PromoterCAD

Developmental Genomic (AtGenExpress Developmental gene expression + PPDB promoter motif) Triplicate Data

Full triplicate expression dataset of AtGenExpress plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). MotifExpress tool allows the plloting of all triplicate data points during the design process, so the user has some idea of the experimental variation in the measurements.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_PPDB_Flowering	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant	This collection of Gene Expression Properties are associated with whole plant body parts.

License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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File Name
AtGenExpress_PPDB_Flowering			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	19.0MB
Table Data (Excel)	2013.5.10	21.4MB
RDF (Turtle)	2013.5.10	57.7MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Fruit_Seeds			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	7.3MB
Table Data (Excel)	2013.5.10	8.5MB
RDF (Turtle)	2013.5.10	20.3MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Leaf			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	11.4MB
Table Data (Excel)	2013.5.10	13.0MB
RDF (Turtle)	2013.5.10	33.4MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Root			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	6.2MB
Table Data (Excel)	2013.5.10	7.3MB
RDF (Turtle)	2013.5.10	17.3MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Seedling			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	9.3MB
Table Data (Excel)	2013.5.10	10.7MB
RDF (Turtle)	2013.5.10	27.0MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Stem			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	4.7MB
Table Data (Excel)	2013.5.10	5.7MB
RDF (Turtle)	2013.5.10	12.4MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Whole_Plant			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	4.7MB
Table Data (Excel)	2013.5.10	5.7MB
RDF (Turtle)	2013.5.10	12.4MB
		その他の形式のAPIリストを表示

Web Search

Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-... http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/179... http://www.ncbi.nlm.nih.gov/pubmed/173... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	444
Created date	Apr 24, 2013
Last update date	May 10, 2013

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Developmental Genomic (AtGenExpress Developmental gene expression + PPDB promoter motif) Triplicate Data

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