AtGenExpress_PPDB_Flowering_median | This collection of Gene Expression Properties are associated with flowering tissues. |
AtGenExpress_PPDB_Fruit_Seeds_median |
This collection of Gene Expression Properties are associated with fruit and seed tissues. |
AtGenExpress_PPDB_Leaf_median |
This collection of Gene Expression Properties are associated with leaf tissues. |
AtGenExpress_PPDB_Root_median |
This collection of Gene Expression Properties are associated with root tissues. |
AtGenExpress_PPDB_Seedling_median |
This collection of Gene Expression Properties are associated with seedling tissues. |
AtGenExpress_PPDB_Stem_median |
This collection of Gene Expression Properties are associated with stem tissues. |
AtGenExpress_PPDB_Whole_Plant_median |
This collection of Gene Expression Properties are associated with whole plant body parts. |
Octamer_elements | A list of the 8mer sequence motifs from PPDB. This table lists each 8mer along with the appropriate median position from the TSS, calculated from all 8mers. |
We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition.
License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi
value
#LINK | |||||||||||||||||||||
#lang | en | ||||||||||||||||||||
#attribution_name | GenoCon | ||||||||||||||||||||
#attribution_url | http://promotercad.org | ||||||||||||||||||||
#file_name | AtGenExpress_PPDB_Leaf_median | ||||||||||||||||||||
#download_from | http://linkdata.org/work/rdf1s705i | ||||||||||||||||||||
#namespace | ATTED | http://atted.jp/data/locus/ | |||||||||||||||||||
#namespace | Gene | http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene= | |||||||||||||||||||
#namespace | OctamerElement | http://linkdata.org/work/rdf1s329i/Octamer_elements.html# | |||||||||||||||||||
#namespace | PLACE | http://www.dna.affrc.go.jp/sigscan/disp.cgi? | |||||||||||||||||||
#namespace | PPDB | http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene= | |||||||||||||||||||
#namespace | TAIR | http://arabidopsis.org/servlets/TairObject?type=locus&name= | |||||||||||||||||||
#namespace | genome_version | http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/ | |||||||||||||||||||
#property | PPDB motif | motif type | motif sequence | motif position | genome_version:annotation_data.jsp | label:Col-0_roset4_1l | label:gl1T_roset4_1l | label:Col-0_roset2 | label:Col-0_roset4 | label:Col-0_roset6 | label:Col-0_roset8 | label:Col-0_roset10 | label:Col-0_roset12 | label:gl1T_rosett12 | label:Col-0_lf7_prox | label:Col-0_lf7_distal | label:Col-0_senescent | label:Col-0_cauline | label:Col-0_roset14 | label:Col-0_roset21 | label:Col-0_leaf |
#object_type_xsd | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string | string |
#property_context | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion | Assertion |
Gene:AT1G01010 | OctamerElement:AtREG514 | OctamerElement:AtREG519 | REG | TCGGTTTA | CGGTTTAC | 209.5 | 208.5 | TAIR9 | -0.6603 | -0.3519 | -0.0295 | -0.0450 | -0.0980 | -0.3397 | -0.4620 | -0.6935 | -0.4905 | -0.2170 | -0.0540 | 0.7113 | 0.9990 | -0.6286 | -0.4381 | -0.3836 |
Gene:AT1G01010 | OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 | REG | TTAAACCG | TAAACCGG | AAACCGGA | 129.5 | 128.5 | 127.5 | TAIR9 | -0.6603 | -0.3519 | -0.0295 | -0.0450 | -0.0980 | -0.3397 | -0.4620 | -0.6935 | -0.4905 | -0.2170 | -0.0540 | 0.7113 | 0.9990 | -0.6286 | -0.4381 | -0.3836 |
Gene:AT1G01010 | OctamerElement:AtREG626 | REG | AAACGCTG | 63.5 | TAIR9 | -0.6603 | -0.3519 | -0.0295 | -0.0450 | -0.0980 | -0.3397 | -0.4620 | -0.6935 | -0.4905 | -0.2170 | -0.0540 | 0.7113 | 0.9990 | -0.6286 | -0.4381 | -0.3836 |
Gene:AT1G01060 | OctamerElement:AtREG623 | REG | ATACCCTT | 130.5 | TAIR9 | 0.3669 | -0.6018 | 0.6610 | 0.1225 | 0.0218 | -0.8524 | -0.8560 | -1.2300 | 0.1401 | -0.3682 | -0.1890 | -0.0197 | 2.0039 | -1.5638 | -1.3019 | -1.8901 |
Gene:AT1G01060 | OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 | REG | ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG | 167.5 | 168.5 | 169.5 | 170.5 | TAIR9 | 0.3669 | -0.6018 | 0.6610 | 0.1225 | 0.0218 | -0.8524 | -0.8560 | -1.2300 | 0.1401 | -0.3682 | -0.1890 | -0.0197 | 2.0039 | -1.5638 | -1.3019 | -1.8901 |
Gene:AT1G01070 | OctamerElement:AtREG462 | REG | GGGCTTAT | 68.5 | TAIR9 | -1.6538 | -1.4212 | 1.1031 | 0.8644 | 0.3511 | -0.4605 | -1.0379 | -1.4753 | -1.2116 | 0.1313 | 0.1519 | 1.7631 | 1.1675 | -1.2379 | -1.2023 | -0.7377 |
Gene:AT1G01080 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 | REG | CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA | 43.5 | 44.5 | 45.5 | 46.5 | 47.5 | TAIR9 | 1.8317 | 1.8402 | 0.6197 | 0.9943 | 1.1690 | 1.4391 | 1.5797 | 1.6978 | 1.5126 | 1.4456 | 1.3394 | -0.8632 | 0.3198 | 1.4529 | 1.2258 | 1.3354 |
Gene:AT1G01080 | OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 | REG | GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC | 144.5 | 145.5 | 146.5 | 147.5 | 148.5 | TAIR9 | 1.8317 | 1.8402 | 0.6197 | 0.9943 | 1.1690 | 1.4391 | 1.5797 | 1.6978 | 1.5126 | 1.4456 | 1.3394 | -0.8632 | 0.3198 | 1.4529 | 1.2258 | 1.3354 |
Gene:AT1G01080 | OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 | REG | TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC | 285.5 | 286.5 | 287.5 | 288.5 | TAIR9 | 1.8317 | 1.8402 | 0.6197 | 0.9943 | 1.1690 | 1.4391 | 1.5797 | 1.6978 | 1.5126 | 1.4456 | 1.3394 | -0.8632 | 0.3198 | 1.4529 | 1.2258 | 1.3354 |
Gene:AT1G01090 | OctamerElement:AtREG523 | REG | GTGGGTCC | 90.5 | TAIR9 | 0.2561 | 0.0145 | -0.6122 | -0.3769 | -0.2690 | -0.0579 | -0.0070 | -0.0114 | -0.0324 | -0.1124 | -0.2515 | -0.6731 | -0.3363 | 0.3362 | 0.3107 | 0.1609 |
Gene:AT1G01100 | OctamerElement:AtREG635 | OctamerElement:AtREG403 | OctamerElement:AtREG380 | REG | GCCCATCA | GGCCCATC | CGGCCCAT | 59.5 | 60.5 | 61.5 | TAIR9 | 0.1455 | -0.0631 | -0.6700 | -0.8563 | -0.9247 | -0.3999 | -0.1701 | 0.2419 | 0.1430 | -0.6502 | -0.8517 | -1.4507 | -1.4869 | 0.2763 | 0.4746 | -0.0910 |
Gene:AT1G01100 | OctamerElement:AtREG475 | OctamerElement:AtREG358 | OctamerElement:AtREG354 | OctamerElement:AtREG361 | OctamerElement:AtREG386 | REG | GGGCCTAG | TGGGCCTA | ATGGGCCT | AATGGGCC | AAATGGGC | 81.5 | 82.5 | 83.5 | 84.5 | 85.5 | TAIR9 | 0.1455 | -0.0631 | -0.6700 | -0.8563 | -0.9247 | -0.3999 | -0.1701 | 0.2419 | 0.1430 | -0.6502 | -0.8517 | -1.4507 | -1.4869 | 0.2763 | 0.4746 | -0.0910 |
Gene:AT1G01100 | OctamerElement:AtREG355 | OctamerElement:AtREG352 | OctamerElement:AtREG356 | OctamerElement:AtREG353 | REG | GCCCAATA | GGCCCAAT | AGGCCCAA | AAGGCCCA | 120.5 | 121.5 | 122.5 | 123.5 | TAIR9 | 0.1455 | -0.0631 | -0.6700 | -0.8563 | -0.9247 | -0.3999 | -0.1701 | 0.2419 | 0.1430 | -0.6502 | -0.8517 | -1.4507 | -1.4869 | 0.2763 | 0.4746 | -0.0910 |
Gene:AT1G01100 | OctamerElement:AtREG533 | OctamerElement:AtREG469 | OctamerElement:AtREG421 | REG | TTGGGCTC | TTTGGGCT | ATTTGGGC | 164.5 | 165.5 | 166.5 | TAIR9 | 0.1455 | -0.0631 | -0.6700 | -0.8563 | -0.9247 | -0.3999 | -0.1701 | 0.2419 | 0.1430 | -0.6502 | -0.8517 | -1.4507 | -1.4869 | 0.2763 | 0.4746 | -0.0910 |
Gene:AT1G01100 | OctamerElement:AtREG632 | REG | AAAGTCAA | 182.5 | TAIR9 | 0.1455 | -0.0631 | -0.6700 | -0.8563 | -0.9247 | -0.3999 | -0.1701 | 0.2419 | 0.1430 | -0.6502 | -0.8517 | -1.4507 | -1.4869 | 0.2763 | 0.4746 | -0.0910 |
Gene:AT1G01110 | OctamerElement:AtREG599 | REG | GGTGTCGT | 164.5 | TAIR9 | -0.7067 | -0.9668 | -0.9718 | -0.6111 | -0.5318 | -0.6099 | -0.6213 | -0.6558 | -0.8226 | -0.6893 | -0.7572 | -0.9795 | -0.8912 | -0.5595 | -0.3001 | -0.6390 |
Gene:AT1G01120 | OctamerElement:AtREG620 | REG | CCCATATA | 168.5 | TAIR9 | 0.1182 | 0.4033 | 0.7112 | 1.1184 | 1.0185 | 0.9595 | 0.5587 | 0.0168 | -0.4356 | 0.8925 | 1.2354 | -3.5583 | 0.2433 | -0.8691 | -0.7556 | 0.7368 |
Gene:AT1G01130 | OctamerElement:AtREG611 | OctamerElement:AtREG417 | OctamerElement:AtREG355 | REG | CCAATAAG | CCCAATAA | GCCCAATA | 83.5 | 84.5 | 85.5 | TAIR9 | -0.1786 | -0.2762 | 0.0378 | -0.1085 | -0.0468 | 0.0659 | -0.1721 | -0.1404 | -0.6369 | 0.1728 | 0.0469 | -0.8502 | -0.7909 | -0.4364 | -0.3547 | -0.2775 |
Gene:AT1G01140 | OctamerElement:AtREG395 | REG | GCGCGTGA | 52.5 | TAIR9 | -0.2205 | 0.2652 | 1.5778 | 1.5102 | 0.8636 | 0.7225 | 0.4331 | -0.0070 | -0.0764 | 0.9383 | 1.4469 | 1.8124 | 1.8774 | -0.5151 | -0.8740 | 0.1004 |
Gene:AT1G01140 | OctamerElement:AtREG523 | OctamerElement:AtREG615 | REG | GGACCCAC | GGGACCCA | 65.5 | 66.5 | TAIR9 | -0.2205 | 0.2652 | 1.5778 | 1.5102 | 0.8636 | 0.7225 | 0.4331 | -0.0070 | -0.0764 | 0.9383 | 1.4469 | 1.8124 | 1.8774 | -0.5151 | -0.8740 | 0.1004 |
Gene:AT1G01140 | OctamerElement:AtREG448 | OctamerElement:AtREG379 | OctamerElement:AtREG413 | REG | CGTGGCAT | ACGTGGCA | TACGTGGC | 76.5 | 77.5 | 78.5 | TAIR9 | -0.2205 | 0.2652 | 1.5778 | 1.5102 | 0.8636 | 0.7225 | 0.4331 | -0.0070 | -0.0764 | 0.9383 | 1.4469 | 1.8124 | 1.8774 | -0.5151 | -0.8740 | 0.1004 |
Gene:AT1G01160 | OctamerElement:AtREG507 | OctamerElement:AtREG504 | OctamerElement:AtREG354 | OctamerElement:AtREG353 | OctamerElement:AtREG351 | OctamerElement:AtREG577 | REG | CCATGGGC | CATGGGCC | ATGGGCCT | TGGGCCTT | GGGCCTTA | GGCCTTAG | 215.5 | 214.5 | 213.5 | 212.5 | 211.5 | 210.5 | TAIR9 | -0.3375 | -0.6572 | -0.4872 | -0.6420 | -0.9304 | -0.8979 | -0.8423 | -0.3490 | -0.4157 | -1.1966 | -1.1082 | 0.3304 | -0.1468 | -0.2768 | 0.0119 | -0.3504 |
Gene:AT1G01160 | OctamerElement:AtREG563 | OctamerElement:AtREG360 | OctamerElement:AtREG358 | OctamerElement:AtREG356 | OctamerElement:AtREG373 | OctamerElement:AtREG421 | REG | CTTAGGCC | TTAGGCCC | TAGGCCCA | AGGCCCAA | GGCCCAAA | GCCCAAAT | 196.5 | 195.5 | 194.5 | 193.5 | 192.5 | 191.5 | TAIR9 | -0.3375 | -0.6572 | -0.4872 | -0.6420 | -0.9304 | -0.8979 | -0.8423 | -0.3490 | -0.4157 | -1.1966 | -1.1082 | 0.3304 | -0.1468 | -0.2768 | 0.0119 | -0.3504 |
Gene:AT1G01160 | OctamerElement:AtREG446 | OctamerElement:AtREG484 | OctamerElement:AtREG420 | OctamerElement:AtREG373 | OctamerElement:AtREG421 | REG | ATTGGCCC | TTGGCCCA | TGGCCCAA | GGCCCAAA | GCCCAAAT | 168.5 | 167.5 | 166.5 | 165.5 | 164.5 | TAIR9 | -0.3375 | -0.6572 | -0.4872 | -0.6420 | -0.9304 | -0.8979 | -0.8423 | -0.3490 | -0.4157 | -1.1966 | -1.1082 | 0.3304 | -0.1468 | -0.2768 | 0.0119 | -0.3504 |
Gene:AT1G01170 | OctamerElement:AtREG386 | REG | GCCCATTT | 63.5 | TAIR9 | 0.4652 | 0.6101 | 0.8603 | 0.7552 | 0.5004 | 0.5054 | 0.5383 | 0.6579 | 0.7574 | 0.6300 | 0.6293 | -0.7020 | 0.4348 | 0.4074 | 0.3202 | 0.6977 |
Gene:AT1G01180 | OctamerElement:AtREG470 | OctamerElement:AtREG557 | OctamerElement:AtREG632 | REG | AGACACGT | GACACGTA | AAAGTCAA | 164.5 | 163.5 | 156.5 | TAIR9 | 0.0667 | -0.0050 | 0.0476 | 0.0910 | 0.0507 | -0.0001 | 0.1684 | -0.0427 | -0.1464 | 0.0549 | -0.0920 | 0.1563 | 0.0253 | 0.0909 | 0.0401 | -0.0848 |
Gene:AT1G01230 | OctamerElement:AtREG424 | REG | GGCCTATT | 101.5 | TAIR9 | -0.3332 | -0.0275 | 0.1293 | 0.2672 | 0.1050 | 0.1624 | -0.0898 | -0.1317 | -0.1399 | 0.2839 | 0.3575 | 0.3606 | 0.2540 | -0.4110 | -0.3620 | 0.2616 |
Gene:AT1G01240 | OctamerElement:AtREG590 | OctamerElement:AtREG590 | REG | AACACGTG | CACGTGTT | 133.5 | 131.5 | TAIR9 | -0.1570 | -0.0055 | 0.6724 | 0.3401 | -0.1480 | -0.3828 | -0.4680 | -0.6379 | -0.1788 | -0.1750 | 0.2392 | 2.1686 | 1.2874 | 0.2130 | 0.1464 | 0.8062 |
Gene:AT1G01240 | OctamerElement:AtREG527 | OctamerElement:AtREG569 | OctamerElement:AtREG520 | REG | GTGTCGTT | TGTCGTTT | GTCGTTTT | 72.5 | 71.5 | 70.5 | TAIR9 | -0.1570 | -0.0055 | 0.6724 | 0.3401 | -0.1480 | -0.3828 | -0.4680 | -0.6379 | -0.1788 | -0.1750 | 0.2392 | 2.1686 | 1.2874 | 0.2130 | 0.1464 | 0.8062 |
Gene:AT1G01260 | OctamerElement:AtREG636 | REG | TAAGGGGT | 171.5 | TAIR9 | -0.4595 | -0.3805 | -0.1220 | -0.1301 | -0.3022 | -0.2151 | -0.0796 | -0.2212 | -0.2640 | -0.0372 | 0.3865 | 0.4324 | -0.0883 | 0.0622 | 0.0747 | -0.4638 |
Gene:AT1G01260 | OctamerElement:AtREG463 | OctamerElement:AtREG455 | OctamerElement:AtREG412 | OctamerElement:AtREG473 | REG | GACCCGGT | ACCCGGTT | CCGGTTTA | CGGTTTAA | 114.5 | 113.5 | 111.5 | 110.5 | TAIR9 | -0.4595 | -0.3805 | -0.1220 | -0.1301 | -0.3022 | -0.2151 | -0.0796 | -0.2212 | -0.2640 | -0.0372 | 0.3865 | 0.4324 | -0.0883 | 0.0622 | 0.0747 | -0.4638 |
Gene:AT1G01320 | OctamerElement:AtREG411 | REG | AGAGGCCC | 144.5 | TAIR9 | 1.5006 | 1.3148 | 0.7484 | 0.6792 | 0.7028 | 0.8303 | 1.0177 | 1.1178 | 1.5831 | 0.8354 | 0.6728 | 1.5124 | 1.2457 | 1.2498 | 1.1778 | 0.9106 |
Gene:AT1G01320 | OctamerElement:AtREG396 | OctamerElement:AtREG357 | OctamerElement:AtREG361 | OctamerElement:AtREG354 | OctamerElement:AtREG358 | OctamerElement:AtREG360 | OctamerElement:AtREG563 | REG | CCCATTAA | GCCCATTA | GGCCCATT | AGGCCCAT | TAGGCCCA | TTAGGCCC | CTTAGGCC | 159.5 | 160.5 | 161.5 | 162.5 | 163.5 | 164.5 | 165.5 | TAIR9 | 1.5006 | 1.3148 | 0.7484 | 0.6792 | 0.7028 | 0.8303 | 1.0177 | 1.1178 | 1.5831 | 0.8354 | 0.6728 | 1.5124 | 1.2457 | 1.2498 | 1.1778 | 0.9106 |
Gene:AT1G01370 | OctamerElement:AtREG642 | REG | AGGGGTAA | 224.5 | TAIR9 | -0.1236 | -0.2235 | -1.2718 | -1.2264 | -1.0619 | -0.6278 | -0.2702 | -0.0785 | -0.0691 | -0.8205 | -0.8723 | -1.6295 | -1.5277 | 0.3937 | 0.4919 | -0.3695 |
Gene:AT1G01430 | OctamerElement:AtREG608 | REG | AAGCCACG | 199.5 | TAIR9 | 0.6029 | 0.6349 | 0.6720 | 0.3751 | 0.3192 | 0.1800 | 0.0406 | -0.0169 | 0.1727 | 0.1973 | 0.1262 | -1.0155 | 0.1567 | 0.3475 | 0.2015 | 1.1285 |
Gene:AT1G01470 | OctamerElement:AtREG638 | REG | GACCGACT | 65.5 | TAIR9 | -0.1324 | 0.6446 | 2.3908 | 2.2909 | 2.0305 | 1.7483 | 1.1086 | 0.6323 | 0.3902 | 1.9411 | 2.2803 | 1.8184 | 1.7158 | -0.4063 | -0.2786 | 0.9316 |
Gene:AT1G01470 | OctamerElement:AtREG588 | REG | TCACACGT | 108.5 | TAIR9 | -0.1324 | 0.6446 | 2.3908 | 2.2909 | 2.0305 | 1.7483 | 1.1086 | 0.6323 | 0.3902 | 1.9411 | 2.2803 | 1.8184 | 1.7158 | -0.4063 | -0.2786 | 0.9316 |
Gene:AT1G01470 | OctamerElement:AtREG557 | OctamerElement:AtREG470 | REG | GACACGTA | AGACACGT | 151.5 | 152.5 | TAIR9 | -0.1324 | 0.6446 | 2.3908 | 2.2909 | 2.0305 | 1.7483 | 1.1086 | 0.6323 | 0.3902 | 1.9411 | 2.2803 | 1.8184 | 1.7158 | -0.4063 | -0.2786 | 0.9316 |
Gene:AT1G01480 | OctamerElement:AtREG591 | REG | CCCATGGG | 74.5 | TAIR9 | -0.2913 | -0.2967 | -0.4686 | -0.2246 | -0.1990 | -0.4735 | -0.2741 | -0.3772 | -0.4936 | -0.2847 | -0.4238 | 1.0807 | -0.1789 | -0.5943 | -0.3990 | -0.4257 |
Gene:AT1G01490 | OctamerElement:AtREG395 | REG | TCACGCGC | 209.5 | TAIR9 | -0.6049 | -0.3020 | 0.8944 | 0.3862 | 0.0229 | -0.1844 | -0.1970 | -0.5232 | -0.4041 | -0.0251 | 0.2080 | 1.3945 | 1.3072 | -0.4995 | -0.6332 | 0.2307 |
Gene:AT1G01490 | OctamerElement:AtREG486 | REG | CACGCGCC | 222.5 | TAIR9 | -0.6049 | -0.3020 | 0.8944 | 0.3862 | 0.0229 | -0.1844 | -0.1970 | -0.5232 | -0.4041 | -0.0251 | 0.2080 | 1.3945 | 1.3072 | -0.4995 | -0.6332 | 0.2307 |
Gene:AT1G01500 | OctamerElement:AtREG426 | OctamerElement:AtREG378 | OctamerElement:AtREG372 | OctamerElement:AtREG386 | OctamerElement:AtREG443 | OctamerElement:AtREG610 | REG | TAAGCCCA | AAGCCCAT | AGCCCATT | GCCCATTT | CCCATTTA | TTTAACGG | 221.5 | 220.5 | 219.5 | 218.5 | 217.5 | 213.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG437 | OctamerElement:AtREG458 | OctamerElement:AtREG384 | REG | ATGGCCCA | TGGCCCAG | GGCCCAGT | 191.5 | 190.5 | 189.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG589 | REG | AAAAAGCC | 156.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG588 | OctamerElement:AtREG460 | OctamerElement:AtREG541 | REG | TCACACGT | CACACGTG | CACGTGCG | 137.5 | 136.5 | 134.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG567 | OctamerElement:AtREG602 | REG | AGGGTATT | GGGTATTT | 110.5 | 109.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG592 | REG | TTTGACCC | 80.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01500 | OctamerElement:AtREG646 | REG | CGTAATTA | 69.5 | TAIR9 | 0.0991 | 0.1577 | 0.0303 | -0.2610 | -0.2850 | -0.2132 | -0.1448 | -0.0134 | -0.1442 | -0.1484 | -0.2293 | 0.8450 | -0.1048 | 0.3469 | 0.2797 | 0.3827 |
Gene:AT1G01510 | OctamerElement:AtREG540 | OctamerElement:AtREG537 | OctamerElement:AtREG439 | OctamerElement:AtREG415 | OctamerElement:AtREG565 | REG | ACGGCGTC | GGCGTCGT | GCGTCGTT | CGTCGTTT | GTCGTTTA | 208.5 | 206.5 | 205.5 | 204.5 | 203.5 | TAIR9 | -0.1410 | -0.3996 | -0.7448 | -0.5216 | -0.5306 | -0.3986 | -0.2835 | -0.1798 | -0.0415 | -0.5019 | -0.5527 | -0.4965 | -0.7944 | 0.1715 | 0.3137 | -0.2027 |
Gene:AT1G01510 | OctamerElement:AtREG578 | REG | GATGACGT | 179.5 | TAIR9 | -0.1410 | -0.3996 | -0.7448 | -0.5216 | -0.5306 | -0.3986 | -0.2835 | -0.1798 | -0.0415 | -0.5019 | -0.5527 | -0.4965 | -0.7944 | 0.1715 | 0.3137 | -0.2027 |
Gene:AT1G01510 | OctamerElement:AtREG529 | OctamerElement:AtREG373 | OctamerElement:AtREG392 | OctamerElement:AtREG400 | REG | TTTTGGGC | TTTGGGCC | TTGGGCCC | TGGGCCCT | 112.5 | 111.5 | 110.5 | 109.5 | TAIR9 | -0.1410 | -0.3996 | -0.7448 | -0.5216 | -0.5306 | -0.3986 | -0.2835 | -0.1798 | -0.0415 | -0.5019 | -0.5527 | -0.4965 | -0.7944 | 0.1715 | 0.3137 | -0.2027 |
Gene:AT1G01540 | OctamerElement:AtREG630 | REG | CGACATCG | 155.5 | TAIR9 | 0.4297 | 0.3192 | 0.9263 | 0.9497 | 0.9536 | 0.9235 | 0.8307 | 0.6317 | 0.5391 | 0.8999 | 1.1870 | -0.7840 | 0.3087 | -0.0945 | -0.1439 | 0.3651 |
Gene:AT1G01550 | OctamerElement:AtREG632 | REG | TTGACTTT | 194.5 | TAIR9 | -0.5119 | -0.1088 | 0.5696 | 0.2556 | 0.2732 | 0.0850 | -0.0613 | -0.3431 | -0.3536 | -0.0403 | 0.1079 | 1.3787 | 0.8346 | -0.4978 | -0.5739 | 0.0248 |
Gene:AT1G01560 | OctamerElement:AtREG507 | REG | CCATGGGC | 203.5 | TAIR9 | -0.7170 | 1.8116 | 0.7515 | 2.3823 | 2.7550 | 2.7679 | 2.5794 | 1.4268 | 0.7484 | 2.4035 | 2.7282 | 1.9897 | 1.2034 | -1.4678 | -0.9397 | -1.1166 |
Gene:AT1G01620 | OctamerElement:AtREG553 | OctamerElement:AtREG554 | REG | CAACGGTC | TCCAACGG | 444.5 | 446.5 | TAIR9 | -0.2137 | -0.2528 | 0.0483 | 0.1568 | -0.0114 | -0.0909 | -0.2039 | -0.1864 | -0.3682 | -0.1487 | -0.0830 | -3.8942 | -0.3349 | 0.0149 | -0.0240 | 0.4214 |
Gene:AT1G01620 | OctamerElement:AtREG475 | REG | CTAGGCCC | 525.5 | TAIR9 | -0.2137 | -0.2528 | 0.0483 | 0.1568 | -0.0114 | -0.0909 | -0.2039 | -0.1864 | -0.3682 | -0.1487 | -0.0830 | -3.8942 | -0.3349 | 0.0149 | -0.0240 | 0.4214 |
Gene:AT1G01630 | OctamerElement:AtREG440 | OctamerElement:AtREG419 | OctamerElement:AtREG485 | REG | CTGACGTG | TGACGTGG | TGGGCTCA | 208.5 | 207.5 | 202.5 | TAIR9 | 0.2615 | 0.3819 | 0.1619 | 0.1798 | 0.0127 | 0.2297 | 0.2000 | 0.1501 | 0.2356 | 0.2631 | 0.3161 | -0.1248 | -0.1595 | 0.2733 | 0.4008 | 0.5583 |
Gene:AT1G01630 | OctamerElement:AtREG531 | REG | AAAACGGC | 187.5 | TAIR9 | 0.2615 | 0.3819 | 0.1619 | 0.1798 | 0.0127 | 0.2297 | 0.2000 | 0.1501 | 0.2356 | 0.2631 | 0.3161 | -0.1248 | -0.1595 | 0.2733 | 0.4008 | 0.5583 |
Gene:AT1G01630 | OctamerElement:AtREG533 | OctamerElement:AtREG402 | OctamerElement:AtREG355 | OctamerElement:AtREG624 | REG | GAGCCCAA | AGCCCAAT | GCCCAATA | CCCAATAG | 104.5 | 103.5 | 102.5 | 101.5 | TAIR9 | 0.2615 | 0.3819 | 0.1619 | 0.1798 | 0.0127 | 0.2297 | 0.2000 | 0.1501 | 0.2356 | 0.2631 | 0.3161 | -0.1248 | -0.1595 | 0.2733 | 0.4008 | 0.5583 |
Gene:AT1G01630 | OctamerElement:AtREG425 | OctamerElement:AtREG351 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG352 | OctamerElement:AtREG355 | REG | ATAAGGCC | TAAGGCCC | AAGGCCCA | AGGCCCAA | GGCCCAAT | GCCCAATA | 87.5 | 86.5 | 85.5 | 84.5 | 83.5 | 82.5 | TAIR9 | 0.2615 | 0.3819 | 0.1619 | 0.1798 | 0.0127 | 0.2297 | 0.2000 | 0.1501 | 0.2356 | 0.2631 | 0.3161 | -0.1248 | -0.1595 | 0.2733 | 0.4008 | 0.5583 |
Gene:AT1G01650 | OctamerElement:AtREG564 | OctamerElement:AtREG626 | REG | GCGTTTTA | CAGCGTTT | 1082.5 | 1084.5 | TAIR9 | -0.5050 | -0.5450 | -0.1502 | -0.1440 | -0.1713 | -0.3374 | -0.3344 | -0.3534 | -0.1362 | -0.3839 | -0.1491 | 0.8065 | 0.4147 | -0.4398 | -0.2664 | -0.4602 |
Gene:AT1G01650 | OctamerElement:AtREG632 | REG | AAAGTCAA | 1095.5 | TAIR9 | -0.5050 | -0.5450 | -0.1502 | -0.1440 | -0.1713 | -0.3374 | -0.3344 | -0.3534 | -0.1362 | -0.3839 | -0.1491 | 0.8065 | 0.4147 | -0.4398 | -0.2664 | -0.4602 |
Gene:AT1G01650 | OctamerElement:AtREG486 | REG | CACGCGCC | 1129.5 | TAIR9 | -0.5050 | -0.5450 | -0.1502 | -0.1440 | -0.1713 | -0.3374 | -0.3344 | -0.3534 | -0.1362 | -0.3839 | -0.1491 | 0.8065 | 0.4147 | -0.4398 | -0.2664 | -0.4602 |
Gene:AT1G01650 | OctamerElement:AtREG536 | REG | ACACGCGT | 1139.5 | TAIR9 | -0.5050 | -0.5450 | -0.1502 | -0.1440 | -0.1713 | -0.3374 | -0.3344 | -0.3534 | -0.1362 | -0.3839 | -0.1491 | 0.8065 | 0.4147 | -0.4398 | -0.2664 | -0.4602 |
Gene:AT1G01650 | OctamerElement:AtREG449 | OctamerElement:AtREG420 | OctamerElement:AtREG484 | REG | GGCCCAAC | TGGCCCAA | TTGGCCCA | 182.5 | 183.5 | 184.5 | TAIR9 | -0.5050 | -0.5450 | -0.1502 | -0.1440 | -0.1713 | -0.3374 | -0.3344 | -0.3534 | -0.1362 | -0.3839 | -0.1491 | 0.8065 | 0.4147 | -0.4398 | -0.2664 | -0.4602 |
Gene:AT1G01670 | OctamerElement:AtREG428 | OctamerElement:AtREG478 | OctamerElement:AtREG481 | OctamerElement:AtREG517 | OctamerElement:AtREG466 | OctamerElement:AtREG489 | REG | CGTGTCGT | ACGTGTCG | GACGTGTC | TGACGTGT | GTGACGTG | CGTGACGT | 62.5 | 63.5 | 64.5 | 65.5 | 66.5 | 67.5 | TAIR9 | 0.0369 | -0.0602 | -0.0185 | 0.1415 | 0.3137 | 0.1337 | 0.0692 | 0.2313 | 0.3177 | 0.0934 | 0.1044 | 0.5459 | 0.4222 | -0.0304 | 0.0618 | -0.2848 |
Gene:AT1G01690 | OctamerElement:AtREG417 | REG | TTATTGGG | 188.5 | TAIR9 | 0.1867 | 0.1302 | -0.0978 | -0.0206 | 0.2683 | 0.0828 | 0.0364 | 0.0822 | 0.1303 | 0.0054 | -0.0443 | -0.1805 | -0.1996 | 0.0785 | 0.0168 | 0.1514 |
Gene:AT1G01690 | OctamerElement:AtREG364 | OctamerElement:AtREG490 | OctamerElement:AtREG437 | REG | TATGGGCC | ATGGGCCA | TGGGCCAT | 169.5 | 168.5 | 167.5 | TAIR9 | 0.1867 | 0.1302 | -0.0978 | -0.0206 | 0.2683 | 0.0828 | 0.0364 | 0.0822 | 0.1303 | 0.0054 | -0.0443 | -0.1805 | -0.1996 | 0.0785 | 0.0168 | 0.1514 |
Gene:AT1G01690 | OctamerElement:AtREG558 | OctamerElement:AtREG357 | OctamerElement:AtREG372 | OctamerElement:AtREG378 | OctamerElement:AtREG376 | OctamerElement:AtREG365 | OctamerElement:AtREG601 | OctamerElement:AtREG394 | OctamerElement:AtREG364 | OctamerElement:AtREG354 | OctamerElement:AtREG447 | OctamerElement:AtREG411 | REG | CTAATGGG | TAATGGGC | AATGGGCT | ATGGGCTT | TGGGCTTT | GGGCTTTA | GGCTTTAT | TTATGGGC | TATGGGCC | ATGGGCCT | TGGGCCTC | GGGCCTCT | 149.5 | 148.5 | 147.5 | 146.5 | 145.5 | 144.5 | 143.5 | 139.5 | 138.5 | 137.5 | 136.5 | 135.5 | TAIR9 | 0.1867 | 0.1302 | -0.0978 | -0.0206 | 0.2683 | 0.0828 | 0.0364 | 0.0822 | 0.1303 | 0.0054 | -0.0443 | -0.1805 | -0.1996 | 0.0785 | 0.0168 | 0.1514 |
Gene:AT1G01710 | OctamerElement:AtREG504 | OctamerElement:AtREG490 | OctamerElement:AtREG437 | REG | CATGGGCC | ATGGGCCA | TGGGCCAT | 277.5 | 276.5 | 275.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG416 | OctamerElement:AtREG416 | OctamerElement:AtREG545 | REG | TTAAGGCC | GGCCTTAA | TTAAAGCC | 239.5 | 235.5 | 231.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG396 | OctamerElement:AtREG357 | OctamerElement:AtREG361 | OctamerElement:AtREG354 | OctamerElement:AtREG353 | OctamerElement:AtREG398 | REG | TTAATGGG | TAATGGGC | AATGGGCC | ATGGGCCT | TGGGCCTT | GGGCCTTG | 222.5 | 221.5 | 220.5 | 219.5 | 218.5 | 217.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG590 | OctamerElement:AtREG628 | REG | AACACGTG | ACACGTGA | 93.5 | 92.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG575 | REG | CGAACCGA | 71.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG513 | REG | GTCCACGT | 63.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01710 | OctamerElement:AtREG598 | OctamerElement:AtREG412 | OctamerElement:AtREG521 | REG | ATAAACCG | TAAACCGG | AAACCGGA | 47.5 | 46.5 | 45.5 | TAIR9 | -0.1464 | -0.0928 | 0.2133 | 0.1554 | 0.0493 | -0.0217 | -0.0905 | -0.1246 | -0.0765 | -0.0543 | -0.0286 | 0.6738 | 0.3863 | 0.1234 | 0.0805 | -0.2001 |
Gene:AT1G01720 | OctamerElement:AtREG644 | REG | ACCGGAAA | 280.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG451 | REG | GGTTCGGT | 242.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG576 | OctamerElement:AtREG569 | REG | GAAACGAC | AAACGACA | 183.5 | 182.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG471 | OctamerElement:AtREG371 | OctamerElement:AtREG388 | OctamerElement:AtREG419 | OctamerElement:AtREG440 | OctamerElement:AtREG515 | REG | TCGCCACG | CGCCACGT | GCCACGTC | CCACGTCA | CACGTCAG | ACGTCAGC | 146.5 | 145.5 | 144.5 | 143.5 | 142.5 | 141.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG472 | REG | ACGTGTCC | 113.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG464 | OctamerElement:AtREG382 | OctamerElement:AtREG460 | REG | CCCACGTG | CCACGTGT | CACGTGTG | 90.5 | 89.5 | 88.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01720 | OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG366 | OctamerElement:AtREG472 | REG | CGACACGT | GACACGTG | CACGTGTC | ACGTGTCC | 50.5 | 49.5 | 47.5 | 46.5 | TAIR9 | -1.8558 | -0.7839 | -0.8343 | -1.2236 | -1.4290 | -1.4127 | -1.7354 | -1.7989 | -1.0660 | -1.4353 | -0.7595 | 1.0362 | 0.7172 | -1.1502 | -1.4532 | -0.3721 |
Gene:AT1G01730 | OctamerElement:AtREG520 | OctamerElement:AtREG569 | OctamerElement:AtREG527 | REG | GTCGTTTT | AAACGACA | AACGACAC | 169.5 | 168.5 | 167.5 | TAIR9 | -1.0386 | -0.9852 | 0.2253 | 0.0103 | -0.4359 | -0.6206 | -0.8467 | -0.7954 | -0.7886 | -0.5490 | -0.4396 | 0.9868 | 0.8967 | -0.4953 | -0.2308 | -0.6524 |