Diurnal fitted with sine wave

For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours.

Reference
http://www.ncbi.nlm.nih.gov/pubmed/18419293

Descriptions for each data table:

diurnal_COL_LDHH	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
diurnal_COL_SD	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
diurnal_DD_DDHC	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
diurnal_LDHC	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
diurnal_LDHH_SM	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
diurnal_LDHH_ST	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
diurnal_LER_SD	The data are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
diurnal_LIGHT5_HIF138_13	The data are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
diurnal_LIGHT5_HIF138_8	The data are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
diurnal_LIGHT5_znknOX	The data are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
diurnal_LL12_LDHH	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
diurnal_LL23_LDHH	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
diurnal_LLHC	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
diurnal_LL_LDHC	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
diurnal_LL_LLHC	The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
diurnal_lhyox_SD	The data are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
diurnal_longday	The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
diurnal_lux_2_LDHH	The data are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
diurnal_phyB9_SD	The data are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
diurnal_shortday	The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.

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File Name
diurnal_COL_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.27	4.4MB
Table Data (Excel)	2012.12.27	11.1MB
RDF (Turtle)	2012.12.27	41.2MB
		その他の形式のAPIリストを表示
diurnal_COL_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.3MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_DD_DDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.3MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_LDHH_SM			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_LDHH_ST			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_LER_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.3MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_LIGHT5_HIF138_13			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.6MB
Table Data (Excel)	2012.12.28	9.8MB
RDF (Turtle)	2012.12.28	41.3MB
		その他の形式のAPIリストを表示
diurnal_LIGHT5_HIF138_8			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.5MB
Table Data (Excel)	2012.12.28	9.8MB
RDF (Turtle)	2012.12.28	41.3MB
		その他の形式のAPIリストを表示
diurnal_LIGHT5_znknOX			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.5MB
Table Data (Excel)	2012.12.28	9.8MB
RDF (Turtle)	2012.12.28	41.3MB
		その他の形式のAPIリストを表示
diurnal_LL12_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_LL23_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.3MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_LL_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.1MB
		その他の形式のAPIリストを表示
diurnal_LL_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_lhyox_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_longday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_lux_2_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.5MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_phyB9_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示
diurnal_shortday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2012.12.28	4.4MB
Table Data (Excel)	2012.12.28	11.1MB
RDF (Turtle)	2012.12.28	41.2MB
		その他の形式のAPIリストを表示

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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://diurnal.mocklerlab.org/about
Reference	http://www.ncbi.nlm.nih.gov/pubmed/184...
Total downloads	1030
Created date	Dec 27, 2012
Last update date	Jan 15, 2013

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Diurnal fitted with sine wave

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