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The Plant Promoter Database (PPDB) uses word frequency analysis to identify 8 base-pair motifs in promoters. Motifs are categorized as TATA-box, Y-patch (a CT-rich region often found in plant TATA box promoters), the initiator near the transcription start site, and cis-regulatory motifs. The regulatory motifs are a group of 308 8 base-pair sequences which are used to represent regulatory sites.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352

Descriptions for each data table:
PPDB_MPSS The Plant Promoter Database (PPDB) also deposits the data of transcription start sites (TSSs) detected by the CT-MPSS method. The CT-MPSS method is a combination of cap trapper (CT), a reliable method for preparing the 5' end of full-length cDNA, and massively parallel signature sequencing (MPSS), which enables ultra-parallel sequencing in a considerably shorter time and at lower cost than conventional sequencing methods.
PPDB_reliable_LDSS The Plant Promoter Database (PPDB) uses word frequency analysis to identify 8 base-pair motifs in promoters. Motifs are categorized as TATA-box, Y-patch (a CT-rich region often found in plant TATA box promoters), the initiator near the transcription start site, and cis-regulatory motifs. The regulatory motifs are a group of 308 8 base-pair sequences which are used to represent regulatory sites.


License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/index.cgi
#file_name PPDB_reliable_LDSS
#download_from http://linkdata.org/work/rdf1s459i
#property genome version motif type start end score strand phase attributes
#object_type_xsd string string integer integer string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
1 tair9 REG 3455 3462 . + . LDSS_id " At514 " ;LDSS_seq " TAAACCGA " ;Sequence " AT1G01010.1 "
1 tair9 REG 3456 3463 . + . LDSS_id " At519 " ;LDSS_seq " CGGTTTAC " ;Sequence " AT1G01010.1 "
1 tair9 REG 3535 3542 . + . LDSS_id " At473 " ;LDSS_seq " CGGTTTAA " ;Sequence " AT1G01010.1 "
1 tair9 REG 3536 3543 . + . LDSS_id " At412 " ;LDSS_seq " CCGGTTTA " ;Sequence " AT1G01010.1 "
1 tair9 REG 3537 3544 . + . LDSS_id " At521 " ;LDSS_seq " AAACCGGA " ;Sequence " AT1G01010.1 "
1 tair9 REG 3601 3608 . + . LDSS_id " At626 " ;LDSS_seq " AAACGCTG " ;Sequence " AT1G01010.1 "
1 tair9 Y 3619 3626 . + . LDSS_id " At708 " ;LDSS_seq " CTTCCTCC " ;Sequence " AT1G01010.1 "
1 tair9 Y 3622 3629 . + . LDSS_id " At121 " ;LDSS_seq " CCTCCCTC " ;Sequence " AT1G01010.1 "
1 tair9 Y 3623 3630 . + . LDSS_id " At050 " ;LDSS_seq " CTCCCTCC " ;Sequence " AT1G01010.1 "
1 tair9 GA 3697 3704 . + . LDSS_id " At723 " ;LDSS_seq " CGAGAGAG " ;Sequence " AT1G01010.1 "
1 tair9 GA 3698 3705 . + . LDSS_id " At728 " ;LDSS_seq " GAGAGAGA " ;Sequence " AT1G01010.1 "
1 tair9 GA 3699 3706 . + . LDSS_id " At722 " ;LDSS_seq " AGAGAGAT " ;Sequence " AT1G01010.1 "
1 tair9 Y 33100 33093 . - . LDSS_id " At033 " ;LDSS_seq " TCTCTCCC " ;Sequence " AT1G01050.1 "
1 tair9 Y 33101 33094 . - . LDSS_id " At026 " ;LDSS_seq " TTCTCTCC " ;Sequence " AT1G01050.1 "
1 tair9 Y 33102 33095 . - . LDSS_id " At006 " ;LDSS_seq " TTTCTCTC " ;Sequence " AT1G01050.1 "
1 tair9 TATA 33147 33140 . - . LDSS_id " At180 " ;LDSS_seq " TATATACA " ;Sequence " AT1G01050.1 "
1 tair9 TATA 33148 33141 . - . LDSS_id " At207 " ;LDSS_seq " ATATATAC " ;Sequence " AT1G01050.1 "
1 tair9 TATA 33149 33142 . - . LDSS_id " At261 " ;LDSS_seq " CATATATA " ;Sequence " AT1G01050.1 "
1 tair9 TATA 33150 33143 . - . LDSS_id " At290 " ;LDSS_seq " TCATATAT " ;Sequence " AT1G01050.1 "
1 tair9 Y 37743 37736 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37744 37737 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37745 37738 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37746 37739 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37747 37740 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37748 37741 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37749 37742 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37750 37743 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37751 37744 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37752 37745 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37753 37746 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37754 37747 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37755 37748 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37756 37749 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37757 37750 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37758 37751 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37759 37752 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37760 37753 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37761 37754 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37762 37755 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37763 37756 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37764 37757 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37765 37758 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37766 37759 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37767 37760 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37768 37761 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37769 37762 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37770 37763 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37771 37764 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37772 37765 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37773 37766 . - . LDSS_id " At066 " ;LDSS_seq " CCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37774 37767 . - . LDSS_id " At713 " ;LDSS_seq " TCCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37775 37768 . - . LDSS_id " At085 " ;LDSS_seq " TTCCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37776 37769 . - . LDSS_id " At088 " ;LDSS_seq " CTTCCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37777 37770 . - . LDSS_id " At715 " ;LDSS_seq " TCTTCCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37797 37790 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37807 37800 . - . LDSS_id " At042 " ;LDSS_seq " CTTCTTCC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37808 37801 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37809 37802 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37810 37803 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37811 37804 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37812 37805 . - . LDSS_id " At073 " ;LDSS_seq " TTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37813 37806 . - . LDSS_id " At051 " ;LDSS_seq " CTTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37814 37807 . - . LDSS_id " At063 " ;LDSS_seq " TCTTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37815 37808 . - . LDSS_id " At075 " ;LDSS_seq " CTCTTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37816 37809 . - . LDSS_id " At083 " ;LDSS_seq " TCTCTTCT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37817 37810 . - . LDSS_id " At040 " ;LDSS_seq " TTCTCTTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 Y 37818 37811 . - . LDSS_id " At009 " ;LDSS_seq " CTTCTCTT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 REG 37913 37906 . - . LDSS_id " At623 " ;LDSS_seq " AAGGGTAT " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 REG 37950 37943 . - . LDSS_id " At478 " ;LDSS_seq " ACGTGTCG " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 REG 37951 37944 . - . LDSS_id " At366 " ;LDSS_seq " CACGTGTC " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 REG 37952 37945 . - . LDSS_id " At382 " ;LDSS_seq " ACACGTGG " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 REG 37953 37946 . - . LDSS_id " At544 " ;LDSS_seq " ACCACGTG " ;Sequence " AT1G01060.1,AT1G01060.2,AT1G01060.3,AT1G01060.4 "
1 tair9 GA 40884 40877 . - . LDSS_id " At730 " ;LDSS_seq " GAGAGATA " ;Sequence " AT1G01070.2 "
1 tair9 GA 40885 40878 . - . LDSS_id " At722 " ;LDSS_seq " AGAGAGAT " ;Sequence " AT1G01070.2 "
1 tair9 GA 40886 40879 . - . LDSS_id " At728 " ;LDSS_seq " GAGAGAGA " ;Sequence " AT1G01070.2 "
1 tair9 GA 40887 40880 . - . LDSS_id " At721 " ;LDSS_seq " AGAGAGAG " ;Sequence " AT1G01070.2 "
1 tair9 GA 40888 40881 . - . LDSS_id " At731 " ;LDSS_seq " TAGAGAGA " ;Sequence " AT1G01070.2 "
1 tair9 TATA 40891 40884 . - . LDSS_id " At153 " ;LDSS_seq " ATATAGAG " ;Sequence " AT1G01070.2 "
1 tair9 REG 40933 40926 . - . LDSS_id " At462 " ;LDSS_seq " ATAAGCCC " ;Sequence " AT1G01070.2 "
1 tair9 Y 46825 46818 . - . LDSS_id " At005 " ;LDSS_seq " TTCTTCTC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46877 46870 . - . LDSS_id " At375 " ;LDSS_seq " CCGACCCG " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46878 46871 . - . LDSS_id " At442 " ;LDSS_seq " CCCGACCC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46879 46872 . - . LDSS_id " At405 " ;LDSS_seq " ACCCGACC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46880 46873 . - . LDSS_id " At390 " ;LDSS_seq " GACCCGAC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46881 46874 . - . LDSS_id " At617 " ;LDSS_seq " TCGGGTCA " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46978 46971 . - . LDSS_id " At459 " ;LDSS_seq " AAAAGGCC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46979 46972 . - . LDSS_id " At359 " ;LDSS_seq " AAAGGCCC " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46980 46973 . - . LDSS_id " At353 " ;LDSS_seq " AAGGCCCA " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46981 46974 . - . LDSS_id " At356 " ;LDSS_seq " AGGCCCAA " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 46982 46975 . - . LDSS_id " At373 " ;LDSS_seq " GGCCCAAA " ;Sequence " AT1G01080.1,AT1G01080.2 "
1 tair9 REG 47119 47112 . - . LDSS_id " At437 " ;LDSS_seq " ATGGCCCA " ;Sequence " AT1G01080.1,AT1G01080.2 "
* Row count is limited to 100.