Circadian Genomic (DIURNAL + PPDB promoter motif) normalized

Normalized Expression Data of DIURNAL circadian conditions, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293

Descriptions for each data table:

DiurnalHours_PPDB_COL_LDHH_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_COL_SD_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_DD_DDHC_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PPDB_LDHC_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LDHH_SM_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PPDB_LDHH_ST_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PPDB_LER_SD_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_LIGHT5_HIF138_13_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_HIF138_8_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_znknOX_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LL12_LDHH_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PPDB_LL23_LDHH_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PPDB_LLHC_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LL_LDHC_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_LL_LLHC_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_lhyox_SD_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_longday_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PPDB_lux_2_LDHH_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_phyB9_SD_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_shortday_normalize	This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.

License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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File Name
DiurnalHours_PPDB_COL_LDHH_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.7MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_COL_SD_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.8MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.5MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_DD_DDHC_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LDHC_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.8MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.2MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LDHH_SM_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.8MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LDHH_ST_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.8MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LER_SD_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.8MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.5MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LIGHT5_HIF138_13_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	10.1MB
Table Data (Excel)	2013.3.5	16.4MB
RDF (Turtle)	2013.3.5	46.8MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LIGHT5_HIF138_8_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	10.0MB
Table Data (Excel)	2013.3.5	16.4MB
RDF (Turtle)	2013.3.5	46.7MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LIGHT5_znknOX_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	10.0MB
Table Data (Excel)	2013.3.5	16.4MB
RDF (Turtle)	2013.3.5	46.4MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL12_LDHH_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.9MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL23_LDHH_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.9MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LLHC_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.6	9.8MB
Table Data (Excel)	2013.3.6	16.5MB
RDF (Turtle)	2013.3.6	45.2MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL_LDHC_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_LL_LLHC_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_lhyox_SD_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.5	9.9MB
Table Data (Excel)	2013.3.5	16.5MB
RDF (Turtle)	2013.3.5	45.7MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_longday_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.6	9.8MB
Table Data (Excel)	2013.3.6	16.5MB
RDF (Turtle)	2013.3.6	45.6MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_lux_2_LDHH_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.6	9.9MB
Table Data (Excel)	2013.3.6	16.5MB
RDF (Turtle)	2013.3.6	46.0MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_phyB9_SD_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.6	9.9MB
Table Data (Excel)	2013.3.6	16.5MB
RDF (Turtle)	2013.3.6	45.7MB
		その他の形式のAPIリストを表示
DiurnalHours_PPDB_shortday_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.3.6	9.9MB
Table Data (Excel)	2013.3.6	16.5MB
RDF (Turtle)	2013.3.6	45.7MB
		その他の形式のAPIリストを表示

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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-... http://diurnal.mocklerlab.org/diurnal_...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/179... http://www.ncbi.nlm.nih.gov/pubmed/173... http://www.ncbi.nlm.nih.gov/pubmed/184...
Total downloads	1508
Created date	Mar 5, 2013
Last update date	May 10, 2013

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Circadian Genomic (DIURNAL + PPDB promoter motif) normalized

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