PromoterCAD

Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized

Normalized Expression Data of AtGenExpress plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_PPDB_Flowering_normalize	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds_normalize	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf_normalize	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root_normalize	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling_normalize	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem_normalize	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant_normalize	This collection of Gene Expression Properties are associated with whole plant body parts.

License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

評価指数

詳細情報を見たいファイルをプルダウンメニューから選択して下さい。

APIリストを表示

#LINK
#lang	en
#attribution_name	GenoCon
#attribution_url	http://promotercad.org
#file_name	AtGenExpress_PPDB_Seedling_normalize
#download_from	http://linkdata.org/work/rdf1s707i
#namespace	ATTED	http://atted.jp/data/locus/
#namespace	Gene	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	OctamerElement	http://linkdata.org/work/rdf1s329i/Octamer_elements.html#
#namespace	PLACE	http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace	PPDB	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	TAIR	http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace	genome_version	http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property	PPDB motif	motif type	motif sequence	motif position	genome_version:annotation_data.jsp	label:Col-0_cotyl	label:Col-0_hyp	label:Col-0_root7	label:Col-0_veg_leaf	label:Col-0_leaf_1-2	label:Col-0_shoot_veg	label:Col-0_seedl_green	label:Col-0_roset7	label:Col-0_seedl_GM	label:Col-0_seedl_GM5	label:Col-0_sedlGM-21	label:Col-0_sedlGM5-21
#object_type_xsd	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string
#property_context	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion
Gene:AT1G01010	OctamerElement:AtREG514 \| OctamerElement:AtREG519	REG	TCGGTTTA \| CGGTTTAC	209.5 \| 208.5	TAIR9	-0.6421	-0.6837	-0.0670	-1.4835	-1.3981	-1.1431	-0.9440	-1.0626	-0.7446	-0.7583	-1.1067	-0.8855
Gene:AT1G01010	OctamerElement:AtREG473 \| OctamerElement:AtREG412 \| OctamerElement:AtREG521	REG	TTAAACCG \| TAAACCGG \| AAACCGGA	129.5 \| 128.5 \| 127.5	TAIR9	-0.6421	-0.6837	-0.0670	-1.4835	-1.3981	-1.1431	-0.9440	-1.0626	-0.7446	-0.7583	-1.1067	-0.8855
Gene:AT1G01010	OctamerElement:AtREG626	REG	AAACGCTG	63.5	TAIR9	-0.6421	-0.6837	-0.0670	-1.4835	-1.3981	-1.1431	-0.9440	-1.0626	-0.7446	-0.7583	-1.1067	-0.8855
Gene:AT1G01060	OctamerElement:AtREG623	REG	ATACCCTT	130.5	TAIR9	0.0353	-0.1653	-2.3772	-0.3683	-0.2525	-0.7005	-0.1545	-2.0230	-0.2842	-0.4797	-1.0922	-0.7794
Gene:AT1G01060	OctamerElement:AtREG478 \| OctamerElement:AtREG366 \| OctamerElement:AtREG382 \| OctamerElement:AtREG544	REG	ACGTGTCG \| CACGTGTC \| CCACGTGT \| ACCACGTG	167.5 \| 168.5 \| 169.5 \| 170.5	TAIR9	0.0353	-0.1653	-2.3772	-0.3683	-0.2525	-0.7005	-0.1545	-2.0230	-0.2842	-0.4797	-1.0922	-0.7794
Gene:AT1G01070	OctamerElement:AtREG462	REG	GGGCTTAT	68.5	TAIR9	-0.5834	1.1120	-0.4220	-0.9336	-3.2898	0.7159	-1.5614	-3.3971	-2.5750	-1.5069	-1.8744	-1.2577
Gene:AT1G01080	OctamerElement:AtREG375 \| OctamerElement:AtREG442 \| OctamerElement:AtREG405 \| OctamerElement:AtREG390 \| OctamerElement:AtREG617	REG	CCGACCCG \| CCCGACCC \| ACCCGACC \| GACCCGAC \| TGACCCGA	43.5 \| 44.5 \| 45.5 \| 46.5 \| 47.5	TAIR9	0.1113	-1.3319	-3.1827	0.1705	0.5716	-0.4056	0.6422	0.2538	-0.3730	-0.1750	-0.7080	-0.8901
Gene:AT1G01080	OctamerElement:AtREG459 \| OctamerElement:AtREG359 \| OctamerElement:AtREG353 \| OctamerElement:AtREG356 \| OctamerElement:AtREG373	REG	GGCCTTTT \| GGGCCTTT \| TGGGCCTT \| TTGGGCCT \| TTTGGGCC	144.5 \| 145.5 \| 146.5 \| 147.5 \| 148.5	TAIR9	0.1113	-1.3319	-3.1827	0.1705	0.5716	-0.4056	0.6422	0.2538	-0.3730	-0.1750	-0.7080	-0.8901
Gene:AT1G01080	OctamerElement:AtREG437 \| OctamerElement:AtREG490 \| OctamerElement:AtREG361 \| OctamerElement:AtREG643	REG	TGGGCCAT \| ATGGGCCA \| AATGGGCC \| GAATGGGC	285.5 \| 286.5 \| 287.5 \| 288.5	TAIR9	0.1113	-1.3319	-3.1827	0.1705	0.5716	-0.4056	0.6422	0.2538	-0.3730	-0.1750	-0.7080	-0.8901
Gene:AT1G01090	OctamerElement:AtREG523	REG	GTGGGTCC	90.5	TAIR9	-0.7351	-0.3281	-0.3539	-0.1988	-0.1469	-0.2272	-0.1524	-0.2348	-0.2203	-0.4675	-0.7129	-0.6169
Gene:AT1G01100	OctamerElement:AtREG635 \| OctamerElement:AtREG403 \| OctamerElement:AtREG380	REG	GCCCATCA \| GGCCCATC \| CGGCCCAT	59.5 \| 60.5 \| 61.5	TAIR9	-1.3998	0.0768	0.3310	0.2847	-0.4281	0.4353	-0.5433	-0.2548	-0.6574	-0.5609	-0.7399	-0.6566
Gene:AT1G01100	OctamerElement:AtREG475 \| OctamerElement:AtREG358 \| OctamerElement:AtREG354 \| OctamerElement:AtREG361 \| OctamerElement:AtREG386	REG	GGGCCTAG \| TGGGCCTA \| ATGGGCCT \| AATGGGCC \| AAATGGGC	81.5 \| 82.5 \| 83.5 \| 84.5 \| 85.5	TAIR9	-1.3998	0.0768	0.3310	0.2847	-0.4281	0.4353	-0.5433	-0.2548	-0.6574	-0.5609	-0.7399	-0.6566
Gene:AT1G01100	OctamerElement:AtREG355 \| OctamerElement:AtREG352 \| OctamerElement:AtREG356 \| OctamerElement:AtREG353	REG	GCCCAATA \| GGCCCAAT \| AGGCCCAA \| AAGGCCCA	120.5 \| 121.5 \| 122.5 \| 123.5	TAIR9	-1.3998	0.0768	0.3310	0.2847	-0.4281	0.4353	-0.5433	-0.2548	-0.6574	-0.5609	-0.7399	-0.6566
Gene:AT1G01100	OctamerElement:AtREG533 \| OctamerElement:AtREG469 \| OctamerElement:AtREG421	REG	TTGGGCTC \| TTTGGGCT \| ATTTGGGC	164.5 \| 165.5 \| 166.5	TAIR9	-1.3998	0.0768	0.3310	0.2847	-0.4281	0.4353	-0.5433	-0.2548	-0.6574	-0.5609	-0.7399	-0.6566
Gene:AT1G01100	OctamerElement:AtREG632	REG	AAAGTCAA	182.5	TAIR9	-1.3998	0.0768	0.3310	0.2847	-0.4281	0.4353	-0.5433	-0.2548	-0.6574	-0.5609	-0.7399	-0.6566
Gene:AT1G01110	OctamerElement:AtREG599	REG	GGTGTCGT	164.5	TAIR9	-1.8297	-1.0930	-0.1462	-1.2397	-1.6159	-0.7769	-1.0872	-1.5034	-1.4954	-1.4079	-1.2193	-1.1475
Gene:AT1G01120	OctamerElement:AtREG620	REG	CCCATATA	168.5	TAIR9	0.2690	-0.4278	-0.9228	-1.2285	-0.1623	-2.0473	-0.9493	0.2648	0.8339	-0.3362	0.4518	0.0884
Gene:AT1G01130	OctamerElement:AtREG611 \| OctamerElement:AtREG417 \| OctamerElement:AtREG355	REG	CCAATAAG \| CCCAATAA \| GCCCAATA	83.5 \| 84.5 \| 85.5	TAIR9	-1.0332	-0.9831	-1.2421	-0.7516	-0.8123	-0.8290	-1.3427	-1.0189	-1.1204	-0.9573	-0.1104	-0.4577
Gene:AT1G01140	OctamerElement:AtREG395	REG	GCGCGTGA	52.5	TAIR9	0.2370	-2.5201	-5.8218	-1.5553	-0.3241	-2.8314	-1.3960	-1.0492	-0.1767	-0.2628	-0.0393	0.5565
Gene:AT1G01140	OctamerElement:AtREG523 \| OctamerElement:AtREG615	REG	GGACCCAC \| GGGACCCA	65.5 \| 66.5	TAIR9	0.2370	-2.5201	-5.8218	-1.5553	-0.3241	-2.8314	-1.3960	-1.0492	-0.1767	-0.2628	-0.0393	0.5565
Gene:AT1G01140	OctamerElement:AtREG448 \| OctamerElement:AtREG379 \| OctamerElement:AtREG413	REG	CGTGGCAT \| ACGTGGCA \| TACGTGGC	76.5 \| 77.5 \| 78.5	TAIR9	0.2370	-2.5201	-5.8218	-1.5553	-0.3241	-2.8314	-1.3960	-1.0492	-0.1767	-0.2628	-0.0393	0.5565
Gene:AT1G01160	OctamerElement:AtREG507 \| OctamerElement:AtREG504 \| OctamerElement:AtREG354 \| OctamerElement:AtREG353 \| OctamerElement:AtREG351 \| OctamerElement:AtREG577	REG	CCATGGGC \| CATGGGCC \| ATGGGCCT \| TGGGCCTT \| GGGCCTTA \| GGCCTTAG	215.5 \| 214.5 \| 213.5 \| 212.5 \| 211.5 \| 210.5	TAIR9	-0.9779	-0.5885	-0.1320	-0.0462	-0.9503	0.4351	-0.8283	-0.7904	-0.7613	-0.7775	-0.6033	-0.6030
Gene:AT1G01160	OctamerElement:AtREG563 \| OctamerElement:AtREG360 \| OctamerElement:AtREG358 \| OctamerElement:AtREG356 \| OctamerElement:AtREG373 \| OctamerElement:AtREG421	REG	CTTAGGCC \| TTAGGCCC \| TAGGCCCA \| AGGCCCAA \| GGCCCAAA \| GCCCAAAT	196.5 \| 195.5 \| 194.5 \| 193.5 \| 192.5 \| 191.5	TAIR9	-0.9779	-0.5885	-0.1320	-0.0462	-0.9503	0.4351	-0.8283	-0.7904	-0.7613	-0.7775	-0.6033	-0.6030
Gene:AT1G01160	OctamerElement:AtREG446 \| OctamerElement:AtREG484 \| OctamerElement:AtREG420 \| OctamerElement:AtREG373 \| OctamerElement:AtREG421	REG	ATTGGCCC \| TTGGCCCA \| TGGCCCAA \| GGCCCAAA \| GCCCAAAT	168.5 \| 167.5 \| 166.5 \| 165.5 \| 164.5	TAIR9	-0.9779	-0.5885	-0.1320	-0.0462	-0.9503	0.4351	-0.8283	-0.7904	-0.7613	-0.7775	-0.6033	-0.6030
Gene:AT1G01170	OctamerElement:AtREG386	REG	GCCCATTT	63.5	TAIR9	-0.3567	-0.5068	-4.2241	-0.6126	-0.4275	-0.7389	-1.0109	-0.5431	-0.1350	-0.1788	-0.0512	0.0119
Gene:AT1G01180	OctamerElement:AtREG470 \| OctamerElement:AtREG557 \| OctamerElement:AtREG632	REG	AGACACGT \| GACACGTA \| AAAGTCAA	164.5 \| 163.5 \| 156.5	TAIR9	-0.0235	-0.0895	-0.1326	-0.1060	-0.0186	0.0141	-0.0710	-0.0989	-0.1676	-0.0584	0.0281	-0.0311
Gene:AT1G01230	OctamerElement:AtREG424	REG	GGCCTATT	101.5	TAIR9	-0.2430	-0.3244	0.0402	-0.8619	-0.6254	-0.9977	-1.4228	-0.7000	-0.2349	-0.4530	-0.4991	-0.6244
Gene:AT1G01240	OctamerElement:AtREG590 \| OctamerElement:AtREG590	REG	AACACGTG \| CACGTGTT	133.5 \| 131.5	TAIR9	-0.9025	-1.4463	-1.5247	-2.1092	-1.2581	-2.3278	-2.5519	-1.2970	-1.0916	-1.1783	-0.9580	-0.7261
Gene:AT1G01240	OctamerElement:AtREG527 \| OctamerElement:AtREG569 \| OctamerElement:AtREG520	REG	GTGTCGTT \| TGTCGTTT \| GTCGTTTT	72.5 \| 71.5 \| 70.5	TAIR9	-0.9025	-1.4463	-1.5247	-2.1092	-1.2581	-2.3278	-2.5519	-1.2970	-1.0916	-1.1783	-0.9580	-0.7261
Gene:AT1G01260	OctamerElement:AtREG636	REG	TAAGGGGT	171.5	TAIR9	-0.7813	-0.5308	-0.0118	-0.3221	-0.5150	-0.3084	-0.2336	-0.2975	0.5250	-0.5072	-0.0168	-0.0198
Gene:AT1G01260	OctamerElement:AtREG463 \| OctamerElement:AtREG455 \| OctamerElement:AtREG412 \| OctamerElement:AtREG473	REG	GACCCGGT \| ACCCGGTT \| CCGGTTTA \| CGGTTTAA	114.5 \| 113.5 \| 111.5 \| 110.5	TAIR9	-0.7813	-0.5308	-0.0118	-0.3221	-0.5150	-0.3084	-0.2336	-0.2975	0.5250	-0.5072	-0.0168	-0.0198
Gene:AT1G01320	OctamerElement:AtREG411	REG	AGAGGCCC	144.5	TAIR9	-0.2235	-1.6748	-4.6757	0.4009	0.2669	0.0072	1.3980	0.0106	-0.5067	-0.3046	-0.4747	-0.4114
Gene:AT1G01320	OctamerElement:AtREG396 \| OctamerElement:AtREG357 \| OctamerElement:AtREG361 \| OctamerElement:AtREG354 \| OctamerElement:AtREG358 \| OctamerElement:AtREG360 \| OctamerElement:AtREG563	REG	CCCATTAA \| GCCCATTA \| GGCCCATT \| AGGCCCAT \| TAGGCCCA \| TTAGGCCC \| CTTAGGCC	159.5 \| 160.5 \| 161.5 \| 162.5 \| 163.5 \| 164.5 \| 165.5	TAIR9	-0.2235	-1.6748	-4.6757	0.4009	0.2669	0.0072	1.3980	0.0106	-0.5067	-0.3046	-0.4747	-0.4114
Gene:AT1G01370	OctamerElement:AtREG642	REG	AGGGGTAA	224.5	TAIR9	-2.0758	-1.1936	-0.6270	-0.2420	-1.6158	0.2945	-1.7055	-1.4481	-2.2192	-2.0575	-2.4918	-2.6130
Gene:AT1G01430	OctamerElement:AtREG608	REG	AAGCCACG	199.5	TAIR9	0.5670	0.3730	-0.5672	-0.5462	0.1168	-0.8015	0.2308	0.5366	0.3450	0.7667	0.3505	0.0817
Gene:AT1G01470	OctamerElement:AtREG638	REG	GACCGACT	65.5	TAIR9	0.3573	-0.7971	-0.3225	-1.9327	-1.6123	-2.4207	-2.3513	-0.6180	-0.9784	-1.0417	-1.0252	-0.7067
Gene:AT1G01470	OctamerElement:AtREG588	REG	TCACACGT	108.5	TAIR9	0.3573	-0.7971	-0.3225	-1.9327	-1.6123	-2.4207	-2.3513	-0.6180	-0.9784	-1.0417	-1.0252	-0.7067
Gene:AT1G01470	OctamerElement:AtREG557 \| OctamerElement:AtREG470	REG	GACACGTA \| AGACACGT	151.5 \| 152.5	TAIR9	0.3573	-0.7971	-0.3225	-1.9327	-1.6123	-2.4207	-2.3513	-0.6180	-0.9784	-1.0417	-1.0252	-0.7067
Gene:AT1G01480	OctamerElement:AtREG591	REG	CCCATGGG	74.5	TAIR9	-2.9173	-2.8951	-1.7073	-3.0212	-2.6349	-2.9361	-3.0901	-3.0547	-2.7607	-2.9473	-2.7447	-2.7363
Gene:AT1G01490	OctamerElement:AtREG395	REG	TCACGCGC	209.5	TAIR9	-0.1370	0.0468	-1.2434	-1.0854	-0.6061	-0.9698	-1.0445	-0.8842	0.2862	0.2763	0.3817	0.3356
Gene:AT1G01490	OctamerElement:AtREG486	REG	CACGCGCC	222.5	TAIR9	-0.1370	0.0468	-1.2434	-1.0854	-0.6061	-0.9698	-1.0445	-0.8842	0.2862	0.2763	0.3817	0.3356
Gene:AT1G01500	OctamerElement:AtREG426 \| OctamerElement:AtREG378 \| OctamerElement:AtREG372 \| OctamerElement:AtREG386 \| OctamerElement:AtREG443 \| OctamerElement:AtREG610	REG	TAAGCCCA \| AAGCCCAT \| AGCCCATT \| GCCCATTT \| CCCATTTA \| TTTAACGG	221.5 \| 220.5 \| 219.5 \| 218.5 \| 217.5 \| 213.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG437 \| OctamerElement:AtREG458 \| OctamerElement:AtREG384	REG	ATGGCCCA \| TGGCCCAG \| GGCCCAGT	191.5 \| 190.5 \| 189.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG589	REG	AAAAAGCC	156.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG588 \| OctamerElement:AtREG460 \| OctamerElement:AtREG541	REG	TCACACGT \| CACACGTG \| CACGTGCG	137.5 \| 136.5 \| 134.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG567 \| OctamerElement:AtREG602	REG	AGGGTATT \| GGGTATTT	110.5 \| 109.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG592	REG	TTTGACCC	80.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01500	OctamerElement:AtREG646	REG	CGTAATTA	69.5	TAIR9	-1.6124	-2.2992	-2.3602	-2.0727	-1.5267	-2.3141	-1.8779	-1.0196	-1.4501	-1.6824	-1.7544	-1.7743
Gene:AT1G01510	OctamerElement:AtREG540 \| OctamerElement:AtREG537 \| OctamerElement:AtREG439 \| OctamerElement:AtREG415 \| OctamerElement:AtREG565	REG	ACGGCGTC \| GGCGTCGT \| GCGTCGTT \| CGTCGTTT \| GTCGTTTA	208.5 \| 206.5 \| 205.5 \| 204.5 \| 203.5	TAIR9	-1.0591	0.0617	0.2258	0.0471	-0.4475	0.2511	-0.4211	-0.5303	-0.5326	-0.5951	-0.4311	-0.4156
Gene:AT1G01510	OctamerElement:AtREG578	REG	GATGACGT	179.5	TAIR9	-1.0591	0.0617	0.2258	0.0471	-0.4475	0.2511	-0.4211	-0.5303	-0.5326	-0.5951	-0.4311	-0.4156
Gene:AT1G01510	OctamerElement:AtREG529 \| OctamerElement:AtREG373 \| OctamerElement:AtREG392 \| OctamerElement:AtREG400	REG	TTTTGGGC \| TTTGGGCC \| TTGGGCCC \| TGGGCCCT	112.5 \| 111.5 \| 110.5 \| 109.5	TAIR9	-1.0591	0.0617	0.2258	0.0471	-0.4475	0.2511	-0.4211	-0.5303	-0.5326	-0.5951	-0.4311	-0.4156
Gene:AT1G01540	OctamerElement:AtREG630	REG	CGACATCG	155.5	TAIR9	0.1567	-0.5369	-0.4178	-0.2395	0.4129	-0.5036	-0.0361	-0.2173	0.1678	-0.2298	0.4878	-0.1097
Gene:AT1G01550	OctamerElement:AtREG632	REG	TTGACTTT	194.5	TAIR9	-0.2646	-0.3863	0.0706	-0.5840	-0.5443	-0.7083	-0.9158	-0.8083	0.2523	-0.1473	0.2532	0.2379
Gene:AT1G01560	OctamerElement:AtREG507	REG	CCATGGGC	203.5	TAIR9	-0.4434	-2.3805	-2.7079	-3.1097	-2.4725	-3.4653	-2.9694	-3.0251	-0.5974	-1.6116	-1.2585	-0.2925
Gene:AT1G01620	OctamerElement:AtREG553 \| OctamerElement:AtREG554	REG	CAACGGTC \| TCCAACGG	444.5 \| 446.5	TAIR9	-0.5867	0.4837	0.7209	-0.2544	-0.4311	-0.1930	-0.9953	-0.2693	-0.0113	-0.2674	0.4847	0.3130
Gene:AT1G01620	OctamerElement:AtREG475	REG	CTAGGCCC	525.5	TAIR9	-0.5867	0.4837	0.7209	-0.2544	-0.4311	-0.1930	-0.9953	-0.2693	-0.0113	-0.2674	0.4847	0.3130
Gene:AT1G01630	OctamerElement:AtREG440 \| OctamerElement:AtREG419 \| OctamerElement:AtREG485	REG	CTGACGTG \| TGACGTGG \| TGGGCTCA	208.5 \| 207.5 \| 202.5	TAIR9	-0.5180	-1.4083	-1.1217	-0.9191	-1.0255	-1.2199	-1.1293	-0.8309	-1.3228	-0.8418	-1.4657	-1.6223
Gene:AT1G01630	OctamerElement:AtREG531	REG	AAAACGGC	187.5	TAIR9	-0.5180	-1.4083	-1.1217	-0.9191	-1.0255	-1.2199	-1.1293	-0.8309	-1.3228	-0.8418	-1.4657	-1.6223
Gene:AT1G01630	OctamerElement:AtREG533 \| OctamerElement:AtREG402 \| OctamerElement:AtREG355 \| OctamerElement:AtREG624	REG	GAGCCCAA \| AGCCCAAT \| GCCCAATA \| CCCAATAG	104.5 \| 103.5 \| 102.5 \| 101.5	TAIR9	-0.5180	-1.4083	-1.1217	-0.9191	-1.0255	-1.2199	-1.1293	-0.8309	-1.3228	-0.8418	-1.4657	-1.6223
Gene:AT1G01630	OctamerElement:AtREG425 \| OctamerElement:AtREG351 \| OctamerElement:AtREG353 \| OctamerElement:AtREG356 \| OctamerElement:AtREG352 \| OctamerElement:AtREG355	REG	ATAAGGCC \| TAAGGCCC \| AAGGCCCA \| AGGCCCAA \| GGCCCAAT \| GCCCAATA	87.5 \| 86.5 \| 85.5 \| 84.5 \| 83.5 \| 82.5	TAIR9	-0.5180	-1.4083	-1.1217	-0.9191	-1.0255	-1.2199	-1.1293	-0.8309	-1.3228	-0.8418	-1.4657	-1.6223
Gene:AT1G01650	OctamerElement:AtREG564 \| OctamerElement:AtREG626	REG	GCGTTTTA \| CAGCGTTT	1082.5 \| 1084.5	TAIR9	-0.9059	-1.5590	-0.3738	-0.7908	-1.0856	-0.9455	-1.0712	-1.0875	-0.6641	-0.7865	-0.6215	-0.3328
Gene:AT1G01650	OctamerElement:AtREG632	REG	AAAGTCAA	1095.5	TAIR9	-0.9059	-1.5590	-0.3738	-0.7908	-1.0856	-0.9455	-1.0712	-1.0875	-0.6641	-0.7865	-0.6215	-0.3328
Gene:AT1G01650	OctamerElement:AtREG486	REG	CACGCGCC	1129.5	TAIR9	-0.9059	-1.5590	-0.3738	-0.7908	-1.0856	-0.9455	-1.0712	-1.0875	-0.6641	-0.7865	-0.6215	-0.3328
Gene:AT1G01650	OctamerElement:AtREG536	REG	ACACGCGT	1139.5	TAIR9	-0.9059	-1.5590	-0.3738	-0.7908	-1.0856	-0.9455	-1.0712	-1.0875	-0.6641	-0.7865	-0.6215	-0.3328
Gene:AT1G01650	OctamerElement:AtREG449 \| OctamerElement:AtREG420 \| OctamerElement:AtREG484	REG	GGCCCAAC \| TGGCCCAA \| TTGGCCCA	182.5 \| 183.5 \| 184.5	TAIR9	-0.9059	-1.5590	-0.3738	-0.7908	-1.0856	-0.9455	-1.0712	-1.0875	-0.6641	-0.7865	-0.6215	-0.3328
Gene:AT1G01670	OctamerElement:AtREG428 \| OctamerElement:AtREG478 \| OctamerElement:AtREG481 \| OctamerElement:AtREG517 \| OctamerElement:AtREG466 \| OctamerElement:AtREG489	REG	CGTGTCGT \| ACGTGTCG \| GACGTGTC \| TGACGTGT \| GTGACGTG \| CGTGACGT	62.5 \| 63.5 \| 64.5 \| 65.5 \| 66.5 \| 67.5	TAIR9	-0.1213	-0.1451	0.1728	-0.1896	0.0199	-0.0810	-0.3035	-0.3119	-0.3881	-0.2629	0.0335	-0.1722
Gene:AT1G01690	OctamerElement:AtREG417	REG	TTATTGGG	188.5	TAIR9	-0.1435	-0.5193	-0.2974	-0.3882	-0.1434	-0.1807	-0.2951	-0.2287	-0.4209	-0.3389	-0.3604	-0.2776
Gene:AT1G01690	OctamerElement:AtREG364 \| OctamerElement:AtREG490 \| OctamerElement:AtREG437	REG	TATGGGCC \| ATGGGCCA \| TGGGCCAT	169.5 \| 168.5 \| 167.5	TAIR9	-0.1435	-0.5193	-0.2974	-0.3882	-0.1434	-0.1807	-0.2951	-0.2287	-0.4209	-0.3389	-0.3604	-0.2776
Gene:AT1G01690	OctamerElement:AtREG558 \| OctamerElement:AtREG357 \| OctamerElement:AtREG372 \| OctamerElement:AtREG378 \| OctamerElement:AtREG376 \| OctamerElement:AtREG365 \| OctamerElement:AtREG601 \| OctamerElement:AtREG394 \| OctamerElement:AtREG364 \| OctamerElement:AtREG354 \| OctamerElement:AtREG447 \| OctamerElement:AtREG411	REG	CTAATGGG \| TAATGGGC \| AATGGGCT \| ATGGGCTT \| TGGGCTTT \| GGGCTTTA \| GGCTTTAT \| TTATGGGC \| TATGGGCC \| ATGGGCCT \| TGGGCCTC \| GGGCCTCT	149.5 \| 148.5 \| 147.5 \| 146.5 \| 145.5 \| 144.5 \| 143.5 \| 139.5 \| 138.5 \| 137.5 \| 136.5 \| 135.5	TAIR9	-0.1435	-0.5193	-0.2974	-0.3882	-0.1434	-0.1807	-0.2951	-0.2287	-0.4209	-0.3389	-0.3604	-0.2776
Gene:AT1G01710	OctamerElement:AtREG504 \| OctamerElement:AtREG490 \| OctamerElement:AtREG437	REG	CATGGGCC \| ATGGGCCA \| TGGGCCAT	277.5 \| 276.5 \| 275.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG416 \| OctamerElement:AtREG416 \| OctamerElement:AtREG545	REG	TTAAGGCC \| GGCCTTAA \| TTAAAGCC	239.5 \| 235.5 \| 231.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG396 \| OctamerElement:AtREG357 \| OctamerElement:AtREG361 \| OctamerElement:AtREG354 \| OctamerElement:AtREG353 \| OctamerElement:AtREG398	REG	TTAATGGG \| TAATGGGC \| AATGGGCC \| ATGGGCCT \| TGGGCCTT \| GGGCCTTG	222.5 \| 221.5 \| 220.5 \| 219.5 \| 218.5 \| 217.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG590 \| OctamerElement:AtREG628	REG	AACACGTG \| ACACGTGA	93.5 \| 92.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG575	REG	CGAACCGA	71.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG513	REG	GTCCACGT	63.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01710	OctamerElement:AtREG598 \| OctamerElement:AtREG412 \| OctamerElement:AtREG521	REG	ATAAACCG \| TAAACCGG \| AAACCGGA	47.5 \| 46.5 \| 45.5	TAIR9	-0.1173	-0.0288	-0.5797	-0.2811	-0.0625	-0.2711	-0.1992	-0.1205	-0.3485	-0.3443	-0.3002	-0.3857
Gene:AT1G01720	OctamerElement:AtREG644	REG	ACCGGAAA	280.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG451	REG	GGTTCGGT	242.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG576 \| OctamerElement:AtREG569	REG	GAAACGAC \| AAACGACA	183.5 \| 182.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG471 \| OctamerElement:AtREG371 \| OctamerElement:AtREG388 \| OctamerElement:AtREG419 \| OctamerElement:AtREG440 \| OctamerElement:AtREG515	REG	TCGCCACG \| CGCCACGT \| GCCACGTC \| CCACGTCA \| CACGTCAG \| ACGTCAGC	146.5 \| 145.5 \| 144.5 \| 143.5 \| 142.5 \| 141.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG472	REG	ACGTGTCC	113.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG464 \| OctamerElement:AtREG382 \| OctamerElement:AtREG460	REG	CCCACGTG \| CCACGTGT \| CACGTGTG	90.5 \| 89.5 \| 88.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01720	OctamerElement:AtREG478 \| OctamerElement:AtREG366 \| OctamerElement:AtREG366 \| OctamerElement:AtREG472	REG	CGACACGT \| GACACGTG \| CACGTGTC \| ACGTGTCC	50.5 \| 49.5 \| 47.5 \| 46.5	TAIR9	-2.7591	-2.5072	-1.8860	-2.9195	-2.6544	-3.3400	-3.1862	-2.5419	-1.2895	-1.5544	-1.6360	-0.8949
Gene:AT1G01730	OctamerElement:AtREG520 \| OctamerElement:AtREG569 \| OctamerElement:AtREG527	REG	GTCGTTTT \| AAACGACA \| AACGACAC	169.5 \| 168.5 \| 167.5	TAIR9	-0.8918	-0.0904	-0.1965	-0.5543	-1.8735	-0.3612	-1.2715	-1.0539	-0.5156	-0.7948	-0.6002	-0.4538

※ 100行まで表示しています。

オープンデータを加工して共有しよう

テーブルデータの変換と公開をサポートするサイト

データセットの情報

Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized