTED:At1g01710.html HeptamerElement:ACACGTG ACACGTG 93 0.09 PPDB -0.1842 | -0.0179 | -0.142 -0.0253 | -0.0752 | -0.0693 -0.0776 | -0.1965 | -0.0176
ATTED:At1g01720.html HeptamerElement:TATATAA | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:ACACGTG | HeptamerElement:GACACGT | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG | HeptamerElement:CGTGTCC | HeptamerElement:ACGTGTC TATATAA | CGTGTCC | ACGTGTC | CACGTGT | ACACGTG | GACACGT | TCTAGAA | TTCTAGA | CACGTGT | CCACGTG | CGTGTCC | ACGTGTC 27 | 46 | 47 | 48 | 49 | 50 | 80 | 81 | 89 | 90 | 113 | 114 0.11 | 0.06 | 0.09 | 0.11 | 0.09 | 0.08 | 0.14 | 0.10 | 0.11 | 0.07 | 0.06 | 0.09 PPDB -1.0059 | -1.1655 | -1.8292 -1.2453 | -1.4962 | -1.5718 -0.9439 | -1.0536 | -1.1091
ATTED:At1g01730.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:ATGGGCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | ATGGGCC 96 | 97 | 98 | 99 | 110 0.07 | 0.08 | 0.11 | 0.08 | 0.08 PPDB -0.4004 | -0.4174 | -0.1143 -0.0343 | -0.061 | -0.2101 0.1193 | -0.0696 | 0.0535
ATTED:At1g01740.html - - - - TAIR9 -0.0972 | 0.0308 | 0.2813 0.2228 | 0.111 | 0.08 0.3549 | 0.0372 | 0.1182
ATTED:At1g01770.html HeptamerElement:ATATATA | HeptamerElement:TATATAT ATATATA | TATATAT 57 | 58 0.09 | 0.09 PPDB -0.1846 | 0.0756 | 0.007 0.1319 | -0.0924 | -0.1694 0.0227 | 0.0836 | -0.0921
ATTED:At1g01790.html - - - - PPDB 0.8145 | 0.8607 | 0.7829 0.9763 | 0.8555 | 1.2314 1.007 | 0.8906 | 0.8059
ATTED:At1g01820.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 33 | 34 0.09 | 0.09 PPDB -0.0072 | 0.0095 | 0.009 -0.015 | -0.0817 | -0.0643 -0.0131 | 0.1138 | 0.0942
ATTED:At1g01840.html HeptamerElement:GCCCAAA | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC GCCCAAA | GGCCCAA | AGGCCCA | AAGGCCC | GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC 51 | 52 | 53 | 54 | 71 | 72 | 73 | 74 0.06 | 0.08 | 0.10 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB -0.4186 | -0.5672 | -0.0309 -0.1583 | -0.2239 | -0.002 -0.1139 | -0.0405 | -0.171
ATTED:At1g01860.html - - - - PPDB 0.3515 | 0.1413 | 0.3394 0.4576 | 0.2383 | 0.5097 0.159 | 0.2183 | 0.3445
ATTED:At1g01900.html HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAT | ATATATA | TATATAT | ATATATA | TATATAT | ATATATA 46 | 47 | 48 | 49 | 113 | 236 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 PPDB 0.2122 | 0.0498 | 0.3576 0.5965 | 0.1534 | 0.3934 -0.0321 | 0.5983 | 0.3961
ATTED:At1g01920.html HeptamerElement:TTAAACC | HeptamerElement:AAAACCC | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:GCCCATA | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:AAAACCC TTAAACC | AAAACCC | AAGCCCA | AAAGCCC | GCCCATA | AGCCCAT | AAGCCCA | AAAACCC 4 | 23 | 73 | 74 | 83 | 84 | 85 | 405 0.07 | 0.09 | 0.09 | 0.06 | 0.07 | 0.08 | 0.09 | 0.09 PPDB -0.0393 | -0.2857 | -0.3482 -0.2824 | -0.2389 | -0.4701 -0.298 | -0.5051 | -0.3563
ATTED:At1g01930.html HeptamerElement:ATGGGCC | HeptamerElement:TATGGGC | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:GCCGCCT ATGGGCC | TATGGGC | GGGCCTT | TGGGCCT | TTGGGCC | ATTGGGC | TATTGGG | GCCGCCT 84 | 85 | 93 | 94 | 95 | 96 | 97 | 109 0.08 | 0.06 | 0.06 | 0.10 | 0.09 | 0.09 | 0.06 | 0.07 PPDB -0.2943 | -0.3047 | -0.3125 -0.2415 | -0.1959 | -0.4939 -0.2007 | -0.2396 | -0.2757
ATTED:At1g01940.html HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT GCCCAAT | GGCCCAA | AGGCCCA | AAGGCCC | GCCCATA | GGCCCAT 111 | 112 | 113 | 114 | 122 | 123 0.07 | 0.08 | 0.11 | 0.08 | 0.07 | 0.10 PPDB -0.3385 | -0.1862 | -0.1065 -0.0795 | -0.0406 | -0.1217 -0.4288 | -0.0353 | -0.0843
ATTED:At1g01950.html HeptamerElement:AAAATAT | HeptamerElement:CTCTCTT AAAATAT | CTCTCTT 20 | 169 0.07 | 0.06 PPDB 0.1483 | 0.1672 | 0.038 -0.2637 | -0.4047 | -0.3224 -0.3237 | -0.457 | -0.3339
ATTED:At1g01970.html HeptamerElement:TCTCTAG | HeptamerElement:GCCCATA | HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC TCTCTAG | GCCCATA | GGCCCAT | AGGCCCA | AAGGCCC | GCCCAAT | GGCCCAA | AGGCCCA | ATGGGCC | AATGGGC 104 | 120 | 121 | 122 | 123 | 138 | 139 | 140 | 160 | 161 0.06 | 0.07 | 0.10 | 0.10 | 0.08 | 0.07 | 0.07 | 0.10 | 0.07 | 0.07 PPDB 0.3707 | 0.3475 | 0.3668 0.4678 | 0.5013 | 0.807 0.4546 | 0.6742 | 0.5175
ATTED:At1g01990.html HeptamerElement:CTCTCTT | HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT CTCTCTT | CCCATTA | GCCCATT | AGCCCAT | TGGGCTT | TGGGCTT | ATGGGCT 37 | 61 | 62 | 63 | 74 | 123 | 124 0.06 | 0.07 | 0.10 | 0.09 | 0.06 | 0.06 | 0.06 PPDB -0.0223 | -0.1555 | 0.0175 -0.2038 | -0.0873 | -0.3245 -0.2218 | -0.0855 | -0.0568
ATTED:At1g02020.html HeptamerElement:TGCCGAC TGCCGAC 118 0.08 PPDB -0.0601 | 0.0776 | -0.0281 -0.0354 | 0.043 | 0.0167 0.3235 | 0.1912 | 0.1887
ATTED:At1g02050.html - - - - TAIR9 -0.413 | -0.6301 | -0.2167 -0.5777 | -0.6932 | -0.239 -0.2997 | 0.5217 | -0.7135
ATTED:At1g02060.html HeptamerElement:AGGGTTT | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:TCTAGAA | HeptamerElement:GGGCCTA | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:AGGGTTT AGGGTTT | TGGGCCT | TTGGGCC | ATTGGGC | GCCCATT | AGCCCAT | TCTAGAA | GGGCCTA | TGGGCCT | TTGGGCC | ATTGGGC | AGGGTTT 12 | 44 | 45 | 46 | 56 | 57 | 72 | 90 | 91 | 92 | 93 | 269 0.10 | 0.09 | 0.08 | 0.08 | 0.10 | 0.08 | 0.11 | 0.06 | 0.09 | 0.08 | 0.08 | 0.10 PPDB -0.1467 | -0.1569 | -0.0296 0.0621 | 0.0616 | -0.0767 -0.2926 | -0.0073 | -0.0626
ATTED:At1g02070.html HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA ATAAATA | TATAAAT | ATATAAA | TATATAA | ATATATA | TATATAT | ATATATA | ATATATA | TATATAT | ATATATA 6 | 7 | 8 | 9 | 10 | 11 | 12 | 28 | 29 | 30 0.09 | 0.10 | 0.09 | 0.11 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 TAIR9 -0.4665 | -0.3871 | 0.2038 0.2923 | -0.2711 | -0.3835 -0.193 | 0.0091 | 0.0296
ATTED:At1g02080.html HeptamerElement:AACCCTA AACCCTA 436 0.10 PPDB -0.4966 | -0.3287 | -0.3131 0.0253 | -0.2144 | -0.2511 -0.0078 | -0.0832 | -0.1166
ATTED:At1g02090.html HeptamerElement:ATATAAA | HeptamerElement:GTCGGTC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:CGCGGTT | HeptamerElement:ACGCGGT | HeptamerElement:AGCCCAA ATATAAA | GTCGGTC | TCTAGAA | TTCTAGA | GCCCAAT | AGCCCAA | CGCGGTT | ACGCGGT | AGCCCAA 26 | 50 | 64 | 65 | 84 | 85 | 139 | 140 | 492 0.09 | 0.06 | 0.12 | 0.09 | 0.07 | 0.07 | 0.07 | 0.09 | 0.07 PPDB -0.5623 | -0.4471 | -0.4261 -0.5121 | -0.3738 | -0.1203 -0.5612 | -0.2141 | -0.298
ATTED:At1g02100.html HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TCTAGAA | HeptamerElement:TTCTAGA | HeptamerElement:CTTCTAG TTGGGCT | ATTGGGC | TCTAGAA | TTCTAGA | CTTCTAG 138 | 139 | 158 | 159 | 160 0.07 | 0.08 | 0.10 | 0.10 | 0.08 PPDB -0.0154 | -0.0132 | -0.0069 0.0425 | 0.0454 | 0.0049 0.191 | 0.077 | 0.0944
ATTED:At1g02120.html HeptamerElement:GGCCCAA GGCCCAA 176 0.07 TAIR9 0.2938 | 0.1158 | 0.1056 0.442 | 0.5414 | 0.3649 0.5908 | 0.1513 | 0.3726
ATTED:At1g02130.html HeptamerElement:GGCCCAA | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC | HeptamerElement:TGGGCCT | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC GGCCCAA | AGGCCCA | AAGGCCC | TGGGCCT | TTGGGCC | ATTGGGC | TGGGCCT | TTGGGCC | ATTGGGC 52 | 53 | 54 | 79 | 80 | 81 | 190 | 191 | 192 0.07 | 0.10 | 0.07 | 0.09 | 0.08 | 0.08 | 0.09 | 0.08 | 0.08 PPDB -0.2833 | -0.4048 | -0.348 -0.0841 | -0.218 | -0.2194 -0.3946 | -0.2002 | -0.1942
ATTED:At1g02140.html HeptamerElement:CCCATTA | HeptamerElement:GCCCATT | HeptamerElement:AGCCCAT | HeptamerElement:AAGCCCA | HeptamerElement:GCCCAAT | HeptamerElement:GGCCCAA | HeptamerElement:GGGCCTT | HeptamerElement:TGGGCCT | HeptamerElement:GTCGGCA CCCATTA | GCCCATT | AGCCCAT | AAGCCCA | GCCCAAT | GGCCCAA | GGGCCTT | TGGGCCT | GTCGGCA 64 | 65 | 66 | 67 | 78 | 79 | 112 | 113 | 198 0.06 | 0.09 | 0.07 | 0.08 | 0.07 | 0.08 | 0.07 | 0.10 | 0.06 PPDB -0.3538 | -0.3797 | -0.3061 -0.154 | -0.1331 | -0.2066 -0.306 | -0.0782 | -0.1752
ATTED:At1g02160.html HeptamerElement:GGCCCAT | HeptamerElement:AGGCCCA | HeptamerElement:AAGGCCC | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:AAGGCCC | HeptamerElement:TTGGGCC | HeptamerElement:AGGCCCA GGCCCAT | AGGCCCA | AAGGCCC | TATATAA | ATATATA | AAGGCCC | TTGGGCC | AGGCCCA 8 | 9 | 10 | 31 | 32 | 47 | 64 | 538 0.09 | 0.10 | 0.08 | 0.10 | 0.08 | 0.08 | 0.09 | 0.10 PPDB -0.287 | -0.1452 | -0.0927 -0.1348 | -0.1716 | -0.4742 -0.1005 | -0.2403 | -0.1313
ATTED:At1g02180.html HeptamerElement:GCCCAAT | HeptamerElement:AGCCCAA | HeptamerElement:AAGCCCA | HeptamerElement:AAAGCCC | HeptamerElement:AGCCCAA GCCCAAT | AGCCCAA | AAGCCCA | AAAGCCC | AGCCCAA 69 | 70 | 71 | 72 | 88 0.07 | 0.07 | 0.09 | 0.06 | 0.07 PPDB -0.1545 | -0.2769 | -0.0454 -0.1111 | -0.3039 | -0.0509 -0.4286 | -0.2958 | -0.2188
ATTED:At1g02190.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:CTCTATA TATATAA | CTATATA | TCTATAT | CTCTATA 28 | 29 | 30 | 31 0.11 | 0.13 | 0.10 | 0.10 PPDB -1.5916 | -1.4677 | -1.1792 -1.3774 | -1.261 | -1.531 -1.2153 | -0.8322 | -1.1716
ATTED:At1g02205.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TATAAAC | HeptamerElement:ATATAAA | HeptamerElement:ATATCTA TATATAA | CTATATA | TATAAAC | ATATAAA | ATATCTA 34 | 35 | 46 | 47 | 70 0.11 | 0.13 | 0.07 | 0.08 | 0.06 PPDB -0.2559 | -0.0287 | 0.3675 0.6439 | -0.3529 | 0.2257 0.1814 | 0.8846 | 0.3306
ATTED:At1g02260.html HeptamerElement:CGTGGCA | HeptamerElement:ACGTGGC CGTGGCA | ACGTGGC 46 | 47 0.08 | 0.09 PPDB -0.0481 | -0.0988 | 0.1489 -0.007 | 0.1134 | 0.0189 0.0733 | 5e-04 | 0.0064
ATTED:At1g02270.html HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 126 | 127 0.09 | 0.09 PPDB 0.9461 | 0.872 | 0.2551 0.2892 | 0.348 | 0.0927 0.3228 | 0.2791 | 0.3956
ATTED:At1g02280.html HeptamerElement:GATAAGG GATAAGG 15 0.07 PPDB 0.388 | 0.4295 | 0.711 0.6252 | 0.5756 | 0.5176 0.2576 | 0.545 | 0.3054
ATTED:At1g02310.html HeptamerElement:CCACACA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ACGCGTT | HeptamerElement:TATATAA | HeptamerElement:ATATATA CCACACA | TATATAA | ATATATA | TATATAT | ACGCGTT | TATATAA | ATATATA 25 | 34 | 35 | 36 | 131 | 541 | 542 0.06 | 0.11 | 0.10 | 0.10 | 0.10 | 0.11 | 0.10 PPDB -0.664 | -0.5327 | -0.8704 -0.8264 | -0.8885 | -0.6232 -0.6645 | -0.5801 | -0.7705
ATTED:At1g02330.html HeptamerElement:GGCCCAT | HeptamerElement:TGGGCTT | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:ATGGGCT | HeptamerElement:AATGGGC | HeptamerElement:TGGGCCT GGCCCAT | TGGGCTT | ATGGGCT | AATGGGC | ATGGGCT | AATGGGC | TGGGCCT 90 | 105 | 106 | 107 | 179 | 180 | 199 0.08 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 | 0.07 PPDB -0.5803 | -0.4327 | -0.459 -0.3013 | -0.2486 | -0.6389 -0.3332 | -0.0584 | -0.1202
ATTED:At1g02340.html HeptamerElement:CCACACA CCACACA 114 0.06 PPDB -0.6819 | -0.9572 | -0.6501 0.6295 | -0.354 | 0.3744 0.358 | -0.0242 | 0.1024
ATTED:At1g02360.html HeptamerElement:TATATAA | HeptamerElement:CTATATA | HeptamerElement:TCTATAT | HeptamerElement:ACGCGTT | HeptamerElement:AACGCGT | HeptamerElement:TCTATAT TATATAA | CTATATA | TCTATAT | ACGCGTT | AACGCGT | TCTATAT 30 | 31 | 32 | 52 | 53 | 416 0.11 | 0.13 | 0.10 | 0.10 | 0.07 | 0.10 PPDB -0.0536 | 0.24 | -0.1936 -0.2718 | -0.129 | -0.2645 -0.0429 | -0.3627 | 0.1779
ATTED:At1g02370.html HeptamerElement:AACCCTA | HeptamerElement:AAACCCT | HeptamerElement:TAAACCC | HeptamerElement:TTAAACC AACCCTA | AAACCCT | TAAACCC | TTAAACC 31 | 32 | 33 | 34 0.11 | 0.12 | 0.08 | 0.06 PPDB -0.4432 | -0.4939 | -0.5479 -0.2331 | -0.1302 | -0.1502 -0.2203 | 0.0538 | -0.1777
ATTED:At1g02390.html HeptamerElement:TATATAA | HeptamerElement:AAATATC | HeptamerElement:CATGCAA | HeptamerElement:ACGCGTA | HeptamerElement:GACGCGT | HeptamerElement:AAATATC TATATAA | AAATATC | CATGCAA | ACGCGTA | GACGCGT | AAATATC 28 | 71 | 122 | 172 | 173 | 180 0.11 | 0.07 | 0.07 | 0.10 | 0.06 | 0.07 PPDB 0.5248 | -0.1079 | -0.1798 -0.4115 | -0.5907 | -0.6431 0.0277 | -0.2278 | -0.377
ATTED:At1g02400.html HeptamerElement:AATAATT | HeptamerElement:AATAATT AATAATT | AATAATT 236 | 332 0.06 | 0.06 PPDB 1.5171 | 1.2934 | -0.5274 -1.2889 | -1.2479 | -0.5986 -1.1365 | -1.1052 | -0.8824
ATTED:At1g02410.html HeptamerElement:TTGACTT | HeptamerElement:TTGACTT | HeptamerElement:TTTGACT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT | HeptamerElement:TGGGCTT | HeptamerElement:AATAATT | HeptamerElement:TGGGCTT TTGACTT | TTGACTT | TTTGACT | AATAATT | TGGGCTT | TGGGCTT | AATAATT | TGGGCTT 40 | 48 | 49 | 113 | 149 | 173 | 307 | 412 0.08 | 0.08 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 | 0.06 PPDB -0.2139 | -0.0621 | -0.0656 0.0148 | -0.1729 | 0.0233 -0.0264 | -0.1342 | -0.0742
ATTED:At1g02450.html HeptamerElement:AAATATC | HeptamerElement:AAATATC AAATATC | AAATATC 165 | 187 0.07 | 0.07 PPDB 0.2621 | 0.8947 | 0.3309 0.1887 | 0.7385 | 0.8264 1.4551 | 0.3823 | 0.9539
ATTED:At1g02460.html HeptamerElement:ATATAAA | HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:AAGCCCA | HeptamerElement:GATATTT ATATAAA | TATATAA | ATATATA | TATATAT | AAGCCCA | GATATTT 47 | 48 | 49 | 50 | 68 | 126 0.08 | 0.10 | 0.09 | 0.10 | 0.09 | 0.09 TAIR9 0.0665 | -0.1553 | 0.0996 0.0143 | -0.1364 | -0.0484 -0.0529 | -0.0945 | -0.2397
ATTED:At1g02470.html HeptamerElement:AAAGTCA AAAGTCA 164 0.07 TAIR9 -0.6876 | -0.5336 | -0.5878 -0.0522 | -0.2933 | 0.0572 -0.1661 | -0.2891 | 0.2314
ATTED:At1g02475.html - - - - PPDB 0.9995 | 0.9791 | 0.8625 1.081 | 1.0206 | 1.1944 0.9652 | 1.1862 | 1.2905
* Row count is limited to 100.