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GenoCon2 Challenge A - Developmental Genomic (AtGenExpress + PPDB promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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AtGenExpress_PPDB_Flowering
Table Data (Text)
2012.9.21
21.5KB
Table Data (Excel)
2012.9.21
49.0KB
RDF (Turtle)
2012.9.21
78.2KB
AtGenExpress_PPDB_Fruit_Seeds
Table Data (Text)
2012.9.21
13.9KB
Table Data (Excel)
2012.9.21
31.5KB
RDF (Turtle)
2012.9.21
51.0KB
AtGenExpress_PPDB_Leaf
Table Data (Text)
2012.9.21
16.4KB
Table Data (Excel)
2012.9.21
37.5KB
RDF (Turtle)
2012.9.21
59.2KB
AtGenExpress_PPDB_Root
Table Data (Text)
2012.9.21
13.1KB
Table Data (Excel)
2012.9.21
30.0KB
RDF (Turtle)
2012.9.21
48.0KB
AtGenExpress_PPDB_Seedling
Table Data (Text)
2012.9.21
15.1KB
Table Data (Excel)
2012.9.21
34.5KB
RDF (Turtle)
2012.9.21
55.3KB
AtGenExpress_PPDB_Stem
Table Data (Text)
2012.9.21
12.2KB
Table Data (Excel)
2012.9.21
27.5KB
RDF (Turtle)
2012.9.21
44.7KB
AtGenExpress_PPDB_Whole_Plant
Table Data (Text)
2012.9.21
12.2KB
Table Data (Excel)
2012.9.21
27.5KB
RDF (Turtle)
2012.9.21
44.9KB
Octamer_elements
Table Data (Text)
2012.9.21
16.2KB
Table Data (Excel)
2012.9.21
50.0KB
RDF (Turtle)
2012.9.21
115.1KB
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Total downloads 2338
Created date Jul 31, 2012
Last update date Sep 21, 2012

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