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Developmental Genomic (AtGenExpress Developmental gene expression + PPDB promoter motif) Triplicate Data

Full triplicate expression dataset of AtGenExpress plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB). MotifExpress tool allows the plloting of all triplicate data points during the design process, so the user has some idea of the experimental variation in the measurements.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_PPDB_Flowering This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant
This collection of Gene Expression Properties are associated with whole plant body parts.


License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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File Name
AtGenExpress_PPDB_Flowering
Table Data (Text)
2013.5.10
19.0MB
Table Data (Excel)
2013.5.10
21.4MB
RDF (Turtle)
2013.5.10
57.7MB
AtGenExpress_PPDB_Fruit_Seeds
Table Data (Text)
2013.5.10
7.3MB
Table Data (Excel)
2013.5.10
8.5MB
RDF (Turtle)
2013.5.10
20.3MB
AtGenExpress_PPDB_Leaf
Table Data (Text)
2013.5.10
11.4MB
Table Data (Excel)
2013.5.10
13.0MB
RDF (Turtle)
2013.5.10
33.4MB
AtGenExpress_PPDB_Root
Table Data (Text)
2013.5.10
6.2MB
Table Data (Excel)
2013.5.10
7.4MB
RDF (Turtle)
2013.5.10
17.3MB
AtGenExpress_PPDB_Seedling
Table Data (Text)
2013.5.10
9.3MB
Table Data (Excel)
2013.5.10
10.7MB
RDF (Turtle)
2013.5.10
27.0MB
AtGenExpress_PPDB_Stem
Table Data (Text)
2013.5.10
4.7MB
Table Data (Excel)
2013.5.10
5.7MB
RDF (Turtle)
2013.5.10
12.4MB
AtGenExpress_PPDB_Whole_Plant
Table Data (Text)
2013.5.10
4.7MB
Table Data (Excel)
2013.5.10
5.7MB
RDF (Turtle)
2013.5.10
12.4MB

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