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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Myeloid_leukocytes_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:granulocytes_mac1+gr1+ label:macrophage_bone_marrow_0hr label:macrophage_bone_marrow_2hr_LPS label:macrophage_bone_marrow_6hr_LPS label:macrophage_bone_marrow_24h_LPS label:macrophage_peri_LPS_thio_0hrs label:macrophage_peri_LPS_thio_1hrs label:macrophage_peri_LPS_thio_7hrs label:mast_cells label:mast_cells_IgE label:mast_cells_IgE+antigen_1hr label:mast_cells_IgE+antigen_6hr label:microglia
#object_type_xsd string string string float string float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 282.33246 1345.3375 1234.9867 1746.01021 1816.58672 987.30158 985.20842 992.31518 1938.18633 483.74251 1014.4311 1105.99804 1322.68475
Gene:11972 1415671_at 2052.93328 4857.94191 4334.37924 5570.7746 5069.4342 10003.67543 8375.50934 4562.63434 6365.13781 3876.88382 6574.64413 4124.64609 6436.30151
Gene:57437 1415672_at 1899.1164 4772.48645 3792.98598 3805.33929 4838.26153 5777.39651 5353.20325 5596.9705 3473.09252 4867.9767 2852.25845 3813.56517 5284.66445
Gene:100678 1415673_at 108.62621 438.16461 457.32015 307.77654 171.6822 233.28677 135.47314 259.02976 304.06094 805.26477 546.22814 690.96752 593.85935
Gene:60409 1415674_a_at 386.60258 1182.30117 1118.26439 2261.76862 1539.45175 1276.71526 1107.20945 1072.70309 1823.29758 547.5883 1129.42718 904.95025 1424.09886
Gene:13481 1415675_at 419.573 598.58944 478.35445 537.12868 531.79982 903.24806 671.82516 562.89428 808.98918 268.68469 547.43594 443.96089 596.39313
Gene:19173 1415676_a_at 1787.23791 4305.44817 4088.5351 4439.30743 4688.8161 4305.03417 3546.63816 3771.36238 1647.066 903.98145 2130.72972 2301.14364 4291.07972
Gene:52585 1415677_at 909.28465 1076.88516 939.94344 810.65388 2497.83862 2537.94219 2072.5799 908.39256 1294.88662 506.62953 844.35751 774.04599 4381.67949
Gene:19042 1415678_at 836.26218 978.19934 1209.24113 1017.39023 1104.23056 1413.94673 1284.23291 1232.95288 1176.88666 3331.16166 2464.33886 2219.17346 1057.84386
Gene:66340 1415679_at 2880.69336 3393.85451 2832.54809 2694.04469 6868.96494 5973.39439 4714.7822 3380.28846 6658.84248 1901.22711 3457.99531 2502.07966 5068.17495
Gene:17222 1415680_at 236.01477 655.81406 613.72004 538.77811 553.40325 477.83666 468.95534 455.44224 528.42814 1063.38418 693.26895 567.85858 664.20273
Gene:94067 1415681_at 344.06257 847.41946 641.02658 882.6234 897.52059 972.89408 698.65595 713.43003 736.13923 1210.6725 453.68192 329.60463 937.20609
Gene:65246 1415682_at 54.60606 254.47319 127.44386 71.24735 114.46077 290.98185 217.89705 121.52789 252.04401 33.37694 114.00357 132.61141 184.28157
Gene:18107 1415683_at 1089.16506 3555.94039 3957.72581 6073.00325 4974.21396 3224.55397 3359.39363 3236.95181 1904.11652 2469.54529 2539.4395 2387.11935 4095.21848
Gene:11793 1415684_at 150.44586 459.94387 296.78307 315.54611 1269.16746 951.60851 631.92979 560.67312 348.45041 393.76146 94.68369 140.53353 830.89912
Gene:76784 1415685_at 93.34677 576.9154 362.01058 396.83187 633.39982 601.38891 704.04029 401.67962 584.03216 276.09185 222.49012 332.06036 497.16138
Gene:68365 1415686_at 617.81241 1630.77399 1312.56994 1222.59398 1450.97551 1778.38339 1582.38453 1005.07358 2037.22396 2707.41783 1661.16692 1527.79654 1426.06433
Gene:19156 1415687_a_at 3591.80798 23998.28654 21082.69055 17533.54451 40736.7633 73976.06816 64912.03433 54701.40193 4630.72083 814.68754 1176.2823 1223.30397 31803.88867
Gene:67128 1415688_at 470.75002 915.3573 855.73958 1209.2809 1619.22015 1434.46182 1209.20839 910.26164 1146.97595 1946.87881 952.01839 1496.83079 1306.89105
Gene:72739 1415689_s_at 323.79696 190.03475 57.75248 90.46245 325.50071 220.4778 166.77768 141.16467 713.39548 610.92838 237.22217 429.84828 233.33784
Gene:94064 1415690_at 484.03307 3606.08994 3050.25073 3327.22549 7081.77091 2283.12989 1711.38548 4129.63981 1472.71142 437.04178 610.42263 587.27896 2903.81178
Gene:13383 1415691_at 516.03766 351.62556 332.27484 271.35902 132.40891 503.1774 508.81876 384.12819 748.63456 1869.38331 1327.57761 1159.43019 513.43963
Gene:12330 1415692_s_at 2042.27836 8440.09529 7381.59559 6643.58725 6948.87986 7941.173 6572.64298 5903.67155 8565.36545 8411.77122 7065.37222 6930.0906 9532.05491
Gene:67819 1415693_at 288.08972 566.79006 491.61996 483.60811 862.84185 573.85608 502.35042 436.87415 574.38001 659.77368 839.05573 1017.20973 688.22265
Gene:22375 1415694_at 11.46703 228.40734 232.32777 553.20603 237.06339 305.81534 237.94039 2409.44447 162.58524 69.12298 180.67241 179.59449 199.39375
Gene:26440 1415695_at 3210.17477 11992.63994 9875.95267 7955.43396 9375.42261 5976.33264 4798.19022 5192.8032 6895.59386 7591.06239 4779.15352 4039.99252 8139.86393
Gene:20224 1415696_at 544.92341 803.49587 967.14548 886.66951 684.55633 958.00165 810.6947 812.3695 1636.72762 1236.16289 1410.78195 1643.0576 940.55832
Gene:23881 1415697_at 449.14511 1110.879 919.85288 1545.81038 499.32487 882.24206 690.98293 1616.14931 690.00177 964.68355 807.49577 687.00107 673.04594
Gene:105348 1415698_at 148.72406 247.2126 189.43609 87.65823 143.77426 470.10797 371.80656 145.56204 165.58984 623.37425 394.75602 400.77126 461.63855
Gene:209318 1415699_a_at 270.81795 1268.12335 1098.31109 985.89313 563.51057 1077.65636 1028.12609 868.76774 952.93455 2446.21754 1693.62464 1359.08012 1233.60691
Gene:67437 1415700_a_at 995.17553 5965.63301 5104.10606 6556.40248 6134.49217 3899.91701 3099.45395 4083.43733 5405.74232 6026.04787 3665.5848 4179.34579 4234.3649
Gene:65019 1415701_x_at 8523.86805 40173.82879 38802.52615 35531.28301 37009.20696 42435.24893 41112.95017 36488.73725 49649.66235 30975.87695 23277.0306 20555.46896 42194.36666
Gene:13016 1415702_a_at 1126.24236 1889.86599 1527.36736 1097.15349 1301.25279 2455.97152 1854.40941 1413.03682 2817.61695 1326.31152 2216.24607 2406.53531 2161.97901
Gene:59026 1415703_at 207.2085 366.39306 410.50024 482.71995 267.60326 635.63325 660.19946 624.32585 1275.39587 616.65461 777.81642 599.6026 546.93133
Gene:321022 1415704_a_at 1050.78214 2243.44031 2399.52642 2656.75295 1951.24573 2798.85444 2572.38578 4023.45721 2166.71737 1384.24119 1161.16504 1491.8652 2637.45054
Gene:66818 1415705_at 290.78744 709.85288 667.84587 544.404 759.37522 572.75015 430.29634 522.04236 592.00923 399.81367 631.23511 601.44591 732.73717
Gene:12847 1415706_at 1197.6399 2896.71231 2785.91379 4145.55974 2495.91165 3001.03242 2894.17384 2788.6318 4864.14628 4133.25552 2585.99585 2366.51656 3738.51078
Gene:99152 1415707_at 349.96088 1347.08961 1224.66549 1219.90896 1002.68517 1496.4578 1476.64393 1034.84757 1019.23901 582.29355 720.9212 699.69539 1552.26835
Gene:544752 1415708_at 758.953 609.31679 575.87502 554.69634 421.34181 1217.48025 946.62037 790.97341 2512.16616 1694.90025 1326.79949 1045.51835 649.38939
Gene:107338 1415709_s_at 93.06353 134.24947 97.67488 167.44388 200.8175 155.42534 173.95716 102.82337 272.0805 231.38322 153.90763 141.77275 137.24549
Gene:231430 1415710_at 102.57488 361.97935 401.6736 694.23169 528.46523 196.41864 173.57594 629.92318 358.80379 531.88369 177.15978 307.95349 311.09637
Gene:211673 1415711_at 648.77966 678.77058 730.36682 887.29745 1033.00063 1308.34342 1132.72904 1586.49035 1334.0389 1142.00144 822.05596 785.32228 806.73286
Gene:360216 1415712_at 188.70777 109.89453 151.65013 98.16951 272.02915 275.2429 250.47123 152.05615 329.1892 276.60185 178.89112 257.09075 99.94632
Gene:27225 1415713_a_at 92.96237 556.51682 652.607 1039.17215 699.78528 315.46614 302.60457 874.35829 822.6586 312.32734 497.07571 418.22059 587.61408
Gene:66618 1415714_a_at 443.75198 1348.17768 1323.88294 1612.68575 2321.38289 1105.49958 1034.6786 1584.29933 1341.3389 334.00048 199.0369 184.46422 899.20137
Gene:68366 1415715_at 37.18932 205.48659 61.90962 69.97291 268.85658 238.20144 93.3397 104.65452 298.35859 380.86354 146.01684 245.60814 194.17595
Gene:100043813 1415716_a_at 5261.81416 21597.97833 20389.61029 16838.08397 26729.0383 18881.19419 21752.94962 14948.64837 45789.67272 34333.68045 20714.28498 15461.19569 23982.58318
Gene:57294 1415716_a_at 5261.81416 21597.97833 20389.61029 16838.08397 26729.0383 18881.19419 21752.94962 14948.64837 45789.67272 34333.68045 20714.28498 15461.19569 23982.58318
Gene:66743 1415717_at 224.95102 335.88618 271.09427 260.32463 175.2073 490.87612 306.9751 383.46799 451.39447 199.21284 391.86129 388.25045 307.70469
Gene:50724 1415718_at 270.69289 347.13967 317.80525 252.33362 367.23996 552.33225 451.97994 357.39416 721.22644 713.19197 442.0411 431.59551 344.01646
Gene:74252 1415719_s_at 164.73563 513.24756 499.47828 328.89072 229.67516 319.80822 278.69147 207.81 310.0609 261.22605 220.42438 266.02901 290.76542
Gene:66591 1415720_s_at 224.55967 367.88971 334.25764 364.67956 364.48088 239.13325 130.20392 132.29182 963.83839 243.47573 550.79983 511.00204 144.91806
Gene:74763 1415721_a_at 328.52017 314.11425 281.79943 181.9574 498.24591 608.23293 475.78507 304.17855 655.98759 366.24522 401.25764 380.60629 406.34827
Gene:66201 1415722_a_at 893.37587 1071.71091 1160.9507 1537.2109 1345.36996 750.44424 733.66607 1425.88732 768.59526 787.9376 1010.18121 1184.59467 1075.59017
Gene:217869 1415723_at 1772.05793 2075.26492 2619.90753 2177.01033 893.17318 2512.82056 2161.44216 2393.09431 3571.86341 4382.95434 2877.89446 3303.78576 2321.30824
Gene:12540 1415724_a_at 2667.94958 11552.94693 8668.8694 8290.13932 6621.95943 9913.83917 8026.1289 8670.75557 7670.53568 3507.06405 7029.60132 5829.53361 13391.73833
Gene:106298 1415725_at 58.04396 265.81153 275.54787 300.34321 171.15415 228.96227 256.78934 263.66936 226.55746 552.80732 275.414 311.37701 297.35124
Gene:81702 1415726_at 233.67106 538.8762 526.55865 896.29214 629.02662 611.58552 650.49946 1698.58071 874.04869 1000.84139 599.33209 666.42469 485.23327
Gene:246703 1415727_at 980.94328 2022.84592 1871.14031 1429.00222 2363.30966 1514.14073 1299.42586 790.26907 918.13217 740.22938 1039.61201 692.02415 1773.4632
Gene:54196 1415728_at 258.97862 186.96392 153.88257 209.53059 101.77827 221.48057 166.1724 190.93223 181.36031 10.02192 127.35497 101.41332 136.30849
Gene:18607 1415729_at 279.63257 528.89692 475.85189 599.58277 534.58626 716.1073 595.92332 340.40598 670.58715 1184.03257 548.09986 520.04991 635.47245
Gene:269061 1415730_at 461.81385 501.84289 552.14289 465.61016 400.05409 686.62207 609.75776 700.33589 704.0282 1808.16288 1032.75924 1174.7822 471.65534
Gene:52477 1415731_at 73.71188 76.51974 62.38845 63.79172 48.84711 132.87312 83.61621 67.41005 187.75712 64.38495 88.1771 72.94886 62.88875
Gene:193742 1415732_at 171.93205 239.37522 239.15549 339.53705 88.01771 212.86918 202.86415 835.57942 729.27144 335.28241 525.37546 355.8151 209.16371
Gene:68512 1415733_a_at 473.10691 1968.95378 1780.21933 1544.4205 945.29595 1300.86566 949.53258 825.17318 1342.56528 749.65696 1045.93867 709.51586 1215.7441
Gene:19349 1415734_at 3162.2281 6460.7994 6361.52814 5868.55775 6159.68489 12675.00684 11766.95929 7897.51073 5287.94508 3129.06866 4974.47322 5762.19142 6092.82066
Gene:13194 1415735_at 365.94945 1116.02712 942.41391 1059.8975 520.04642 1060.75738 1098.98461 611.29665 1605.84762 505.1402 676.99462 813.11617 1494.39507
Gene:56612 1415736_at 963.45184 6306.55721 5164.00002 4568.29086 8579.24243 7610.83751 5971.86484 4783.30545 7924.03494 470.7101 719.33193 441.76607 5740.46124
Gene:54391 1415737_at 343.11289 819.02566 588.40269 325.29066 479.97806 665.47146 538.89549 531.47701 1355.53511 982.84083 887.70313 1170.95894 696.4483
Gene:66073 1415738_at 172.98659 1028.36334 844.82004 714.66037 2149.59732 714.00943 496.0746 497.15313 748.56559 140.77102 204.59346 265.93897 941.84767
Gene:68035 1415739_at 712.05029 1154.99508 1284.05405 1583.38714 1485.09801 1437.21189 1450.07274 1311.37455 1521.50238 1106.78771 1342.44644 998.19119 1095.07429
Gene:19184 1415740_at 307.05045 2574.46361 2507.4773 2990.06198 1738.12969 1912.82645 1786.88503 2128.02494 1553.61938 272.95119 609.8473 907.86014 2644.43924
Gene:21982 1415741_at 1265.42254 1785.9851 1754.6022 2411.84455 2942.27629 6708.1857 5915.31729 3354.78937 1175.32899 1634.96286 1235.24322 1174.7558 2937.20353
Gene:11993 1415742_at 247.17281 1428.98307 1114.86308 1135.52908 1722.22955 1280.51841 1230.97722 1057.11412 746.34988 111.10317 459.72744 407.04408 1044.22857
Gene:15184 1415743_at 164.23091 259.40324 142.47231 61.397 332.20436 255.98863 188.45022 18.76987 275.46403 219.42686 287.64277 295.85262 159.78079
Gene:14976 1415744_at 787.85678 1599.36933 1427.04551 1318.60356 1340.53542 1146.2044 1213.56554 1108.52503 1096.78823 158.09814 592.30826 777.94145 1195.79335
Gene:13185 1415745_a_at 923.40633 1694.71446 873.92138 1065.01054 1807.4536 1478.71911 893.09979 682.04976 174.6802 267.17204 177.95554 213.84722 1124.16509
Gene:71722 1415746_at 186.65499 444.9732 313.99924 187.29331 756.22755 1168.2697 1169.66912 323.25923 326.07793 207.4694 342.30231 220.22129 482.86481
Gene:66878 1415747_s_at 1521.91848 2732.95171 3608.48376 3199.44548 2309.63686 2599.94398 2300.90233 2409.37646 1361.16686 3047.71264 1646.05219 1575.70265 4019.81573
Gene:59288 1415748_a_at 184.68532 1157.47025 912.27615 956.0394 1338.597 913.63676 731.71197 755.24058 1155.7496 132.3775 389.50641 320.25933 958.0046
Gene:54170 1415749_a_at 985.10022 5039.46986 4612.66408 4605.09949 7260.23761 8679.14682 7628.15745 8854.19175 5799.02661 7819.13186 4273.75066 4079.0804 5658.27398
Gene:213773 1415750_at 58.67046 207.93473 171.69384 174.10711 82.59047 196.51976 138.09601 142.49533 100.03798 37.29638 96.757 84.18032 197.58485
Gene:15441 1415751_at 924.45326 2011.54836 1795.52582 1692.94288 1308.12746 2044.77121 1507.23625 2304.33253 2543.12133 1757.98479 1026.63285 1099.76887 1127.4471
Gene:407819 1415752_at 1023.46565 2771.60007 2622.14024 3351.71786 3082.25848 3754.79581 3022.62966 3299.50402 2349.48637 1205.60566 1626.82432 1290.84043 2705.46813
Gene:216169 1415753_at 277.99872 984.57463 735.83259 440.92332 844.70494 945.90362 721.74931 321.87663 1136.65888 1276.5817 1210.48258 615.02734 1088.79669
Gene:69833 1415754_at 370.7752 2251.0398 1828.32566 1403.49191 884.18795 1561.00816 1222.12334 1193.85303 1462.47892 186.65161 668.48849 736.43806 1564.84689
Gene:66589 1415755_a_at 257.77117 1031.92887 998.6579 1169.11911 1333.82906 1339.48422 1014.52917 1150.75807 991.97037 550.92133 1225.48498 1076.64634 1008.52173
Gene:20615 1415756_a_at 141.9085 760.54279 634.58259 537.91506 903.63757 1610.64685 1144.68524 650.89597 1089.06543 1016.13658 635.29012 575.62002 797.46753
Gene:107338 1415757_at 27.03825 117.97085 102.51333 171.28947 244.74347 192.63752 229.91462 111.93484 465.51173 84.64213 65.29155 89.44862 112.07415
* Row count is limited to 100.