AtGenExpress median gene expression + PLACE promoter motif

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with PLACE (Plant Cis-acting Regulatory DNA Elements) motif database. We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE)
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_PLACE_Flowering_median	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PLACE_Fruit_Seeds_median	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PLACE_Leaf_median	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PLACE_Root_median	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PLACE_Seedling_median	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PLACE_Stem_median	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PLACE_Whole_Plant_median	This collection of Gene Expression Properties are associated with whole plant body parts.

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AtGenExpress_PLACE_Flowering_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	9.5MB
Table Data (Excel)	2013.4.30	16.5MB
RDF (Turtle)	2013.4.30	72.3MB
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AtGenExpress_PLACE_Fruit_Seeds_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	5.8MB
Table Data (Excel)	2013.4.30	9.5MB
RDF (Turtle)	2013.4.30	30.1MB
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AtGenExpress_PLACE_Leaf_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	7.1MB
Table Data (Excel)	2013.4.30	11.9MB
RDF (Turtle)	2013.4.30	44.9MB
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AtGenExpress_PLACE_Root_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	5.5MB
Table Data (Excel)	2013.4.30	8.9MB
RDF (Turtle)	2013.4.30	27.2MB
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AtGenExpress_PLACE_Seedling_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	6.5MB
Table Data (Excel)	2013.4.30	10.7MB
RDF (Turtle)	2013.4.30	37.8MB
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AtGenExpress_PLACE_Stem_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	5.0MB
Table Data (Excel)	2013.4.30	7.9MB
RDF (Turtle)	2013.4.30	21.7MB
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AtGenExpress_PLACE_Whole_Plant_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	5.1MB
Table Data (Excel)	2013.4.30	7.8MB
RDF (Turtle)	2013.4.30	21.6MB
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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://www.dna.affrc.go.jp/PLACE/ http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/984... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	578
Created date	Apr 5, 2013
Last update date	May 1, 2013

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AtGenExpress median gene expression + PLACE promoter motif

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