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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Stem_cells_Progenitors_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:common_myeloid_progenitor label:embryonic_stem_line_Bruce4_p13 label:embryonic_stem_line_V26_2_p16 label:granulo_mono_progenitor label:mega_erythrocyte_progenitor label:stem_cells__HSC
#object_type_xsd string string string float string float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 772.06964 1718.99062 1800.424 1025.80171 420.1004 401.89326
Gene:11972 1415671_at 759.08416 2977.52371 2139.05783 1094.43988 960.45076 926.40648
Gene:57437 1415672_at 3435.62764 4352.34932 3678.18645 3699.39891 1863.2513 2817.12015
Gene:100678 1415673_at 298.6268 1135.83833 1147.87135 321.52806 306.10418 300.48952
Gene:60409 1415674_a_at 504.61308 1054.73069 1176.32202 439.94947 821.15083 613.53901
Gene:13481 1415675_at 326.70559 478.66363 383.17254 311.20862 548.26844 299.57541
Gene:19173 1415676_a_at 3128.67106 6348.34698 4843.03774 3782.31556 3803.30941 3492.04288
Gene:52585 1415677_at 313.10095 284.80173 330.47606 357.86392 185.31657 257.59706
Gene:19042 1415678_at 866.56784 1230.55169 2121.76018 830.95282 1428.42726 857.12327
Gene:66340 1415679_at 2151.16981 1870.21214 1846.10729 1745.74741 2660.75217 2828.78504
Gene:17222 1415680_at 871.25613 940.75008 826.73346 979.16826 1601.85428 726.7713
Gene:94067 1415681_at 277.61278 1348.57893 1308.34854 317.55571 647.77861 300.21362
Gene:65246 1415682_at 255.29416 627.89914 752.92113 231.0439 54.66494 180.82813
Gene:18107 1415683_at 1995.71987 4706.55518 4427.747 2482.99631 3059.7399 1892.46429
Gene:11793 1415684_at 204.4439 563.91137 478.6851 218.2581 219.36386 161.60571
Gene:76784 1415685_at 503.80339 646.211 515.7903 500.52165 783.37627 372.17988
Gene:68365 1415686_at 796.30067 514.43126 438.17667 969.3761 686.87653 845.78875
Gene:19156 1415687_a_at 2231.31327 2006.19802 2902.72261 3180.77094 447.17217 1272.79844
Gene:67128 1415688_at 1103.6555 2200.21575 2578.3914 1059.8368 1395.9119 1240.46135
Gene:72739 1415689_s_at 623.24065 75.24011 103.04136 594.88127 348.1988 471.2074
Gene:94064 1415690_at 584.46301 2288.27376 2255.17611 580.10868 1241.96096 461.04825
Gene:13383 1415691_at 622.91013 767.04631 831.25857 550.77875 698.33932 1098.63264
Gene:12330 1415692_s_at 7452.70098 7127.76206 8443.0397 10291.57638 10212.90305 8567.58597
Gene:67819 1415693_at 226.73553 147.68951 175.31499 267.79895 388.62965 190.55206
Gene:22375 1415694_at 106.60877 233.56413 255.38054 118.83934 54.00349 40.39856
Gene:26440 1415695_at 6267.77944 8233.33627 9066.55692 6156.88471 5734.19164 4530.84806
Gene:20224 1415696_at 932.11101 816.98106 834.66833 1028.9867 866.80179 997.22165
Gene:23881 1415697_at 657.1527 3007.67638 2239.93169 840.27078 920.03769 617.12024
Gene:105348 1415698_at 412.33704 1385.11897 1267.12941 115.35591 1103.04154 175.55071
Gene:209318 1415699_a_at 1680.71498 2117.60755 1953.88719 1720.67852 2759.44296 1600.50237
Gene:67437 1415700_a_at 3324.93096 2723.31986 3307.52991 4983.16067 2266.50547 2939.04429
Gene:65019 1415701_x_at 21289.67768 40971.52808 43448.32378 19080.25454 28049.00164 32921.49741
Gene:13016 1415702_a_at 1823.58405 815.27227 916.28577 1636.34947 3131.83666 1955.02383
Gene:59026 1415703_at 375.67243 1137.56986 1287.46475 429.84014 426.11021 252.62
Gene:321022 1415704_a_at 1234.18326 5762.47454 6706.50591 1373.25503 1616.27043 1631.25481
Gene:66818 1415705_at 441.35253 288.12507 267.89138 340.31186 368.79257 454.70923
Gene:12847 1415706_at 2131.96668 2040.18882 2044.23243 2771.40643 1453.17939 1563.65386
Gene:99152 1415707_at 666.31139 967.15132 719.79857 801.09777 617.42126 555.12328
Gene:544752 1415708_at 1002.27807 1525.77332 1478.15444 825.25328 950.2142 1293.24744
Gene:107338 1415709_s_at 96.43643 125.21064 102.00421 149.10207 125.40557 106.77879
Gene:231430 1415710_at 417.17291 1242.94597 690.3766 406.45675 520.98691 302.3302
Gene:211673 1415711_at 880.79675 251.9965 270.88567 1153.16965 841.43054 859.89141
Gene:360216 1415712_at 199.7155 153.47115 137.3759 206.13071 182.83363 190.24012
Gene:27225 1415713_a_at 481.83565 968.8824 853.9765 412.57791 487.82265 311.55268
Gene:66618 1415714_a_at 206.68461 1329.82298 874.97839 167.76347 419.19532 256.18733
Gene:68366 1415715_at 141.41048 28.48596 54.0166 134.09777 203.01384 116.39851
Gene:100043813 1415716_a_at 18128.63244 37375.36774 35804.28806 14124.21383 34307.9939 38998.15519
Gene:57294 1415716_a_at 18128.63244 37375.36774 35804.28806 14124.21383 34307.9939 38998.15519
Gene:66743 1415717_at 443.3198 633.63546 636.73119 411.16982 388.05103 388.12891
Gene:50724 1415718_at 255.55773 492.91495 427.71894 254.72514 393.17816 358.97794
Gene:74252 1415719_s_at 388.71482 610.7613 524.77723 393.73773 597.8536 320.38405
Gene:66591 1415720_s_at 150.48886 203.19619 211.83922 165.39787 119.11853 118.22281
Gene:74763 1415721_a_at 225.39696 161.7865 150.04601 297.69343 134.95384 122.68246
Gene:66201 1415722_a_at 782.53405 903.15421 747.41468 857.69334 577.2205 561.26891
Gene:217869 1415723_at 3185.88697 2627.46974 2570.06271 2909.4054 2995.1985 3085.74916
Gene:12540 1415724_a_at 4311.48696 2681.49129 3577.31623 5298.4256 2586.35327 3521.60805
Gene:106298 1415725_at 452.27057 1996.33557 1890.14524 401.18111 730.25552 393.63079
Gene:81702 1415726_at 536.26109 1108.08752 1062.09403 541.19511 634.49294 568.34184
Gene:246703 1415727_at 999.14662 698.79534 693.54583 1150.00819 1042.74897 1212.96272
Gene:54196 1415728_at 152.21994 516.7809 517.58098 170.04278 165.36136 114.41493
Gene:18607 1415729_at 294.14754 533.39706 488.99719 408.12755 548.03628 442.26487
Gene:269061 1415730_at 777.49662 765.04978 865.2372 700.66455 1045.86322 1030.12513
Gene:52477 1415731_at 85.98651 69.91873 56.44272 66.07383 79.28564 112.73091
Gene:193742 1415732_at 244.95057 87.63588 95.5794 199.35971 422.41566 221.19975
Gene:68512 1415733_a_at 1308.82126 3560.5736 3969.47912 1309.51367 3231.06957 1204.10441
Gene:19349 1415734_at 2848.74277 2299.72868 2487.14086 3440.18657 1642.98199 1868.53691
Gene:13194 1415735_at 1150.7855 3448.6175 4533.4835 1559.21194 1331.91383 751.47022
Gene:56612 1415736_at 673.13697 2822.58801 2451.04567 410.40155 941.70257 565.21554
Gene:54391 1415737_at 670.27979 400.33546 312.69529 591.16323 925.78593 747.14916
Gene:66073 1415738_at 262.17454 674.28701 799.35784 366.88581 136.63782 232.87064
Gene:68035 1415739_at 864.38575 1292.4057 1251.05042 787.28836 1081.76276 852.80904
Gene:19184 1415740_at 1072.32628 4635.49177 4809.90094 1464.31416 941.35627 824.46175
Gene:21982 1415741_at 1680.94492 1995.48361 2220.43243 4021.7741 1571.16067 1490.23177
Gene:11993 1415742_at 377.85511 323.12666 250.4056 416.08233 394.34112 179.82396
Gene:15184 1415743_at 164.0809 76.68407 78.2562 271.98179 13.29452 87.40003
Gene:14976 1415744_at 1773.43482 4830.87801 3723.21465 2010.62434 2357.99833 1373.63532
Gene:13185 1415745_a_at 623.65147 418.78377 457.59671 768.06304 543.28291 593.49942
Gene:71722 1415746_at 127.78783 168.90935 180.72635 105.44771 170.08206 169.76418
Gene:66878 1415747_s_at 1337.82993 990.82182 966.24435 1265.90936 1487.23404 1429.72043
Gene:59288 1415748_a_at 246.46805 285.30043 653.5346 283.77893 198.97325 131.04785
Gene:54170 1415749_a_at 1023.46842 1072.17361 1077.35684 1150.78202 879.55102 907.63145
Gene:213773 1415750_at 422.89433 739.55066 599.71681 489.07955 296.5751 136.0447
Gene:15441 1415751_at 2725.24234 291.21829 331.56611 2148.88576 1871.89682 3779.69689
Gene:407819 1415752_at 649.48427 1277.61388 1382.05954 647.34485 763.54242 639.67952
Gene:216169 1415753_at 529.19935 1527.92453 1305.24824 514.83797 863.22958 487.05636
Gene:69833 1415754_at 1582.9461 4422.5143 3952.72157 1578.59773 2640.16143 1518.89695
Gene:66589 1415755_a_at 829.44234 1449.84103 1531.96149 972.8541 503.0422 421.06099
Gene:20615 1415756_a_at 288.08111 396.59481 267.8708 258.36041 192.6215 269.95408
Gene:107338 1415757_at 50.74774 144.01066 131.4649 71.50858 61.50598 35.71758
* Row count is limited to 100.