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Developmental Genomic (AtGenExpress + PPDB promoter motif) mean
Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). We took the mean of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally (PPDB). Gene Loci without expression data or motif data were removed from this database.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_PPDB_Flowering_mean This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds_mean
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf_mean
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root_mean
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling_mean
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem_mean
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant_mean
This collection of Gene Expression Properties are associated with whole plant body parts.


License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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