Contact

Link and Publish your data

to the Linked Open Data Community

Linkdata Work Information

Mammalian PromoterCAD template files for adding regulatory motif data

Open Smart Phone View

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
0

value

useful
0
Loading...



Select a file name to see the detais.
Show API List
   
#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Spleen_Lymph_node_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:bone label:bone_marrow label:lymph_nodes label:spleen
#object_type_xsd string string string float string float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 663.37441 884.3392 1441.35655 967.7167
Gene:11972 1415671_at 2290.76014 3247.15413 2141.46971 2101.5176
Gene:57437 1415672_at 4292.98817 4525.20137 3714.58563 3547.76752
Gene:100678 1415673_at 218.64129 200.30224 341.19113 283.01847
Gene:60409 1415674_a_at 624.23308 617.8478 709.34752 553.30797
Gene:13481 1415675_at 317.00392 384.50029 465.92233 357.28607
Gene:19173 1415676_a_at 2159.12361 2572.93137 2221.1021 1712.33898
Gene:52585 1415677_at 395.10842 555.02524 768.05483 739.64006
Gene:19042 1415678_at 1003.3542 1068.94335 637.31543 608.62744
Gene:66340 1415679_at 3524.00669 3336.36847 4482.10647 4134.37113
Gene:17222 1415680_at 885.15087 830.06893 622.08253 560.86436
Gene:94067 1415681_at 626.2446 720.39182 737.93971 855.00412
Gene:65246 1415682_at 4416.7089 8310.46101 222.37642 332.95447
Gene:18107 1415683_at 2173.7906 2539.87639 2581.18272 2068.055
Gene:11793 1415684_at 302.10808 339.73907 477.54932 349.48422
Gene:76784 1415685_at 279.76685 434.35029 440.71728 274.34843
Gene:68365 1415686_at 937.43273 851.86851 955.49294 1083.21492
Gene:19156 1415687_a_at 13263.45176 16817.52342 22965.81916 22037.30769
Gene:67128 1415688_at 1043.42015 908.54209 1195.52385 837.34823
Gene:72739 1415689_s_at 371.46799 337.22009 447.34011 865.939
Gene:94064 1415690_at 1278.03461 1259.99166 1334.21489 624.66381
Gene:13383 1415691_at 821.46186 690.43838 811.66219 1042.18867
Gene:12330 1415692_s_at 8349.29056 7279.41561 7072.34954 6321.29602
Gene:67819 1415693_at 415.51141 399.3581 298.92896 288.23558
Gene:22375 1415694_at 44.87564 72.5971 150.98418 114.94254
Gene:26440 1415695_at 7706.87693 8489.90525 6220.59332 4768.33066
Gene:20224 1415696_at 967.1048 524.20895 831.07087 883.95788
Gene:23881 1415697_at 577.96149 526.27715 695.28455 599.5131
Gene:105348 1415698_at 487.44257 558.36267 375.43702 311.92195
Gene:209318 1415699_a_at 582.75231 610.89023 798.56214 807.95786
Gene:67437 1415700_a_at 3437.76543 2482.18836 2749.20335 2549.66795
Gene:65019 1415701_x_at 43040.21849 35209.35737 48189.7784 46097.6914
Gene:13016 1415702_a_at 3737.5548 4348.53008 2305.67905 3110.28119
Gene:59026 1415703_at 818.87752 1090.96436 1734.54453 2201.60597
Gene:321022 1415704_a_at 3244.95836 2124.38434 1980.46707 2252.70331
Gene:66818 1415705_at 345.89336 369.65846 269.47884 175.76528
Gene:12847 1415706_at 2648.98551 2985.6458 3987.87727 3662.18923
Gene:99152 1415707_at 577.96834 777.5435 749.88923 707.95661
Gene:544752 1415708_at 2560.45631 1919.10094 2125.6935 2494.42717
Gene:107338 1415709_s_at 118.77671 173.72322 181.42089 251.65111
Gene:231430 1415710_at 208.1452 211.71507 313.7505 332.26927
Gene:211673 1415711_at 1640.04346 1497.28413 1139.4389 1329.1512
Gene:360216 1415712_at 369.42147 323.11114 209.82154 316.59192
Gene:27225 1415713_a_at 277.73037 368.06119 543.81638 524.48497
Gene:66618 1415714_a_at 788.29599 978.28419 937.54663 572.89941
Gene:68366 1415715_at 118.00302 191.36966 99.28504 101.77436
Gene:100043813 1415716_a_at 36362.58538 33117.81082 55608.90033 56982.23471
Gene:57294 1415716_a_at 36362.58538 33117.81082 55608.90033 56982.23471
Gene:66743 1415717_at 210.74036 257.47563 341.58676 399.0235
Gene:50724 1415718_at 203.1709 221.22013 321.09708 423.96563
Gene:74252 1415719_s_at 470.97211 452.76148 239.166 329.32848
Gene:66591 1415720_s_at 384.14418 513.42334 150.36846 158.1597
Gene:74763 1415721_a_at 369.45797 441.90414 514.72849 609.73259
Gene:66201 1415722_a_at 609.14672 701.44339 582.44151 522.73862
Gene:217869 1415723_at 4768.88692 5396.83514 3449.17721 3397.03635
Gene:12540 1415724_a_at 6403.89065 6319.21541 7731.3149 6347.8241
Gene:106298 1415725_at 198.72901 116.66659 134.22423 148.72277
Gene:81702 1415726_at 846.11616 791.16207 739.36807 675.78891
Gene:246703 1415727_at 622.69461 578.54787 705.76833 568.18395
Gene:54196 1415728_at 321.69014 305.96584 238.55949 441.099
Gene:18607 1415729_at 1191.193 1145.51428 679.73727 665.81763
Gene:269061 1415730_at 1029.64664 1143.54428 1360.65493 1794.29026
Gene:52477 1415731_at 140.98919 124.97834 151.94301 190.39835
Gene:193742 1415732_at 270.80875 434.8543 234.27957 292.62244
Gene:68512 1415733_a_at 830.90694 786.83948 879.15691 916.01231
Gene:19349 1415734_at 2320.23319 2824.13121 3563.01952 2724.66318
Gene:13194 1415735_at 1371.11587 1562.68796 928.9581 1154.43538
Gene:56612 1415736_at 4304.4449 3076.78137 8638.2359 5478.2962
Gene:54391 1415737_at 728.39263 700.15423 818.26792 676.32611
Gene:66073 1415738_at 289.88338 282.41151 416.98269 281.92137
Gene:68035 1415739_at 622.61996 885.48631 1236.54842 1419.5663
Gene:19184 1415740_at 1364.45751 1769.23729 1520.00428 1229.90304
Gene:21982 1415741_at 2005.23246 2249.07474 1850.46552 1421.72933
Gene:11993 1415742_at 464.73801 696.36472 801.47759 813.86006
Gene:15184 1415743_at 107.5465 128.49295 108.44767 160.09573
Gene:14976 1415744_at 1445.19731 1492.91565 880.9651 944.85122
Gene:13185 1415745_a_at 488.74022 416.09974 567.8353 489.02474
Gene:71722 1415746_at 196.74596 264.70437 291.12625 599.26287
Gene:66878 1415747_s_at 4419.73204 4246.78447 1622.43908 1508.79841
Gene:59288 1415748_a_at 477.28104 641.35908 741.56907 689.88435
Gene:54170 1415749_a_at 1220.92499 1088.21983 1293.12041 1092.96673
Gene:213773 1415750_at 63.5004 114.47572 110.67499 115.53875
Gene:15441 1415751_at 2584.01145 2981.75548 2911.96125 2469.89245
Gene:407819 1415752_at 1589.92426 1482.34521 1434.346 1333.38259
Gene:216169 1415753_at 556.11647 1018.94919 1703.89466 2046.11588
Gene:69833 1415754_at 1103.95491 1108.58608 824.22047 590.00909
Gene:66589 1415755_a_at 583.84892 996.79594 882.59613 997.84443
Gene:20615 1415756_a_at 353.1873 231.91941 635.13422 412.77877
Gene:107338 1415757_at 49.3844 82.22046 208.05247 281.54671
* Row count is limited to 100.