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AtGenExpress mean gene expression + PLACE promoter motif

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with PLACE (Plant Cis-acting Regulatory DNA Elements) motif database. We took the mean of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). For each motif, we calculated the position relative to the TSS as determined experimentally. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE)
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_PLACE_Flowering_mean
This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PLACE_Fruit_Seeds_mean
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PLACE_Leaf_mean
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PLACE_Root_mean
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PLACE_Seedling_mean
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PLACE_Stem_mean
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PLACE_Whole_Plant_mean
This collection of Gene Expression Properties are associated with whole plant body parts.
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File Name
AtGenExpress_PLACE_Flowering_mean
Table Data (Text)
2013.4.22
9.5MB
Table Data (Excel)
2013.4.22
16.5MB
RDF (Turtle)
2013.4.22
72.3MB
AtGenExpress_PLACE_Fruit_Seeds_mean
Table Data (Text)
2013.4.22
5.8MB
Table Data (Excel)
2013.4.22
9.5MB
RDF (Turtle)
2013.4.22
30.2MB
AtGenExpress_PLACE_Leaf_mean
Table Data (Text)
2013.4.22
7.1MB
Table Data (Excel)
2013.4.22
11.9MB
RDF (Turtle)
2013.4.22
44.9MB
AtGenExpress_PLACE_Root_mean
Table Data (Text)
2013.4.22
5.5MB
Table Data (Excel)
2013.4.22
8.9MB
RDF (Turtle)
2013.4.22
27.2MB
AtGenExpress_PLACE_Seedling_mean
Table Data (Text)
2013.4.22
6.5MB
Table Data (Excel)
2013.4.22
10.7MB
RDF (Turtle)
2013.4.22
37.8MB
AtGenExpress_PLACE_Stem_mean
Table Data (Text)
2013.4.22
5.0MB
Table Data (Excel)
2013.4.22
7.9MB
RDF (Turtle)
2013.4.22
21.7MB
AtGenExpress_PLACE_Whole_Plant_mean
Table Data (Text)
2013.4.22
5.1MB
Table Data (Excel)
2013.4.22
7.8MB
RDF (Turtle)
2013.4.22
21.6MB
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Total downloads 228
Created date Apr 22, 2013
Last update date Apr 29, 2013

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