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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name AtGenExpress_ATTED_Flowering
#download_from http://linkdata.org/work/rdf1s295i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s295i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG label:Col-0_shoot_trans label:Col-0_inflo label:Col-0_flow9 label:Col-0_flow10/11 label:Col-0_flow12 label:Col-0_flow12_sepal label:Col-0_flow12_petal label:Col-0_flow12_stam label:Col-0_flow12_carp label:Col-0_flow15 label:Col-0_flow15_pedi label:Col-0_flow15_sepal label:Col-0_flow15_petal label:Col-0_flow15_stam label:Col-0_flow15_carp label:clv3-7_inflor label:lfy-12_inflor label:ap1-15_inflor label:ap2-6_inflor label:ap3-6_inflor label:ag-12_inflor label:ufo-1_inflor label:clv3-7_flow12 label:lfy-12_flow12 label:ap1-15_flow12 label:ap2-6_flow12 label:ap3-6_flow12 label:ag-12_flow12 label:ufo-1_flow12 label:Col-0_pollen label:Col-0_flower
#object_type_xsd float string string float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 -0.0795 0.1938 0.5153 0.7935 0.7023 0.6240 1.5698 0.1079 0.9111 -0.2203 -0.5538 0.4166 0.7552 -0.5677 -0.2830 -0.3807 0.3459 -0.2923 0.3577 0.1908 0.2304 0.4891 0.6253 0.8359 0.3853 0.8606 0.9971 1.3654 0.5561 0.6731 0.6507
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 -0.0060 -0.2207 -0.1664 -0.0711 0.3656 0.3689 0.0232 1.2204 0.0593 -0.0433 0.3252 -0.0334 -0.3958 -0.2832 0.1903 0.0583 -0.1748 -0.1727 -0.0858 -0.0020 -0.1070 -0.0263 0.3942 -0.1054 -0.2913 -0.0321 0.0775 0.0955 -0.0680 0.0685 -0.0430
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 -0.5368 -0.1451 0.5142 0.7879 0.8761 1.2379 1.0207 0.0411 -0.0066 0.8090 0.4341 1.5698 1.1986 0.9015 -0.6850 -0.4302 1.0856 0.2622 -0.2522 -0.2254 0.2560 0.9348 -0.4853 1.0283 0.4644 0.0905 0.0780 0.0669 0.5477 -1.0792 -0.7318
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 -0.2867 -2.0640 -1.6017 -1.2066 0.2046 -1.0009 -1.3763 2.9970 -1.4706 0.5219 -1.4443 1.5819 0.9475 3.3464 -1.3621 -2.0191 -1.5867 -1.8118 -1.8846 -1.8376 -1.5142 -1.8043 -0.2442 -1.5201 -1.3362 -0.8629 -0.6748 -0.9273 -0.8127 -1.0249 -0.7301
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 0.2345 -0.0467 0.3483 0.5133 0.2563 0.5261 -0.4826 -2.2227 -0.0029 -0.1444 1.2476 -1.3819 -1.1344 -1.8543 0.4178 0.1249 0.3862 -0.3659 -0.1250 0.2441 0.3574 0.1061 0.1111 0.5329 -0.0148 0.1932 0.2296 0.3992 0.2228 -2.3425 0.5537
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 -0.3582 -0.2151 0.2184 0.2970 0.4935 -0.2375 1.9075 0.1043 0.0641 0.0219 0.2019 -1.0640 0.2617 0.6760 0.0738 -0.5226 -0.3756 -0.6105 -0.4335 -0.3614 -0.2733 -0.4115 0.3042 -0.1101 0.0026 -0.1245 0.0319 0.6833 0.0271 -1.5761 0.2882
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 -0.2253 -0.1451 0.3927 0.8437 0.7170 1.2826 0.1500 -1.5305 0.2320 0.5820 1.0934 0.6421 -0.0772 -0.3792 0.5434 0.0782 0.1528 -0.2643 -0.1330 -0.0819 0.0044 -0.0851 0.7719 0.6936 0.7173 0.5692 0.7737 0.7208 0.8627 -4.6546 0.3885
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 0.6130 0.3966 0.2032 0.0848 -0.1141 -0.2275 -0.0453 -0.9059 0.1597 0.0644 -0.2285 0.3300 0.3670 -0.4128 -0.1082 0.4104 0.3888 0.5162 0.6236 0.3010 0.5412 0.2246 -0.2292 0.2305 0.1219 0.2334 0.1027 0.1991 -0.0354 -1.8207 0.0367
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 0.8989 0.6556 0.1740 0.1814 0.4812 -0.3159 1.0942 -0.1238 0.8679 -0.1688 -0.1390 -0.5800 -0.3773 -0.0598 0.5458 0.5618 0.4027 0.8046 0.4237 0.3483 0.5240 0.5504 0.2879 0.2057 -0.0519 0.2740 0.4314 0.1305 0.4940 1.0900 0.2288
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 -2.2491 -2.3657 -1.9298 -1.2191 -0.7908 2.8678 1.3336 -1.7604 -0.5010 0.7882 -1.0478 1.7657 3.0117 0.9858 -0.0676 -2.4653 -2.1115 -2.3574 -2.3876 -2.4448 -2.2720 -2.2957 -0.7193 -0.9976 -1.3351 -1.8490 -1.7614 -1.0349 -0.8899 -1.4344 -1.9346
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 -0.1168 -0.0810 0.3031 0.3551 0.2100 0.6907 0.6527 -0.1937 0.0980 0.0506 0.7548 -0.0297 0.3207 -0.1150 0.1990 -0.1327 0.2303 -0.4277 -0.2218 -0.0275 0.0725 0.0481 0.1710 0.4426 -0.0716 -0.1200 0.0475 0.3170 0.1079 -1.1355 0.0921
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 0.4898 0.3325 0.2277 0.2527 -0.1616 -0.3092 0.0031 -1.2485 -0.1061 -0.5689 0.7059 -1.1039 -0.7826 -1.2276 0.1647 0.0763 0.3376 0.2082 0.2960 0.3956 0.2750 0.0997 -0.3669 0.4778 -0.0649 0.0671 0.0588 0.2943 -0.0457 -0.9356 0.1353
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 -2.0207 -2.1837 -1.9155 -2.0158 -1.8032 -0.4594 -1.9261 -1.9150 -1.9330 0.5693 -1.2981 2.6265 -1.1674 0.3564 -2.0394 -1.9851 -1.8294 -1.9879 -1.7692 -1.9284 -1.6284 -2.0268 -1.9719 -0.4209 -0.8747 -1.2729 -1.4099 -0.3896 0.3942 -0.9657 -1.7478
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 0.6258 0.4390 0.2360 -0.0224 0.0220 -0.1390 -0.0617 -0.3641 0.3102 -0.1083 -0.0839 0.0890 -0.0874 -0.2418 0.1970 0.4086 0.3935 0.4067 0.4595 0.5266 0.3733 0.3893 -0.1966 0.1660 -0.1481 0.1512 0.0933 -0.0798 -0.0099 -1.5852 0.0845
ATTED:At1g01010.html -0.6440 -0.5322 -0.6520 -0.4208 0.2213 1.0735 -0.7141 -0.2969 1.2585 0.4794 0.0947 1.2504 -0.4309 -0.1544 0.5437 -0.3436 -0.4944 -0.1812 -0.2288 -0.3911 -0.6692 -0.5788 0.3283 -0.3391 0.0746 0.2030 0.8276 -0.2519 0.4793 0.9464 -0.2591
ATTED:At1g01040.html 0.3255 0.4895 0.4356 0.5160 0.1720 -0.0197 0.1809 0.0963 0.3573 0.0351 -0.5323 0.2467 0.4034 0.0365 0.0326 0.4583 0.5393 0.5034 0.6526 0.6668 0.2553 0.4337 0.1262 0.4652 0.8623 0.4506 0.6573 0.3124 0.5517 -1.4182 0.3007
ATTED:At2g26570.html -0.5634 -0.6769 -0.3112 -0.1539 -0.4423 0.2463 -0.2553 0.2134 -0.6566 -0.0290 -0.1218 0.8451 0.9778 0.8674 -0.5859 -0.6222 -0.4961 -0.7491 -0.5007 -0.4073 -0.5511 -0.3486 -0.4214 -0.3094 -0.2521 -0.2900 -0.3061 -0.1958 -0.0841 0.8562 -0.5074
ATTED:At2g26580.html -0.0692 -0.4871 -0.6183 -0.0483 -0.0305 0.4772 0.0395 -0.6838 -0.0225 0.3053 -1.3783 -0.3775 1.7414 -0.9423 -0.5754 -0.8626 -0.0817 -0.1036 -0.6223 -0.8413 -0.7310 -0.5109 -0.5277 0.2882 -0.4854 -0.5949 -0.1105 -0.2710 -0.2454 -0.6488 -0.5032
* Row count is limited to 100.