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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name tooltip_DataTable
#download_from http://linkdata.org/work/rdf1s484i
#namespace Work http://linkdata.org/work/
#property explanation URL Work Name
#object_type_xsd string string string
#property_context Assertion Assertion Assertion
AtGenExpress Developmental Arabidopsis thaliana microarray measurements. AtGenExpress is a high-throughput database which includes microarray measurements of gene expression in several conditions. The Developmental Series includes measurements from the main tissue organs of the plants. Work:rdf1s456i AtGenExpress
Diurnal Circadian Arabidopsis thaliana microarray measurements. The DIURNAL project is a microarray gene expression database which was collected over two days (44 hours) at four hour intervals in various growth conditions. These measurements are made on 7-9 day old seedlings, and show gene expression levels across the whole plant. Work:rdf1s461i DIURNAL
ATTED_II The ATTED-II database uses gene co-expression analysis of the AtGenExpress data to predict functional 7 base-pair motifs in promoters. Motifs identified within a promoter region 200 bp upstream of the transcription start site. Work:rdf1s458i ATTED-II
PPDB_MPSS The Plant Promoter Database (PPDB) also deposits the data of transcription start sites (TSSs) detected by the CT-MPSS method. The CT-MPSS method is a combination of cap trapper (CT), a reliable method for preparing the 5' end of full-length cDNA, and massively parallel signature sequencing (MPSS), which enables ultra-parallel sequencing in a considerably shorter time and at lower cost than conventional sequencing methods. Work:rdf1s459i PPDB (Plant Promoter Database)
PPDB_reliable_LDSS The Plant Promoter Database (PPDB) uses word frequency analysis to identify 8 base-pair motifs in promoters. Motifs are categorized as TATA-box, Y-patch (a CT-rich region often found in plant TATA box promoters), the initiator near the transcription start site, and cis-regulatory motifs. The regulatory motifs are a group of 308 8 base-pair sequences which are used to represent regulatory sites. Work:rdf1s459i PPDB (Plant Promoter Database)
AtGenExpress_median Gene expression data from AtGenExpress was taken in triplicate, and we use the median value. Expression data was used as log-transformed absolute expression values. Work:rdf1s460i AtGenExpress median
diurnal_COL_LDHH For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_COL_SD For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_DD_DDHC For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LDHC For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LDHH_SM For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LDHH_ST For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LER_SD For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LIGHT5_HIF138_13 For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LIGHT5_HIF138_8 For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LIGHT5_znknOX For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LL12_LDHH For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LL23_LDHH For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LLHC For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LL_LDHC For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_LL_LLHC For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_lhyox_SD For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_longday For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_lux_2_LDHH For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_phyB9_SD For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s457i DIURNAL fitted up with sine wave
diurnal_shortday For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. Work:rdf1s457i DIURNAL fitted up with sine wave
AtGenExpress_normalize Expression data from AtGenExpress is used as values normalized to the mean of all experiments for the AtGenExpress data. Work:rdf1s369i AtGenExpress normalized
diurnal_COL_LDHH_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s370i DIURNAL normalized
diurnal_COL_SD_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s370i DIURNAL normalized
diurnal_DD_DDHC_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). Work:rdf1s370i DIURNAL normalized
diurnal_LDHC_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). Work:rdf1s370i DIURNAL normalized
diurnal_LDHH_SM_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. Work:rdf1s370i DIURNAL normalized
diurnal_LDHH_ST_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. Work:rdf1s370i DIURNAL normalized
diurnal_LER_SD_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s370i DIURNAL normalized
diurnal_LIGHT5_HIF138_13_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s370i DIURNAL normalized
diurnal_LIGHT5_HIF138_8_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s370i DIURNAL normalized
diurnal_LIGHT5_znknOX_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s370i DIURNAL normalized
diurnal_LL12_LDHH_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. Work:rdf1s370i DIURNAL normalized
diurnal_LL23_LDHH_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. Work:rdf1s370i DIURNAL normalized
diurnal_LLHC_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). Work:rdf1s370i DIURNAL normalized
diurnal_LL_LDHC_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s370i DIURNAL normalized
diurnal_LL_LLHC_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s370i DIURNAL normalized
diurnal_lhyox_SD_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s370i DIURNAL normalized
diurnal_longday_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. Work:rdf1s370i DIURNAL normalized
diurnal_lux_2_LDHH_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s370i DIURNAL normalized
diurnal_phyB9_SD_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s370i DIURNAL normalized
diurnal_shortday_normalize Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. Work:rdf1s370i DIURNAL normalized
AtGenExpress_ATTED_Flowering This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with flowering tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Fruit_Seeds This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with fruit and seed tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Leaf This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with leaf tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Root This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with root tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Seedling This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with seedling tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Stem This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with stem tissues. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_ATTED_Whole_Plant This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with whole plant body parts. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
Heptamer_elements A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value. Work:rdf1s328i Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full
AtGenExpress_PPDB_Flowering This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. This collection of Gene Expression Properties are associated with flowering tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Fruit_Seeds This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with fruit and seed tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Leaf This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with leaf tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Root This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with root tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Seedling This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with seedling tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Stem This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with stem tissues. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
AtGenExpress_PPDB_Whole_Plant This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with whole plant body parts. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
Octamer_elements A list of the 8mer sequence motifs from PPDB. This table lists each 8mer along with the appropriate median position from the TSS, calculated from all 8mers. Work:rdf1s329i Developmental Genomic (AtGenExpress + PPDB promoter motif) Full
DiurnalHours_ATTED_COL_LDHH This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_COL_SD This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_DD_DDHC This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LDHC This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LDHH_SM This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LDHH_ST This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LER_SD This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LIGHT5_HIF138_13 This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LIGHT5_HIF138_8 This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LIGHT5_znknOX This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LL12_LDHH This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LL23_LDHH This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LLHC This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LL_LDHC This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_LL_LLHC This is the data set of DIURNAL Circadian Mic4roarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_lhyox_SD This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_longday This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_lux_2_LDHH This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_phyB9_SD This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_ATTED_shortday This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. Work:rdf1s330i Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full
DiurnalHours_PPDB_COL_LDHH This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
DiurnalHours_PPDB_COL_SD This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
DiurnalHours_PPDB_DD_DDHC This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
DiurnalHours_PPDB_LDHC This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
DiurnalHours_PPDB_LDHH_SM This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
DiurnalHours_PPDB_LDHH_ST This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. Work:rdf1s331i Circadian Genomic (DIURNAL + PPDB promoter motif) Full
* Row count is limited to 100.