GenoCon

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering_median	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median	This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements	A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.

value

useful

Select a file name to see the detais.

Show API List

#LINK
#lang	en
#attribution_name	GenoCon
#attribution_url	http://promotercad.org
#license	http://creativecommons.org/licenses/by/3.0/deed.ja
#file_name	AtGenExpress_ATTED_Seedling_median
#download_from	http://linkdata.org/work/rdf1s584i
#namespace	ATTED	http://atted.jp/data/locus/
#namespace	HeptamerElement	http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace	PLACE	http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace	PPDB	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	TAIR	http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property	motif	motif sequence	motif position	CEG	Origin of baseline sequence	label:Col-0_cotyl	label:Col-0_hyp	label:Col-0_root7	label:Col-0_veg_leaf	label:Col-0_leaf_1-2	label:Col-0_shoot_veg	label:Col-0_seedl_green	label:Col-0_roset7	label:Col-0_seedl_GM	label:Col-0_seedl_GM5	label:Col-0_sedlGM-21	label:Col-0_sedlGM5-21
#object_type_xsd	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string	string
#property_context	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion
ATTED:At1g01030.html	-	-	-	-	TAIR9	0.2648	-0.8464	-0.3660	0.2204	0.2205	-0.3466	0.6876	0.8597	0.2749	-0.0233	-0.3397	-0.1953
ATTED:At1g01050.html	HeptamerElement:ATATAAA	ATATAAA	65	0.08	PPDB	0.2037	0.5466	0.5413	-0.1038	0.1157	0.0290	-0.1344	-0.2196	-0.3435	-0.1523	-0.3090	-0.3645
ATTED:At1g01060.html	HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG	ACGTGTC \| CACGTGT \| CCACGTG	168 \| 169 \| 170	0.09 \| 0.10 \| 0.07	PPDB	0.7063	0.5057	-1.7062	0.3027	0.4185	-0.0295	0.5165	-1.3520	0.3868	0.1913	-0.4212	-0.1084
ATTED:At1g01070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:AAAATAT \| HeptamerElement:AAAATAT	ATAAATA \| TATAAAT \| AAAATAT \| AAAATAT	113 \| 114 \| 183 \| 524	0.08 \| 0.10 \| 0.07 \| 0.07	PPDB	1.2553	2.9507	1.4167	0.9051	-1.4511	2.5546	0.2773	-1.5584	-0.7363	0.3318	-0.0357	0.5810
ATTED:At1g01080.html	HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	ATGGGCC \| AATGGGC	287 \| 288	0.08 \| 0.09	PPDB	1.0456	-0.3976	-2.2484	1.1048	1.5059	0.5287	1.5765	1.1881	0.5613	0.7593	0.2263	0.0442
ATTED:At1g01090.html	HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAA \| ATATATA \| TATATAT \| ATATATA	43 \| 44 \| 45 \| 46	0.11 \| 0.10 \| 0.10 \| 0.10	PPDB	-0.2429	0.1641	0.1383	0.2934	0.3453	0.2650	0.3398	0.2574	0.2719	0.0247	-0.2207	-0.1247
ATTED:At1g01100.html	HeptamerElement:TATAAAC \| HeptamerElement:GGCCCAT \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGTCAA \| HeptamerElement:AAAGTCA	TATAAAC \| GGCCCAT \| GGGCCTA \| TGGGCCT \| ATGGGCC \| AATGGGC \| AGGCCCA \| AAGTCAA \| AAAGTCA	33 \| 61 \| 82 \| 83 \| 84 \| 85 \| 123 \| 182 \| 183	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.09 \| 0.08 \| 0.07 \| 0.07	PPDB	-1.0304	0.4462	0.7004	0.6541	-0.0587	0.8047	-0.1739	0.1146	-0.2880	-0.1915	-0.3705	-0.2872
ATTED:At1g01110.html	-	-	-	-	PPDB	-1.0696	-0.3329	0.6139	-0.4796	-0.8558	-0.0168	-0.3271	-0.7433	-0.7353	-0.6478	-0.4592	-0.3874
ATTED:At1g01130.html	HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCAAT	AAGCCCA \| AAAGCCC \| GCCCAAT	36 \| 37 \| 86	0.07 \| 0.06 \| 0.07	PPDB	-0.4167	-0.3666	-0.6256	-0.1351	-0.1958	-0.2125	-0.7262	-0.4024	-0.5039	-0.3408	0.5061	0.1588
ATTED:At1g01140.html	HeptamerElement:ACGTGGC \| HeptamerElement:ACGCGGA	ACGTGGC \| ACGCGGA	78 \| 113	0.07 \| 0.07	PPDB	1.3658	-1.3913	-4.6930	-0.4265	0.8047	-1.7026	-0.2672	0.0796	0.9521	0.8660	1.0895	1.6853
ATTED:At1g01150.html	HeptamerElement:AAACCCT \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC	AAACCCT \| AAACCCT \| TAAACCC	382 \| 407 \| 408	0.14 \| 0.14 \| 0.10	TAIR9	-0.0050	-0.0918	-0.0724	-0.0284	-0.0786	0.0448	0.0049	0.0260	-0.1304	-0.1361	-0.1315	-0.0788
ATTED:At1g01160.html	HeptamerElement:GGCCCAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:GGGCCTT	GGCCCAA \| GGCCCAA \| AGGCCCA \| GGGCCTT	166 \| 193 \| 194 \| 212	0.07 \| 0.07 \| 0.07 \| 0.06	PPDB	-0.5897	-0.2003	0.2562	0.3420	-0.5621	0.8233	-0.4401	-0.4022	-0.3731	-0.3893	-0.2151	-0.2148
ATTED:At1g01170.html	HeptamerElement:GATAAGA \| HeptamerElement:AGATAAG \| HeptamerElement:TTATCCA \| HeptamerElement:GCCCATT	GATAAGA \| AGATAAG \| TTATCCA \| GCCCATT	18 \| 19 \| 38 \| 64	0.06 \| 0.06 \| 0.09 \| 0.10	PPDB	0.5351	0.3850	-3.3323	0.2792	0.4643	0.1529	-0.1191	0.3487	0.7568	0.7130	0.8406	0.9037
ATTED:At1g01200.html	HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA	ATATAAA \| ATATAAA \| ATATAAA	38 \| 298 \| 322	0.08 \| 0.08 \| 0.08	TAIR9	0.0230	1.0040	1.2875	0.1936	0.1539	0.4620	0.1464	-0.0259	-0.4121	-0.1790	-0.2176	-0.0438
ATTED:At1g01220.html	HeptamerElement:CTCCAGA \| HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT	CTCCAGA \| TGACTTT \| TTGACTT \| TTTGACT	43 \| 108 \| 109 \| 110	0.06 \| 0.06 \| 0.07 \| 0.07	TAIR9	0.2430	0.2946	-0.0270	0.2391	0.6241	0.1391	1.1862	0.4765	-0.2229	0.0603	-0.4425	-0.2639
ATTED:At1g01225.html	HeptamerElement:TCTCTAG	TCTCTAG	95	0.06	TAIR9	-0.8310	0.4661	0.5450	-0.0061	-0.3617	0.0657	-0.3419	-0.2054	-0.6555	-0.6242	-0.8816	-1.0366
ATTED:At1g01230.html	HeptamerElement:AAATATC	AAATATC	43	0.13	PPDB	0.1812	0.0998	0.4644	-0.4377	-0.2012	-0.5735	-0.9986	-0.2758	0.1893	-0.0288	-0.0749	-0.2002
ATTED:At1g01240.html	HeptamerElement:CAGCTGT \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:ACACGTG	CAGCTGT \| CACGTGT \| ACACGTG \| CACGTGT \| ACACGTG \| ACACGTG	117 \| 132 \| 133 \| 477 \| 478 \| 518	0.07 \| 0.11 \| 0.10 \| 0.11 \| 0.10 \| 0.10	PPDB	0.3756	-0.1682	-0.2466	-0.8311	0.0200	-1.0497	-1.2738	-0.0189	0.1865	0.0998	0.3201	0.5520
ATTED:At1g01280.html	HeptamerElement:TATATAT	TATATAT	39	0.10	TAIR9	-0.3935	-0.4680	-0.5302	-0.4563	-0.3497	-0.4724	-0.2471	-0.3240	-0.3782	-0.4134	-0.2581	-0.3201
ATTED:At1g01290.html	HeptamerElement:AACCCTA	AACCCTA	32	0.13	TAIR9	-0.1824	0.1389	0.1947	-0.1690	-0.3014	0.1495	-0.2232	-0.2516	-0.3171	-0.2475	-0.5648	-0.2587
ATTED:At1g01300.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT \| HeptamerElement:TTATCCA	GATATTT \| AGATATT \| TTATCCA	128 \| 129 \| 177	0.10 \| 0.10 \| 0.06	PPDB	-1.0456	1.0348	0.2775	0.2560	-1.0049	0.8125	-0.1906	-0.1851	-0.8120	-0.4963	-0.8322	-0.7909
ATTED:At1g01310.html	HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:CATGCAT \| HeptamerElement:CCATGCA	TGACTTT \| TTGACTT \| TTTGACT \| CATGCAT \| CCATGCA	52 \| 53 \| 54 \| 60 \| 61	0.06 \| 0.07 \| 0.06 \| 0.06 \| 0.07	TAIR9	-0.3302	-0.5270	-0.4889	-0.6240	-0.4265	-0.4705	-0.5581	-0.5968	-0.6362	-0.4605	-0.5427	-0.3654
ATTED:At1g01320.html	-	-	-	-	PPDB	0.6750	-0.7763	-3.7772	1.2994	1.1654	0.9057	2.2965	0.9091	0.3918	0.5939	0.4238	0.4871
ATTED:At1g01430.html	HeptamerElement:CATGCAA \| HeptamerElement:CCGACAT \| HeptamerElement:AATATCT	CATGCAA \| CCGACAT \| AATATCT	150 \| 191 \| 223	0.08 \| 0.06 \| 0.07	PPDB	1.1448	0.9508	0.0106	0.0316	0.6946	-0.2237	0.8086	1.1144	0.9228	1.3445	0.9283	0.6595
ATTED:At1g01440.html	-	-	-	-	PPDB	0.1228	-0.4249	0.0674	-0.1523	-0.0818	-0.2381	0.2131	-0.0050	0.5338	0.0913	0.4541	0.0704
ATTED:At1g01470.html	HeptamerElement:AAACCCT \| HeptamerElement:AAAACCC \| HeptamerElement:GACACGT \| HeptamerElement:AGACACG \| HeptamerElement:AAATATC	AAACCCT \| AAAACCC \| GACACGT \| AGACACG \| AAATATC	115 \| 116 \| 152 \| 153 \| 233	0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.07	PPDB	2.2409	1.0865	1.5611	-0.0491	0.2713	-0.5371	-0.4677	1.2656	0.9052	0.8419	0.8584	1.1769
ATTED:At1g01480.html	HeptamerElement:TATATAA \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:CTATATA	TATATAA \| ATATAAA \| TATATAA \| CTATATA	27 \| 331 \| 332 \| 333	0.10 \| 0.08 \| 0.10 \| 0.13	PPDB	-0.3685	-0.3463	0.8415	-0.4724	-0.0861	-0.3873	-0.5413	-0.5059	-0.2119	-0.3985	-0.1959	-0.1875
ATTED:At1g01490.html	HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT	CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT	7 \| 8 \| 75 \| 93 \| 95 \| 97 \| 99 \| 152 \| 153 \| 155 \| 157 \| 159 \| 161	0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	0.2728	0.4566	-0.8336	-0.6756	-0.1963	-0.5600	-0.6347	-0.4744	0.6960	0.6861	0.7915	0.7454
ATTED:At1g01500.html	HeptamerElement:AAACCCT \| HeptamerElement:AATATCT \| HeptamerElement:AAATATC \| HeptamerElement:ACACGTG	AAACCCT \| AATATCT \| AAATATC \| ACACGTG	5 \| 13 \| 14 \| 136	0.14 \| 0.11 \| 0.11 \| 0.08	PPDB	-0.0942	-0.7810	-0.8420	-0.5545	-0.0085	-0.7959	-0.3597	0.4986	0.0681	-0.1642	-0.2362	-0.2561
ATTED:At1g01510.html	HeptamerElement:TCACTCC \| HeptamerElement:CCCTAAA \| HeptamerElement:ACCCTAA \| HeptamerElement:AACCCTA \| HeptamerElement:TTGGGCC	TCACTCC \| CCCTAAA \| ACCCTAA \| AACCCTA \| TTGGGCC	12 \| 44 \| 45 \| 46 \| 111	0.07 \| 0.08 \| 0.10 \| 0.13 \| 0.09	PPDB	-0.7388	0.3820	0.5461	0.3674	-0.1272	0.5714	-0.1008	-0.2100	-0.2123	-0.2748	-0.1108	-0.0953
ATTED:At1g01520.html	HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG	CACGTGT \| ACACGTG	64 \| 65	0.08 \| 0.08	TAIR9	0.1708	-0.2364	-0.4102	-0.2141	0.3646	-0.2585	0.3212	0.2091	0.1057	0.3358	-0.0528	0.2514
ATTED:At1g01540.html	HeptamerElement:CATGCAA \| HeptamerElement:CCACACA	CATGCAA \| CCACACA	38 \| 43	0.08 \| 0.07	PPDB	0.4690	-0.2246	-0.1055	0.0728	0.7252	-0.1913	0.2762	0.0950	0.4801	0.0825	0.8001	0.2026
ATTED:At1g01550.html	HeptamerElement:CGTCACA	CGTCACA	107	0.06	PPDB	0.0246	-0.0971	0.3598	-0.2948	-0.2551	-0.4191	-0.6266	-0.5191	0.5415	0.1419	0.5424	0.5271
ATTED:At1g01560.html	-	-	-	-	PPDB	1.3224	-0.6147	-0.9421	-1.3439	-0.7067	-1.6995	-1.2036	-1.2593	1.1684	0.1542	0.5073	1.4733
ATTED:At1g01600.html	HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA \| HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA	TATAAAT \| CTATAAA \| CCTATAA \| TATAAAT \| CTATAAA \| CCTATAA	27 \| 28 \| 29 \| 524 \| 525 \| 526	0.10 \| 0.09 \| 0.07 \| 0.10 \| 0.09 \| 0.07	PPDB	-1.5062	-1.4426	-0.8232	1.5288	-2.1179	0.1984	0.0969	0.6959	-0.9621	-0.3097	-0.2935	0.5292
ATTED:At1g01610.html	HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:AAAACCC \| HeptamerElement:TAAAACC	CTCTCTT \| CTCTCTT \| CTCTCTT \| AAAACCC \| TAAAACC	24 \| 34 \| 52 \| 71 \| 72	0.06 \| 0.06 \| 0.06 \| 0.09 \| 0.06	PPDB	-0.3973	0.1980	-0.5492	0.3425	-0.0487	0.2312	0.2240	0.5690	0.4461	0.5966	0.1223	-0.2024
ATTED:At1g01620.html	HeptamerElement:TTATCCA	TTATCCA	135	0.09	PPDB	-0.0406	1.0298	1.2670	0.2917	0.1150	0.3531	-0.4492	0.2768	0.5348	0.2787	1.0308	0.8591
ATTED:At1g01630.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT	83 \| 84 \| 85 \| 86 \| 103	0.07 \| 0.07 \| 0.10 \| 0.08 \| 0.07	PPDB	0.7636	-0.1267	0.1599	0.3625	0.2561	0.0617	0.1523	0.4507	-0.0412	0.4398	-0.1841	-0.3407
ATTED:At1g01650.html	-	-	-	-	PPDB	-0.4483	-1.1014	0.0838	-0.3332	-0.6280	-0.4879	-0.6136	-0.6299	-0.2065	-0.3289	-0.1639	0.1248
ATTED:At1g01670.html	HeptamerElement:ACGTGTC	ACGTGTC	64	0.10	PPDB	-0.0634	-0.0872	0.2307	-0.1317	0.0778	-0.0231	-0.2456	-0.2540	-0.3302	-0.2050	0.0914	-0.1143
ATTED:At1g01710.html	HeptamerElement:ACACGTG	ACACGTG	93	0.09	PPDB	0.0048	0.0933	-0.4576	-0.1590	0.0596	-0.1490	-0.0771	0.0016	-0.2264	-0.2222	-0.1781	-0.2636
ATTED:At1g01720.html	HeptamerElement:TATATAA \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:GACACGT \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC	TATATAA \| CGTGTCC \| ACGTGTC \| CACGTGT \| ACACGTG \| GACACGT \| TCTAGAA \| TTCTAGA \| CACGTGT \| CCACGTG \| CGTGTCC \| ACGTGTC	27 \| 46 \| 47 \| 48 \| 49 \| 50 \| 80 \| 81 \| 89 \| 90 \| 113 \| 114	0.11 \| 0.06 \| 0.09 \| 0.11 \| 0.09 \| 0.08 \| 0.14 \| 0.10 \| 0.11 \| 0.07 \| 0.06 \| 0.09	PPDB	-0.7999	-0.5480	0.0732	-0.9603	-0.6952	-1.3808	-1.2270	-0.5827	0.6697	0.4048	0.3232	1.0643
ATTED:At1g01730.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:ATGGGCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| ATGGGCC	96 \| 97 \| 98 \| 99 \| 110	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.08	PPDB	-0.5406	0.2608	0.1547	-0.2031	-1.5223	-0.0100	-0.9203	-0.7027	-0.1644	-0.4436	-0.2490	-0.1026
ATTED:At1g01740.html	-	-	-	-	TAIR9	0.2653	0.4905	0.0760	0.2692	0.1960	0.3167	0.4440	0.2508	-0.1771	0.0263	0.0803	0.1546
ATTED:At1g01770.html	HeptamerElement:ATATATA \| HeptamerElement:TATATAT	ATATATA \| TATATAT	57 \| 58	0.09 \| 0.09	PPDB	0.1709	-0.2340	-1.1032	-0.1695	0.3781	-0.4939	0.2966	-0.1049	-0.0920	-0.0367	0.1418	0.2795
ATTED:At1g01790.html	-	-	-	-	PPDB	1.0029	-0.2237	-1.3317	0.2187	1.1520	-0.3549	1.8134	1.2388	0.6066	0.6315	0.4622	0.4957
ATTED:At1g01820.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	33 \| 34	0.09 \| 0.09	PPDB	-0.0772	0.0278	0.0213	-0.2392	-0.3331	-0.1886	-0.5411	-0.2550	0.2297	0.0924	0.5661	0.4200
ATTED:At1g01840.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC	51 \| 52 \| 53 \| 54 \| 71 \| 72 \| 73 \| 74	0.06 \| 0.08 \| 0.10 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	-0.4500	-0.3504	-0.4800	0.2358	0.1455	0.3557	0.1876	0.5693	-0.5132	-0.5471	-0.4575	-0.3816
ATTED:At1g01860.html	-	-	-	-	PPDB	0.4079	-0.5111	-0.4993	0.6758	0.7819	0.3694	0.7426	0.6484	-0.2128	-0.0906	-0.1800	-0.1381
ATTED:At1g01900.html	HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAT \| ATATATA \| TATATAT \| ATATATA \| TATATAT \| ATATATA	46 \| 47 \| 48 \| 49 \| 113 \| 236	0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	PPDB	-1.4774	0.9704	-0.5637	0.3098	0.0941	-0.1682	0.7100	0.1680	-0.9736	-0.6603	-0.3626	0.1349
ATTED:At1g01920.html	HeptamerElement:TTAAACC \| HeptamerElement:AAAACCC \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAACCC	TTAAACC \| AAAACCC \| AAGCCCA \| AAAGCCC \| GCCCATA \| AGCCCAT \| AAGCCCA \| AAAACCC	4 \| 23 \| 73 \| 74 \| 83 \| 84 \| 85 \| 405	0.07 \| 0.09 \| 0.09 \| 0.06 \| 0.07 \| 0.08 \| 0.09 \| 0.09	PPDB	-0.5406	0.0777	0.5260	0.2162	-0.2931	0.5784	-0.2642	-0.3416	-0.1648	-0.2788	-0.1230	-0.2064
ATTED:At1g01930.html	HeptamerElement:ATGGGCC \| HeptamerElement:TATGGGC \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TATTGGG \| HeptamerElement:GCCGCCT	ATGGGCC \| TATGGGC \| GGGCCTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TATTGGG \| GCCGCCT	84 \| 85 \| 93 \| 94 \| 95 \| 96 \| 97 \| 109	0.08 \| 0.06 \| 0.06 \| 0.10 \| 0.09 \| 0.09 \| 0.06 \| 0.07	PPDB	-0.2658	-0.3690	-0.1679	0.1288	0.1270	0.1312	0.4277	-0.1384	0.0892	-0.1043	-0.0006	-0.0432
ATTED:At1g01940.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCATA \| GGCCCAT	111 \| 112 \| 113 \| 114 \| 122 \| 123	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.07 \| 0.10	PPDB	-0.8602	0.6473	0.9009	0.6387	-0.9114	1.1198	-0.4846	-0.1383	-0.2904	-0.0010	-0.1628	-0.4427
ATTED:At1g01950.html	HeptamerElement:AAAATAT \| HeptamerElement:CTCTCTT	AAAATAT \| CTCTCTT	20 \| 169	0.07 \| 0.06	PPDB	-0.2395	0.0060	0.1530	0.1840	-0.0667	0.3694	0.2489	-0.4473	0.1678	-0.1651	0.2374	0.0329
ATTED:At1g01970.html	HeptamerElement:TCTCTAG \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	TCTCTAG \| GCCCATA \| GGCCCAT \| AGGCCCA \| AAGGCCC \| GCCCAAT \| GGCCCAA \| AGGCCCA \| ATGGGCC \| AATGGGC	104 \| 120 \| 121 \| 122 \| 123 \| 138 \| 139 \| 140 \| 160 \| 161	0.06 \| 0.07 \| 0.10 \| 0.10 \| 0.08 \| 0.07 \| 0.07 \| 0.10 \| 0.07 \| 0.07	PPDB	0.2418	-0.6734	-1.6428	0.5948	0.8616	0.1159	1.6715	0.9570	0.1518	0.0660	-0.4332	-0.2203
ATTED:At1g01990.html	HeptamerElement:CTCTCTT \| HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT	CTCTCTT \| CCCATTA \| GCCCATT \| AGCCCAT \| TGGGCTT \| TGGGCTT \| ATGGGCT	37 \| 61 \| 62 \| 63 \| 74 \| 123 \| 124	0.06 \| 0.07 \| 0.10 \| 0.09 \| 0.06 \| 0.06 \| 0.06	PPDB	0.1590	-0.1620	-0.5019	-0.0459	-0.1075	0.1668	-0.0929	0.1948	0.5531	0.0834	0.5163	0.2495
ATTED:At1g02020.html	HeptamerElement:TGCCGAC	TGCCGAC	118	0.08	PPDB	0.1567	-0.6039	-0.9744	-0.3641	0.3798	-0.4130	0.3426	0.0973	-0.0085	-0.0702	0.1441	0.0902
ATTED:At1g02050.html	-	-	-	-	TAIR9	-0.5723	-0.4014	-0.2392	-0.4091	-0.2236	-0.2743	-0.3945	-0.5481	-0.0939	-0.4869	0.3237	0.2057
ATTED:At1g02060.html	HeptamerElement:AGGGTTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TCTAGAA \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:AGGGTTT	AGGGTTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| GCCCATT \| AGCCCAT \| TCTAGAA \| GGGCCTA \| TGGGCCT \| TTGGGCC \| ATTGGGC \| AGGGTTT	12 \| 44 \| 45 \| 46 \| 56 \| 57 \| 72 \| 90 \| 91 \| 92 \| 93 \| 269	0.10 \| 0.09 \| 0.08 \| 0.08 \| 0.10 \| 0.08 \| 0.11 \| 0.06 \| 0.09 \| 0.08 \| 0.08 \| 0.10	PPDB	-0.2962	-0.0597	-0.0671	0.1901	-0.2311	0.3435	0.4027	-0.3422	0.0526	-0.1100	0.2439	0.0054
ATTED:At1g02070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	ATAAATA \| TATAAAT \| ATATAAA \| TATATAA \| ATATATA \| TATATAT \| ATATATA \| ATATATA \| TATATAT \| ATATATA	6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12 \| 28 \| 29 \| 30	0.09 \| 0.10 \| 0.09 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	TAIR9	-0.9894	-1.1287	-0.9111	-0.7868	-0.5808	-0.8095	-0.7691	-0.4438	-0.8244	-0.4575	-0.4817	-0.5288
ATTED:At1g02080.html	HeptamerElement:AACCCTA	AACCCTA	436	0.10	PPDB	-0.3811	0.0366	0.1522	-0.1789	-0.6359	-0.0563	0.2029	-0.2921	-0.5113	-0.5415	-0.3789	-0.3822
ATTED:At1g02090.html	HeptamerElement:ATATAAA \| HeptamerElement:GTCGGTC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:CGCGGTT \| HeptamerElement:ACGCGGT \| HeptamerElement:AGCCCAA	ATATAAA \| GTCGGTC \| TCTAGAA \| TTCTAGA \| GCCCAAT \| AGCCCAA \| CGCGGTT \| ACGCGGT \| AGCCCAA	26 \| 50 \| 64 \| 65 \| 84 \| 85 \| 139 \| 140 \| 492	0.09 \| 0.06 \| 0.12 \| 0.09 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	-0.5110	-0.2052	0.3157	0.3668	-0.4247	0.7088	-0.2757	-0.1168	-0.4541	-0.6540	-0.7436	-0.6225
ATTED:At1g02100.html	HeptamerElement:TTGGGCT \| HeptamerElement:ATTGGGC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CTTCTAG	TTGGGCT \| ATTGGGC \| TCTAGAA \| TTCTAGA \| CTTCTAG	138 \| 139 \| 158 \| 159 \| 160	0.07 \| 0.08 \| 0.10 \| 0.10 \| 0.08	PPDB	-0.0205	0.0349	0.5348	-0.0331	-0.2421	0.0192	-0.3289	-0.3091	0.3667	-0.0040	0.5942	0.4810
ATTED:At1g02120.html	HeptamerElement:GGCCCAA	GGCCCAA	176	0.07	TAIR9	0.1552	0.3928	-0.1072	-0.3939	-0.4534	-0.2314	0.0297	-0.2012	0.1993	0.0240	0.2806	0.5024
ATTED:At1g02130.html	HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC	GGCCCAA \| AGGCCCA \| AAGGCCC \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TGGGCCT \| TTGGGCC \| ATTGGGC	52 \| 53 \| 54 \| 79 \| 80 \| 81 \| 190 \| 191 \| 192	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.08 \| 0.09 \| 0.08 \| 0.08	PPDB	-0.0821	-0.1791	0.3310	-0.0285	0.1083	0.1540	-0.2996	0.0436	-0.1179	-0.2946	-0.2119	-0.1534
ATTED:At1g02140.html	HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:GTCGGCA	CCCATTA \| GCCCATT \| AGCCCAT \| AAGCCCA \| GCCCAAT \| GGCCCAA \| GGGCCTT \| TGGGCCT \| GTCGGCA	64 \| 65 \| 66 \| 67 \| 78 \| 79 \| 112 \| 113 \| 198	0.06 \| 0.09 \| 0.07 \| 0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.10 \| 0.06	PPDB	-0.4172	-0.1313	0.3036	0.0978	-0.2223	0.3993	-0.3882	-0.0944	-0.1938	-0.0959	-0.0897	-0.1582
ATTED:At1g02160.html	HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:AAGGCCC \| HeptamerElement:TTGGGCC \| HeptamerElement:AGGCCCA	GGCCCAT \| AGGCCCA \| AAGGCCC \| TATATAA \| ATATATA \| AAGGCCC \| TTGGGCC \| AGGCCCA	8 \| 9 \| 10 \| 31 \| 32 \| 47 \| 64 \| 538	0.09 \| 0.10 \| 0.08 \| 0.10 \| 0.08 \| 0.08 \| 0.09 \| 0.10	PPDB	-0.3327	-0.0931	-0.0964	-0.2187	-0.5008	-0.0428	-1.1439	-0.3879	-0.3248	-0.3153	0.1802	-0.1077
ATTED:At1g02180.html	HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:AGCCCAA	GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC \| AGCCCAA	69 \| 70 \| 71 \| 72 \| 88	0.07 \| 0.07 \| 0.09 \| 0.06 \| 0.07	PPDB	-0.8392	-0.0291	-0.5210	0.5904	-0.1335	0.7480	-0.2026	0.0602	-0.8890	-0.5753	-0.8193	-0.7757
ATTED:At1g02190.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:CTCTATA	TATATAA \| CTATATA \| TCTATAT \| CTCTATA	28 \| 29 \| 30 \| 31	0.11 \| 0.13 \| 0.10 \| 0.10	PPDB	-1.6858	-1.9494	-1.9254	-1.3211	-1.6105	-1.0977	-1.7056	-1.3964	-1.6099	-1.6230	-1.1279	-0.5058
ATTED:At1g02205.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TATAAAC \| HeptamerElement:ATATAAA \| HeptamerElement:ATATCTA	TATATAA \| CTATATA \| TATAAAC \| ATATAAA \| ATATCTA	34 \| 35 \| 46 \| 47 \| 70	0.11 \| 0.13 \| 0.07 \| 0.08 \| 0.06	PPDB	-3.1091	-4.1794	-4.3703	0.8205	-0.4170	0.1307	-0.1829	0.1592	-2.1517	-1.4126	-0.2288	0.9966
ATTED:At1g02260.html	HeptamerElement:CGTGGCA \| HeptamerElement:ACGTGGC	CGTGGCA \| ACGTGGC	46 \| 47	0.08 \| 0.09	PPDB	-0.1362	-0.6294	-0.0405	-0.3872	-0.5129	-0.2199	-0.3868	-0.4930	-0.5275	-0.4155	-0.2599	-0.2905
ATTED:At1g02270.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	126 \| 127	0.09 \| 0.09	PPDB	0.7715	-0.2469	0.3026	-0.1414	0.3904	-0.3271	-0.1543	0.3258	0.5087	0.1165	0.4680	0.2885
ATTED:At1g02280.html	HeptamerElement:GATAAGG	GATAAGG	15	0.07	PPDB	-0.1093	-0.4895	-1.2771	1.5166	1.2660	1.3047	1.0409	0.7961	0.3371	0.2385	0.1090	-0.0991
ATTED:At1g02310.html	HeptamerElement:CCACACA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA	CCACACA \| TATATAA \| ATATATA \| TATATAT \| ACGCGTT \| TATATAA \| ATATATA	25 \| 34 \| 35 \| 36 \| 131 \| 541 \| 542	0.06 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.11 \| 0.10	PPDB	-0.6110	-1.0680	0.4736	-0.7562	-0.4625	-0.8974	-0.9113	-0.8234	-0.9031	-0.3398	-0.7205	0.4142
ATTED:At1g02330.html	HeptamerElement:GGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:TGGGCCT	GGCCCAT \| TGGGCTT \| ATGGGCT \| AATGGGC \| ATGGGCT \| AATGGGC \| TGGGCCT	90 \| 105 \| 106 \| 107 \| 179 \| 180 \| 199	0.08 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	-0.7469	0.0152	0.4156	0.3503	-0.5951	0.5423	-0.2009	-0.4407	-0.2302	-0.3838	-0.5161	-0.5255
ATTED:At1g02340.html	HeptamerElement:CCACACA	CCACACA	114	0.06	PPDB	-1.3166	-0.9451	-1.5599	-1.2676	-1.3238	-1.1360	-1.4466	-0.5572	-0.9088	-0.4063	1.1246	1.0434
ATTED:At1g02360.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:AACGCGT \| HeptamerElement:TCTATAT	TATATAA \| CTATATA \| TCTATAT \| ACGCGTT \| AACGCGT \| TCTATAT	30 \| 31 \| 32 \| 52 \| 53 \| 416	0.11 \| 0.13 \| 0.10 \| 0.10 \| 0.07 \| 0.10	PPDB	1.1255	-0.0168	2.6005	-0.5565	0.5353	-0.9383	-0.7757	-0.3756	3.7390	1.7124	0.9583	-0.2431
ATTED:At1g02370.html	HeptamerElement:AACCCTA \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC \| HeptamerElement:TTAAACC	AACCCTA \| AAACCCT \| TAAACCC \| TTAAACC	31 \| 32 \| 33 \| 34	0.11 \| 0.12 \| 0.08 \| 0.06	PPDB	-0.8927	-0.2133	0.3905	0.5629	-0.6276	1.1310	0.2270	-0.0133	-0.8144	-0.5937	-0.5457	-0.9451
ATTED:At1g02390.html	HeptamerElement:TATATAA \| HeptamerElement:AAATATC \| HeptamerElement:CATGCAA \| HeptamerElement:ACGCGTA \| HeptamerElement:GACGCGT \| HeptamerElement:AAATATC	TATATAA \| AAATATC \| CATGCAA \| ACGCGTA \| GACGCGT \| AAATATC	28 \| 71 \| 122 \| 172 \| 173 \| 180	0.11 \| 0.07 \| 0.07 \| 0.10 \| 0.06 \| 0.07	PPDB	1.6853	-0.7443	-0.2425	-0.2826	0.2979	-0.6068	-0.4089	0.2903	0.0546	0.3650	0.8724	1.3134
ATTED:At1g02400.html	HeptamerElement:AATAATT \| HeptamerElement:AATAATT	AATAATT \| AATAATT	236 \| 332	0.06 \| 0.06	PPDB	0.2075	-0.1910	2.2288	-0.1403	-0.1250	0.2547	-1.1437	-0.2126	3.4574	1.2225	1.9654	1.5490
ATTED:At1g02410.html	HeptamerElement:TTGACTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT	TTGACTT \| TTGACTT \| TTTGACT \| AATAATT \| TGGGCTT \| TGGGCTT \| AATAATT \| TGGGCTT	40 \| 48 \| 49 \| 113 \| 149 \| 173 \| 307 \| 412	0.08 \| 0.08 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06	PPDB	-0.1003	-0.2017	-0.3698	-0.0526	-0.0420	0.0891	-0.1894	-0.1193	-0.0547	-0.2800	-0.3009	-0.4282
ATTED:At1g02450.html	HeptamerElement:AAATATC \| HeptamerElement:AAATATC	AAATATC \| AAATATC	165 \| 187	0.07 \| 0.07	PPDB	-1.0035	0.2128	-0.5369	-1.2697	-1.2231	-0.9620	-1.4691	-1.7672	-1.3361	-0.8081	-0.8647	-0.4604
ATTED:At1g02460.html	HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GATATTT	ATATAAA \| TATATAA \| ATATATA \| TATATAT \| AAGCCCA \| GATATTT	47 \| 48 \| 49 \| 50 \| 68 \| 126	0.08 \| 0.10 \| 0.09 \| 0.10 \| 0.09 \| 0.09	TAIR9	0.1319	-0.2088	0.3913	-0.0370	0.3203	-0.1450	0.1113	0.4410	-0.1057	0.0493	0.0040	0.0141
ATTED:At1g02470.html	HeptamerElement:AAAGTCA	AAAGTCA	164	0.07	TAIR9	-0.6860	-0.6852	-1.0510	-0.5320	-0.5367	-0.8712	-0.9769	-0.5578	-0.6504	-0.1543	0.0063	0.7946
ATTED:At1g02475.html	-	-	-	-	PPDB	1.4713	-0.4213	-2.7638	-0.1175	1.0314	-0.8854	0.5075	0.7202	0.9047	1.0444	0.8418	0.8862

* Row count is limited to 100.

Link and Publish your data

to the Linked Open Data Community

Linkdata Work Information

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median