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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293

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File Name
DiurnalHours_PPDB_COL_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_COL_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.2KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_DD_DDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
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DiurnalHours_PPDB_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.2KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.8KB
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DiurnalHours_PPDB_LDHH_SM			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_LDHH_ST			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.2KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_LER_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.2KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_LIGHT5_HIF138_13			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.6KB
Table Data (Excel)	2012.9.21	38.5KB
RDF (Turtle)	2012.9.21	76.2KB
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DiurnalHours_PPDB_LIGHT5_HIF138_8			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.6KB
Table Data (Excel)	2012.9.21	38.5KB
RDF (Turtle)	2012.9.21	76.2KB
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DiurnalHours_PPDB_LIGHT5_znknOX			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.5KB
Table Data (Excel)	2012.9.21	38.5KB
RDF (Turtle)	2012.9.21	76.2KB
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DiurnalHours_PPDB_LL12_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.4KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.1KB
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DiurnalHours_PPDB_LL23_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.4KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.1KB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.1KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.8KB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.4KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
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DiurnalHours_PPDB_lhyox_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.4KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.1KB
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DiurnalHours_PPDB_longday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	75.9KB
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DiurnalHours_PPDB_lux_2_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
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DiurnalHours_PPDB_phyB9_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
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DiurnalHours_PPDB_shortday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.9.21	19.3KB
Table Data (Excel)	2012.9.21	39.0KB
RDF (Turtle)	2012.9.21	76.0KB
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Contributor Send Message	GenoCon
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Website	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-...
Reference	http://diurnal.mocklerlab.org/diurnal_...
Total downloads	9258
Created date	Sep 14, 2012
Last update date	Sep 21, 2012

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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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