Developmental Genomic (AtGenExpress Developmental gene expression + PPDB promoter motif) Triplicate Data
Full triplicate expression dataset of AtGenExpress plant developmental tissues,
combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB).
MotifExpress tool allows the plloting of all triplicate data points during the design process, so the user has some idea of the experimental variation in the measurements.
References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
Descriptions for each data table:
License
References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
Descriptions for each data table:
| AtGenExpress_PPDB_Flowering | This collection of Gene Expression Properties are associated with flowering tissues. |
| AtGenExpress_PPDB_Fruit_Seeds |
This collection of Gene Expression Properties are associated with fruit and seed tissues. |
| AtGenExpress_PPDB_Leaf |
This collection of Gene Expression Properties are associated with leaf tissues. |
| AtGenExpress_PPDB_Root |
This collection of Gene Expression Properties are associated with root tissues. |
| AtGenExpress_PPDB_Seedling |
This collection of Gene Expression Properties are associated with seedling tissues. |
| AtGenExpress_PPDB_Stem |
This collection of Gene Expression Properties are associated with stem tissues. |
| AtGenExpress_PPDB_Whole_Plant |
This collection of Gene Expression Properties are associated with whole plant body parts. |
License
We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition.
License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi
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