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GenoCon2 Challenge A - Developmental Genomic (AtGenExpress + PPDB promoter motif)

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Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

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File Name
AtGenExpress_PPDB_Flowering			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	21.5KB
Table Data (Excel)	2012.9.21	49.0KB
RDF (Turtle)	2012.9.21	78.2KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Fruit_Seeds			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	13.9KB
Table Data (Excel)	2012.9.21	31.5KB
RDF (Turtle)	2012.9.21	51.0KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Leaf			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	16.4KB
Table Data (Excel)	2012.9.21	37.5KB
RDF (Turtle)	2012.9.21	59.2KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Root			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	13.1KB
Table Data (Excel)	2012.9.21	30.0KB
RDF (Turtle)	2012.9.21	48.0KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Seedling			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	15.1KB
Table Data (Excel)	2012.9.21	34.5KB
RDF (Turtle)	2012.9.21	55.3KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Stem			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	12.2KB
Table Data (Excel)	2012.9.21	27.5KB
RDF (Turtle)	2012.9.21	44.7KB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Whole_Plant			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	12.2KB
Table Data (Excel)	2012.9.21	27.5KB
RDF (Turtle)	2012.9.21	44.9KB
		その他の形式のAPIリストを表示
Octamer_elements			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	16.2KB
Table Data (Excel)	2012.9.21	50.0KB
RDF (Turtle)	2012.9.21	115.1KB
		その他の形式のAPIリストを表示

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Contributor Send Message	GenoCon
Collaborators
Website	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-...
Reference	http://arabidopsis.org/servlets/TairOb...
Total downloads	3203
Created date	Jul 31, 2012
Last update date	Sep 21, 2012

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GenoCon2 Challenge A - Developmental Genomic (AtGenExpress + PPDB promoter motif)

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