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Circadian Genomic (DIURNAL + PPDB promoter motif) Full

Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB. Gene Loci without expression data or motif data were removed from this database.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PPDB_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PPDB_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PPDB_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PPDB_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PPDB_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PPDB_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PPDB_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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File Name
DiurnalHours_PPDB_COL_LDHH
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_COL_SD
Table Data (Text)
2013.1.8
10.2MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_DD_DDHC
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LDHC
Table Data (Text)
2013.1.8
10.2MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LDHH_SM
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LDHH_ST
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LER_SD
Table Data (Text)
2013.1.8
10.2MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LIGHT5_HIF138_13
Table Data (Text)
2013.1.8
10.4MB
Table Data (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LIGHT5_HIF138_8
Table Data (Text)
2013.1.8
10.4MB
Table Data (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LIGHT5_znknOX
Table Data (Text)
2013.1.8
10.4MB
Table Data (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LL12_LDHH
Table Data (Text)
2013.1.8
10.4MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LL23_LDHH
Table Data (Text)
2013.1.8
10.4MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LLHC
Table Data (Text)
2013.1.8
10.2MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LL_LDHC
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LL_LLHC
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_lhyox_SD
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_longday
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_lux_2_LDHH
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_phyB9_SD
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_shortday
Table Data (Text)
2013.1.8
10.3MB
Table Data (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB

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