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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Digestive_system_organ_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:intestine_large label:intestine_small label:stomach
#object_type_xsd string string string float string float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 1838.25365 2715.66166 1628.50057
Gene:11972 1415671_at 2804.11304 2199.76635 3141.27481
Gene:57437 1415672_at 2942.02867 2543.9405 4480.04986
Gene:100678 1415673_at 138.24366 192.45869 187.3867
Gene:60409 1415674_a_at 762.65586 705.75834 710.12571
Gene:13481 1415675_at 437.21817 341.69508 322.04221
Gene:19173 1415676_a_at 2255.47797 2023.61315 3153.98797
Gene:52585 1415677_at 573.97059 1519.50802 1104.40293
Gene:19042 1415678_at 1637.4423 1945.0452 1704.90552
Gene:66340 1415679_at 4459.63298 3991.55805 3759.63171
Gene:17222 1415680_at 477.46661 448.7216 316.87635
Gene:94067 1415681_at 1187.64876 948.02979 1139.37862
Gene:65246 1415682_at 213.39796 266.83378 247.78737
Gene:18107 1415683_at 1770.13406 2050.15195 1485.13886
Gene:11793 1415684_at 364.89924 718.34972 597.37123
Gene:76784 1415685_at 412.28502 448.11113 373.35721
Gene:68365 1415686_at 1119.7063 1289.05617 1328.80808
Gene:19156 1415687_a_at 9156.6625 7728.63535 9961.65767
Gene:67128 1415688_at 1353.55932 1039.84923 1076.69802
Gene:72739 1415689_s_at 511.80181 764.21752 608.94668
Gene:94064 1415690_at 2264.71761 2423.61528 2116.80122
Gene:13383 1415691_at 968.59407 922.2776 1214.24824
Gene:12330 1415692_s_at 8803.10412 14827.00337 9091.04631
Gene:67819 1415693_at 267.96769 485.96964 304.58626
Gene:22375 1415694_at 545.1482 450.19541 314.51592
Gene:26440 1415695_at 4562.91333 5913.387 4425.55415
Gene:20224 1415696_at 1047.8772 718.69413 840.78764
Gene:23881 1415697_at 468.95711 775.16561 533.68489
Gene:105348 1415698_at 17230.3533 5975.73042 8528.48245
Gene:209318 1415699_a_at 1019.06602 768.93692 828.05572
Gene:67437 1415700_a_at 4970.09503 5477.96295 4273.01583
Gene:65019 1415701_x_at 36524.02639 30436.82207 30049.05235
Gene:13016 1415702_a_at 3307.36914 2758.34737 2122.01096
Gene:59026 1415703_at 1361.46864 998.63849 1243.45005
Gene:321022 1415704_a_at 1819.43723 2543.29782 1935.39765
Gene:66818 1415705_at 551.79959 459.4046 490.84294
Gene:12847 1415706_at 5395.94505 6142.76184 4276.64421
Gene:99152 1415707_at 882.90774 681.80085 624.19291
Gene:544752 1415708_at 3183.44349 2525.30729 1454.94223
Gene:107338 1415709_s_at 397.45851 441.84019 313.51622
Gene:231430 1415710_at 237.54953 301.42513 315.372
Gene:211673 1415711_at 1791.49383 2141.41559 1820.90409
Gene:360216 1415712_at 342.94738 229.49718 329.5466
Gene:27225 1415713_a_at 279.49115 210.40899 288.39403
Gene:66618 1415714_a_at 503.99324 533.82066 636.53161
Gene:68366 1415715_at 236.00284 192.39889 162.62146
Gene:100043813 1415716_a_at 35191.57764 25846.89744 27086.17046
Gene:57294 1415716_a_at 35191.57764 25846.89744 27086.17046
Gene:66743 1415717_at 179.36752 235.32759 216.42196
Gene:50724 1415718_at 699.67664 1075.97659 283.05321
Gene:74252 1415719_s_at 309.69709 393.53688 296.18393
Gene:66591 1415720_s_at 212.73047 218.96713 226.90919
Gene:74763 1415721_a_at 328.33609 434.13866 344.52411
Gene:66201 1415722_a_at 593.09387 547.89367 603.41674
Gene:217869 1415723_at 2653.49858 2490.81661 1993.14324
Gene:12540 1415724_a_at 4050.45556 6210.92901 4655.83128
Gene:106298 1415725_at 118.82283 129.44794 136.36278
Gene:81702 1415726_at 850.27059 790.7333 736.66417
Gene:246703 1415727_at 1414.43729 971.16555 1729.96984
Gene:54196 1415728_at 192.01615 366.73976 276.83153
Gene:18607 1415729_at 719.40381 690.98914 593.23416
Gene:269061 1415730_at 850.92785 695.18259 391.56543
Gene:52477 1415731_at 105.59322 142.28903 69.04779
Gene:193742 1415732_at 275.16783 217.15768 265.64019
Gene:68512 1415733_a_at 1791.81841 1256.22698 1302.281
Gene:19349 1415734_at 3426.7728 3243.68918 4641.26901
Gene:13194 1415735_at 1769.33323 1655.7157 1321.19435
Gene:56612 1415736_at 2886.22359 2820.38641 2566.31354
Gene:54391 1415737_at 5823.96102 10433.21981 6244.6769
Gene:66073 1415738_at 798.85628 514.27647 675.25398
Gene:68035 1415739_at 1007.14805 1247.10001 974.8979
Gene:19184 1415740_at 1348.23573 2070.95314 2086.74702
Gene:21982 1415741_at 2023.52482 1588.49829 1634.33492
Gene:11993 1415742_at 765.31012 851.67005 750.17998
Gene:15184 1415743_at 103.08108 61.96188 116.77844
Gene:14976 1415744_at 1129.47179 1124.30522 1241.79739
Gene:13185 1415745_a_at 371.30396 355.18776 320.21564
Gene:71722 1415746_at 132.60478 161.63725 147.16523
Gene:66878 1415747_s_at 1533.39647 1578.55083 1941.66398
Gene:59288 1415748_a_at 637.39871 540.13468 761.42512
Gene:54170 1415749_a_at 1132.05902 1035.6954 1064.39329
Gene:213773 1415750_at 59.75594 68.03812 104.37187
Gene:15441 1415751_at 1609.57137 1301.22863 1642.24292
Gene:407819 1415752_at 2712.86572 2707.60518 3063.92353
Gene:216169 1415753_at 1099.1734 1741.84354 2005.87727
Gene:69833 1415754_at 1628.66854 1079.1521 1924.04733
Gene:66589 1415755_a_at 932.71335 603.21582 1437.41537
Gene:20615 1415756_a_at 360.80614 222.55867 418.5798
Gene:107338 1415757_at 645.01742 972.01667 588.09939
* Row count is limited to 100.