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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Derived_cells_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:3T3-L1 label:C2C12 label:C3H_10T1_2 label:RAW_264_7 label:mIMCD-3 label:min6 label:neuro2a label:nih_3T3
#object_type_xsd string string string float string float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
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Gene:11972 1415671_at 5484.97181 1655.72931 4058.60262 2586.6029 1090.84706 6420.67007 4004.85889 1465.9078
Gene:57437 1415672_at 3997.51656 2834.36666 3468.76159 4695.59475 2713.64563 2496.749 3966.4867 3816.72904
Gene:100678 1415673_at 2074.66299 1629.22615 1319.75429 424.85912 1106.14391 1458.23748 3330.38204 2126.60374
Gene:60409 1415674_a_at 981.83546 1446.30414 1121.10947 1083.65897 861.81362 640.88389 1768.53173 1029.8512
Gene:13481 1415675_at 1048.78834 606.32658 696.37858 517.62143 624.57516 588.37736 378.59566 575.41237
Gene:19173 1415676_a_at 2970.83611 4174.37139 3996.04859 3867.33541 3086.83382 2681.57089 4299.46654 3845.48309
Gene:52585 1415677_at 481.43691 628.72919 963.54217 655.70524 389.30721 458.52348 511.10698 253.47267
Gene:19042 1415678_at 908.08116 1407.10768 1003.25209 725.4341 933.8012 779.82528 1430.19942 988.57152
Gene:66340 1415679_at 2432.74798 2311.61958 2752.63882 3919.22859 2391.58486 5150.43663 4294.97703 2764.25161
Gene:17222 1415680_at 1483.01641 1448.61246 1018.93751 1086.34442 982.98118 451.32387 404.10534 1576.66315
Gene:94067 1415681_at 1085.28484 967.95704 1095.1506 1525.9751 1821.61241 624.50342 855.68328 1061.87791
Gene:65246 1415682_at 245.88506 455.18731 359.73659 306.51444 359.02307 339.56276 474.40505 227.90773
Gene:18107 1415683_at 2716.82723 4684.01938 3464.35921 3445.25404 3921.93584 1769.30043 4646.35049 3623.92285
Gene:11793 1415684_at 243.63711 280.43735 263.31708 296.09727 311.51366 375.59639 453.4822 342.43734
Gene:76784 1415685_at 237.30519 263.84899 268.84093 630.94789 557.47843 613.35826 322.08386 358.23499
Gene:68365 1415686_at 1160.81768 849.91277 838.10741 958.75161 836.59353 1066.04114 746.54139 925.42424
Gene:19156 1415687_a_at 15385.20998 9696.99135 12762.31096 12223.53826 6068.32254 13385.70328 11091.81472 8734.84826
Gene:67128 1415688_at 1497.75125 1098.17413 1361.71154 844.18892 2242.33686 729.31916 1374.80631 1272.03317
Gene:72739 1415689_s_at 383.8146 245.91616 528.99942 275.33993 215.27131 353.57882 176.55092 289.21459
Gene:94064 1415690_at 2682.9792 3412.65509 4784.13179 3475.30744 3361.62813 2395.83773 3001.53104 3013.2819
Gene:13383 1415691_at 1487.58298 967.98318 924.13677 291.68316 1601.62767 620.14198 464.36367 671.70361
Gene:12330 1415692_s_at 8725.36258 9344.56145 11031.12653 10774.66473 11101.95458 8963.0267 12264.49982 10945.47308
Gene:67819 1415693_at 459.11062 478.03972 600.89477 561.52098 502.08083 506.83345 396.3633 298.10678
Gene:22375 1415694_at 22.34672 63.75437 30.86997 235.73027 260.76421 561.55742 58.20712 307.41513
Gene:26440 1415695_at 5237.25636 6064.79953 5642.89045 11006.84367 8375.05801 6437.4967 7120.9316 8322.91412
Gene:20224 1415696_at 1367.79859 2066.25987 2390.15837 699.67787 1133.49693 2953.18715 1162.50638 1761.82682
Gene:23881 1415697_at 759.01807 817.35905 539.17003 1383.71447 1280.15703 955.86139 853.16054 648.87527
Gene:105348 1415698_at 539.13131 200.28181 291.71922 336.96608 1050.98246 193.03618 307.29419 359.1158
Gene:209318 1415699_a_at 1664.6529 2256.60393 2228.35146 1960.2049 2896.65955 1852.56855 2444.15763 2864.01492
Gene:67437 1415700_a_at 5846.98228 6773.10177 4830.3267 3536.40601 8367.59823 5716.40316 4774.35912 6306.6927
Gene:65019 1415701_x_at 39770.30078 43488.41264 46412.29408 41682.86968 44828.44487 26724.37306 48227.78654 44787.89813
Gene:13016 1415702_a_at 2610.49078 2231.14768 1655.7974 1746.72781 2491.90394 3849.93055 2554.98188 1489.50212
Gene:59026 1415703_at 1601.35468 1173.55215 1094.60799 1277.63437 965.87657 1558.17405 2170.70397 1903.79208
Gene:321022 1415704_a_at 3297.91578 3542.99536 1853.06553 2589.53261 4535.39741 2301.72211 2723.87835 3611.80081
Gene:66818 1415705_at 550.5986 490.0955 630.25246 219.17457 631.76735 438.33832 93.93653 636.44567
Gene:12847 1415706_at 4208.29315 3003.3565 6065.29698 2855.47823 2681.97484 7849.06284 4134.03309 2706.50279
Gene:99152 1415707_at 1205.60407 1057.2992 1481.81902 1026.80336 797.56158 746.27931 1029.68915 1416.77074
Gene:544752 1415708_at 1861.75996 1111.73487 2132.86192 1192.08318 1949.9144 3311.35221 640.24347 2043.8201
Gene:107338 1415709_s_at 356.12406 219.76069 280.82592 191.35693 214.95462 541.88568 131.03627 343.3494
Gene:231430 1415710_at 1397.66878 964.07207 730.07532 1614.71339 907.23693 517.70872 359.63385 1244.87603
Gene:211673 1415711_at 586.2597 570.8835 502.26719 803.10768 1352.65292 1473.71371 887.93442 925.62728
Gene:360216 1415712_at 139.60681 96.37922 133.64654 151.78928 178.21622 809.95052 92.40238 224.628
Gene:27225 1415713_a_at 738.97304 492.43932 564.85765 1095.63218 924.38017 660.11132 541.36464 807.38518
Gene:66618 1415714_a_at 1496.50765 1235.34585 1246.88519 1289.64009 2071.25092 993.24561 1652.6114 1095.19105
Gene:68366 1415715_at 265.73208 292.84202 236.24329 116.00848 401.71361 441.39578 1434.84851 91.68919
Gene:100043813 1415716_a_at 28798.14212 22542.27318 27083.37363 35935.00614 39785.87939 21349.46198 27720.80202 34300.47576
Gene:57294 1415716_a_at 28798.14212 22542.27318 27083.37363 35935.00614 39785.87939 21349.46198 27720.80202 34300.47576
Gene:66743 1415717_at 127.73999 201.12288 117.11563 370.98817 241.0462 219.99219 315.64476 276.73666
Gene:50724 1415718_at 534.67264 630.23905 586.00511 370.03028 547.24136 335.23824 1682.72182 679.37852
Gene:74252 1415719_s_at 299.57363 280.11054 382.80514 285.72571 642.4268 457.54099 456.9712 289.22005
Gene:66591 1415720_s_at 150.75801 267.13457 284.36533 185.46653 185.41419 89.26729 118.15326 141.33823
Gene:74763 1415721_a_at 250.29937 184.36022 305.93887 326.44156 306.04854 424.38793 138.03553 320.30685
Gene:66201 1415722_a_at 902.78508 1295.2738 1210.3997 963.95017 1035.97502 841.49465 1502.21926 1216.60021
Gene:217869 1415723_at 1169.57831 1882.34563 1541.51212 1954.87403 2782.04062 3931.1397 1319.30932 2287.45565
Gene:12540 1415724_a_at 3371.93371 6247.46927 4897.14981 6821.63834 3509.18779 3643.27414 7728.90648 3655.59569
Gene:106298 1415725_at 517.46284 676.27918 394.89134 481.59312 836.67286 376.9236 401.66262 721.05516
Gene:81702 1415726_at 1314.04841 785.53208 677.68706 806.97157 1190.02698 897.06928 986.46069 1178.11455
Gene:246703 1415727_at 2404.52119 1212.35795 2075.12919 1965.43822 2791.82891 3285.42167 1314.7696 1908.34851
Gene:54196 1415728_at 202.77728 307.14508 241.34378 305.8509 264.79678 182.34179 332.56766 293.57818
Gene:18607 1415729_at 688.9892 565.33422 364.71656 594.93003 464.82179 1053.26981 465.76046 608.1087
Gene:269061 1415730_at 746.26554 716.36457 672.84344 587.23091 1177.82694 1008.71225 365.15097 751.73029
Gene:52477 1415731_at 106.78412 62.85736 148.82305 122.60225 82.97566 167.25416 166.82305 69.73093
Gene:193742 1415732_at 219.20141 188.40615 211.20975 200.10439 125.20328 477.27413 203.70032 156.85174
Gene:68512 1415733_a_at 1438.64678 1549.53903 1842.51976 2838.61859 1767.777 727.19293 1585.16249 2400.85513
Gene:19349 1415734_at 5676.63392 3853.28549 3372.81697 3498.17275 2547.10492 5476.94566 2993.67159 3097.64472
Gene:13194 1415735_at 4858.53596 3417.69747 3420.51456 1962.43328 4058.64375 1653.14665 1586.51102 3703.44513
Gene:56612 1415736_at 5909.98164 5433.91005 8658.05192 5442.30367 4304.64991 4849.93196 8851.25333 4713.85637
Gene:54391 1415737_at 604.11784 525.31475 669.3917 394.26601 598.36704 1108.51485 265.49106 638.27386
Gene:66073 1415738_at 939.24121 1159.4407 1818.8494 1216.55217 944.45702 1914.33171 641.6641 1275.75283
Gene:68035 1415739_at 847.01817 858.4568 930.68254 842.74901 721.21753 1155.03738 951.99671 1098.5839
Gene:19184 1415740_at 2331.96794 3396.57103 2919.54184 2458.68016 3848.69217 2470.51332 2897.1843 3242.59882
Gene:21982 1415741_at 3836.18085 2403.79418 2357.74518 2672.45202 3666.809 1956.86889 2151.94094 3235.05143
Gene:11993 1415742_at 878.47577 568.19621 428.95288 1209.57956 867.59704 374.45119 622.84797 776.45537
Gene:15184 1415743_at 70.64772 120.39412 116.2162 210.67424 20.29599 106.64768 234.39493 131.18772
Gene:14976 1415744_at 1513.20041 1389.61353 1396.08142 1362.00759 2328.7285 2389.16858 2298.75932 2183.20945
Gene:13185 1415745_a_at 1870.02598 815.15645 1619.21498 719.73559 796.04201 878.56623 7.62168 847.57578
Gene:71722 1415746_at 248.73155 137.23643 181.16496 375.25552 86.47848 235.78926 151.03234 345.78451
Gene:66878 1415747_s_at 1076.12628 1613.59636 1596.14366 1275.20722 860.09324 1133.4241 882.11827 608.32627
Gene:59288 1415748_a_at 842.62631 695.97405 815.23755 817.86757 398.16729 646.91006 701.96465 520.47813
Gene:54170 1415749_a_at 3825.4819 2589.87531 2733.3314 2926.52233 968.152 2973.89464 881.23852 3343.07917
Gene:213773 1415750_at 248.74252 367.79087 213.81346 416.21032 559.34373 171.23889 229.05565 497.78475
Gene:15441 1415751_at 1332.28951 1591.15645 1344.83803 1839.22545 1129.66811 2451.21848 1488.69921 1333.28275
Gene:407819 1415752_at 1408.24268 1638.77111 2336.33966 1296.41568 2226.78814 3330.55367 1549.51797 797.3035
Gene:216169 1415753_at 1019.29319 1453.81062 1797.67408 1507.15198 1579.53732 1070.87014 1084.03797 1594.59819
Gene:69833 1415754_at 1478.78841 3007.30367 2488.33297 2106.7941 3425.00471 1873.35803 2979.81949 2089.07352
Gene:66589 1415755_a_at 1392.09531 1361.34414 1035.96927 1241.42493 1390.86014 1237.88757 1247.52344 1729.89568
Gene:20615 1415756_a_at 825.58735 515.69453 708.52639 845.92653 539.72701 371.33193 304.81247 665.021
Gene:107338 1415757_at 424.80827 231.09844 350.10879 237.55911 299.00033 930.18563 215.17394 363.84901
* Row count is limited to 100.