GenoCon

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering_median	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median	This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements	A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.

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#LINK
#lang	en
#attribution_name	GenoCon
#attribution_url	http://promotercad.org
#license	http://creativecommons.org/licenses/by/3.0/deed.ja
#file_name	AtGenExpress_ATTED_Stem_median
#download_from	http://linkdata.org/work/rdf1s584i
#namespace	ATTED	http://atted.jp/data/locus/
#namespace	HeptamerElement	http://linkdata.org/work/rdf1s328i/Heptamer_elements.html#
#namespace	PLACE	http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace	PPDB	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	TAIR	http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property	motif	motif sequence	motif position	CEG	Origin of baseline sequence	label:Col-0_lf7_petio	label:Col-0_stem_2nd	label:Col-0_stem_1st
#object_type_xsd	string	string	string	string	string	string	string	string
#property_context	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion
ATTED:At1g01030.html	-	-	-	-	TAIR9	-0.5317	-0.6408	-0.8056
ATTED:At1g01050.html	HeptamerElement:ATATAAA	ATATAAA	65	0.08	PPDB	0.4228	0.4864	0.5465
ATTED:At1g01060.html	HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG	ACGTGTC \| CACGTGT \| CCACGTG	168 \| 169 \| 170	0.09 \| 0.10 \| 0.07	PPDB	-0.5574	1.6486	-0.3161
ATTED:At1g01070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:AAAATAT \| HeptamerElement:AAAATAT	ATAAATA \| TATAAAT \| AAAATAT \| AAAATAT	113 \| 114 \| 183 \| 524	0.08 \| 0.10 \| 0.07 \| 0.07	PPDB	0.8701	1.3500	2.1661
ATTED:At1g01080.html	HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	ATGGGCC \| AATGGGC	287 \| 288	0.08 \| 0.09	PPDB	1.1913	-0.7190	-0.4642
ATTED:At1g01090.html	HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAA \| ATATATA \| TATATAT \| ATATATA	43 \| 44 \| 45 \| 46	0.11 \| 0.10 \| 0.10 \| 0.10	PPDB	-0.0139	-0.6197	-0.4401
ATTED:At1g01100.html	HeptamerElement:TATAAAC \| HeptamerElement:GGCCCAT \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGTCAA \| HeptamerElement:AAAGTCA	TATAAAC \| GGCCCAT \| GGGCCTA \| TGGGCCT \| ATGGGCC \| AATGGGC \| AGGCCCA \| AAGTCAA \| AAAGTCA	33 \| 61 \| 82 \| 83 \| 84 \| 85 \| 123 \| 182 \| 183	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.09 \| 0.08 \| 0.07 \| 0.07	PPDB	-0.0983	-1.0168	-0.3206
ATTED:At1g01110.html	-	-	-	-	PPDB	0.1471	-0.1759	-0.0845
ATTED:At1g01130.html	HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCAAT	AAGCCCA \| AAAGCCC \| GCCCAAT	36 \| 37 \| 86	0.07 \| 0.06 \| 0.07	PPDB	-0.4628	0.0156	0.0964
ATTED:At1g01140.html	HeptamerElement:ACGTGGC \| HeptamerElement:ACGCGGA	ACGTGGC \| ACGCGGA	78 \| 113	0.07 \| 0.07	PPDB	0.1882	0.1096	0.1103
ATTED:At1g01150.html	HeptamerElement:AAACCCT \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC	AAACCCT \| AAACCCT \| TAAACCC	382 \| 407 \| 408	0.14 \| 0.14 \| 0.10	TAIR9	-0.0733	-0.0889	-0.1365
ATTED:At1g01160.html	HeptamerElement:GGCCCAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:GGGCCTT	GGCCCAA \| GGCCCAA \| AGGCCCA \| GGGCCTT	166 \| 193 \| 194 \| 212	0.07 \| 0.07 \| 0.07 \| 0.06	PPDB	-1.0307	-0.4878	-0.4460
ATTED:At1g01170.html	HeptamerElement:GATAAGA \| HeptamerElement:AGATAAG \| HeptamerElement:TTATCCA \| HeptamerElement:GCCCATT	GATAAGA \| AGATAAG \| TTATCCA \| GCCCATT	18 \| 19 \| 38 \| 64	0.06 \| 0.06 \| 0.09 \| 0.10	PPDB	0.7376	0.2681	0.4117
ATTED:At1g01200.html	HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA \| HeptamerElement:ATATAAA	ATATAAA \| ATATAAA \| ATATAAA	38 \| 298 \| 322	0.08 \| 0.08 \| 0.08	TAIR9	0.5434	0.1030	1.1176
ATTED:At1g01220.html	HeptamerElement:CTCCAGA \| HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT	CTCCAGA \| TGACTTT \| TTGACTT \| TTTGACT	43 \| 108 \| 109 \| 110	0.06 \| 0.06 \| 0.07 \| 0.07	TAIR9	0.3768	0.5223	0.7168
ATTED:At1g01225.html	HeptamerElement:TCTCTAG	TCTCTAG	95	0.06	TAIR9	-0.3053	-0.4065	0.2226
ATTED:At1g01230.html	HeptamerElement:AAATATC	AAATATC	43	0.13	PPDB	0.5103	0.6769	0.5931
ATTED:At1g01240.html	HeptamerElement:CAGCTGT \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:ACACGTG	CAGCTGT \| CACGTGT \| ACACGTG \| CACGTGT \| ACACGTG \| ACACGTG	117 \| 132 \| 133 \| 477 \| 478 \| 518	0.07 \| 0.11 \| 0.10 \| 0.11 \| 0.10 \| 0.10	PPDB	0.0978	1.1440	0.6267
ATTED:At1g01280.html	HeptamerElement:TATATAT	TATATAT	39	0.10	TAIR9	-0.2829	-0.2926	-0.4725
ATTED:At1g01290.html	HeptamerElement:AACCCTA	AACCCTA	32	0.13	TAIR9	-0.0707	0.5395	0.4675
ATTED:At1g01300.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT \| HeptamerElement:TTATCCA	GATATTT \| AGATATT \| TTATCCA	128 \| 129 \| 177	0.10 \| 0.10 \| 0.06	PPDB	-0.1244	-1.0616	0.7035
ATTED:At1g01310.html	HeptamerElement:TGACTTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:CATGCAT \| HeptamerElement:CCATGCA	TGACTTT \| TTGACTT \| TTTGACT \| CATGCAT \| CCATGCA	52 \| 53 \| 54 \| 60 \| 61	0.06 \| 0.07 \| 0.06 \| 0.06 \| 0.07	TAIR9	-0.4919	-0.4214	-0.6218
ATTED:At1g01320.html	-	-	-	-	PPDB	0.3616	-0.6009	-0.8901
ATTED:At1g01430.html	HeptamerElement:CATGCAA \| HeptamerElement:CCGACAT \| HeptamerElement:AATATCT	CATGCAA \| CCGACAT \| AATATCT	150 \| 191 \| 223	0.08 \| 0.06 \| 0.07	PPDB	0.4955	1.4065	1.0772
ATTED:At1g01440.html	-	-	-	-	PPDB	0.0607	0.5293	-0.1127
ATTED:At1g01470.html	HeptamerElement:AAACCCT \| HeptamerElement:AAAACCC \| HeptamerElement:GACACGT \| HeptamerElement:AGACACG \| HeptamerElement:AAATATC	AAACCCT \| AAAACCC \| GACACGT \| AGACACG \| AAATATC	115 \| 116 \| 152 \| 153 \| 233	0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.07	PPDB	2.0208	1.2722	2.5183
ATTED:At1g01480.html	HeptamerElement:TATATAA \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:CTATATA	TATATAA \| ATATAAA \| TATATAA \| CTATATA	27 \| 331 \| 332 \| 333	0.10 \| 0.08 \| 0.10 \| 0.13	PPDB	-0.5035	-0.5624	-0.6208
ATTED:At1g01490.html	HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:CTCTCTT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT \| HeptamerElement:TCTCTCT	CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| CTCTCTT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT \| TCTCTCT	7 \| 8 \| 75 \| 93 \| 95 \| 97 \| 99 \| 152 \| 153 \| 155 \| 157 \| 159 \| 161	0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	-0.0184	0.5416	0.8559
ATTED:At1g01500.html	HeptamerElement:AAACCCT \| HeptamerElement:AATATCT \| HeptamerElement:AAATATC \| HeptamerElement:ACACGTG	AAACCCT \| AATATCT \| AAATATC \| ACACGTG	5 \| 13 \| 14 \| 136	0.14 \| 0.11 \| 0.11 \| 0.08	PPDB	-0.1572	-0.4421	0.0298
ATTED:At1g01510.html	HeptamerElement:TCACTCC \| HeptamerElement:CCCTAAA \| HeptamerElement:ACCCTAA \| HeptamerElement:AACCCTA \| HeptamerElement:TTGGGCC	TCACTCC \| CCCTAAA \| ACCCTAA \| AACCCTA \| TTGGGCC	12 \| 44 \| 45 \| 46 \| 111	0.07 \| 0.08 \| 0.10 \| 0.13 \| 0.09	PPDB	0.0576	0.0838	0.3958
ATTED:At1g01520.html	HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG	CACGTGT \| ACACGTG	64 \| 65	0.08 \| 0.08	TAIR9	-0.1037	-0.2085	-0.1777
ATTED:At1g01540.html	HeptamerElement:CATGCAA \| HeptamerElement:CCACACA	CATGCAA \| CCACACA	38 \| 43	0.08 \| 0.07	PPDB	0.5840	-0.2105	0.1091
ATTED:At1g01550.html	HeptamerElement:CGTCACA	CGTCACA	107	0.06	PPDB	-0.1782	0.6675	0.1946
ATTED:At1g01560.html	-	-	-	-	PPDB	1.4287	-0.5627	-0.5257
ATTED:At1g01600.html	HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA \| HeptamerElement:TATAAAT \| HeptamerElement:CTATAAA \| HeptamerElement:CCTATAA	TATAAAT \| CTATAAA \| CCTATAA \| TATAAAT \| CTATAAA \| CCTATAA	27 \| 28 \| 29 \| 524 \| 525 \| 526	0.10 \| 0.09 \| 0.07 \| 0.10 \| 0.09 \| 0.07	PPDB	-1.8311	-0.3377	0.6035
ATTED:At1g01610.html	HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:CTCTCTT \| HeptamerElement:AAAACCC \| HeptamerElement:TAAAACC	CTCTCTT \| CTCTCTT \| CTCTCTT \| AAAACCC \| TAAAACC	24 \| 34 \| 52 \| 71 \| 72	0.06 \| 0.06 \| 0.06 \| 0.09 \| 0.06	PPDB	-0.5183	-1.1900	-0.8380
ATTED:At1g01620.html	HeptamerElement:TTATCCA	TTATCCA	135	0.09	PPDB	0.6155	0.8660	0.8978
ATTED:At1g01630.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT	83 \| 84 \| 85 \| 86 \| 103	0.07 \| 0.07 \| 0.10 \| 0.08 \| 0.07	PPDB	-0.1043	-0.2993	-1.1529
ATTED:At1g01650.html	-	-	-	-	PPDB	-0.4582	-0.0009	0.0951
ATTED:At1g01670.html	HeptamerElement:ACGTGTC	ACGTGTC	64	0.10	PPDB	0.0984	0.1499	0.0715
ATTED:At1g01710.html	HeptamerElement:ACACGTG	ACACGTG	93	0.09	PPDB	-0.1457	0.1167	0.0745
ATTED:At1g01720.html	HeptamerElement:TATATAA \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC \| HeptamerElement:CACGTGT \| HeptamerElement:ACACGTG \| HeptamerElement:GACACGT \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CACGTGT \| HeptamerElement:CCACGTG \| HeptamerElement:CGTGTCC \| HeptamerElement:ACGTGTC	TATATAA \| CGTGTCC \| ACGTGTC \| CACGTGT \| ACACGTG \| GACACGT \| TCTAGAA \| TTCTAGA \| CACGTGT \| CCACGTG \| CGTGTCC \| ACGTGTC	27 \| 46 \| 47 \| 48 \| 49 \| 50 \| 80 \| 81 \| 89 \| 90 \| 113 \| 114	0.11 \| 0.06 \| 0.09 \| 0.11 \| 0.09 \| 0.08 \| 0.14 \| 0.10 \| 0.11 \| 0.07 \| 0.06 \| 0.09	PPDB	-1.6808	0.0683	-1.2780
ATTED:At1g01730.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:ATGGGCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| ATGGGCC	96 \| 97 \| 98 \| 99 \| 110	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.08	PPDB	-0.4467	1.1027	0.3984
ATTED:At1g01740.html	-	-	-	-	TAIR9	-0.2200	0.2413	-0.1295
ATTED:At1g01770.html	HeptamerElement:ATATATA \| HeptamerElement:TATATAT	ATATATA \| TATATAT	57 \| 58	0.09 \| 0.09	PPDB	0.1155	0.3261	-0.1334
ATTED:At1g01790.html	-	-	-	-	PPDB	0.6834	0.2154	0.0570
ATTED:At1g01820.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	33 \| 34	0.09 \| 0.09	PPDB	-0.2058	0.3844	0.1349
ATTED:At1g01840.html	HeptamerElement:GCCCAAA \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC	GCCCAAA \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC	51 \| 52 \| 53 \| 54 \| 71 \| 72 \| 73 \| 74	0.06 \| 0.08 \| 0.10 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	-0.3131	-0.4739	-0.0925
ATTED:At1g01860.html	-	-	-	-	PPDB	0.1988	-0.2418	-0.4057
ATTED:At1g01900.html	HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	TATATAT \| ATATATA \| TATATAT \| ATATATA \| TATATAT \| ATATATA	46 \| 47 \| 48 \| 49 \| 113 \| 236	0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	PPDB	0.9721	1.4745	1.5844
ATTED:At1g01920.html	HeptamerElement:TTAAACC \| HeptamerElement:AAAACCC \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAACCC	TTAAACC \| AAAACCC \| AAGCCCA \| AAAGCCC \| GCCCATA \| AGCCCAT \| AAGCCCA \| AAAACCC	4 \| 23 \| 73 \| 74 \| 83 \| 84 \| 85 \| 405	0.07 \| 0.09 \| 0.09 \| 0.06 \| 0.07 \| 0.08 \| 0.09 \| 0.09	PPDB	-0.1721	-0.3625	-0.2565
ATTED:At1g01930.html	HeptamerElement:ATGGGCC \| HeptamerElement:TATGGGC \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TATTGGG \| HeptamerElement:GCCGCCT	ATGGGCC \| TATGGGC \| GGGCCTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TATTGGG \| GCCGCCT	84 \| 85 \| 93 \| 94 \| 95 \| 96 \| 97 \| 109	0.08 \| 0.06 \| 0.06 \| 0.10 \| 0.09 \| 0.09 \| 0.06 \| 0.07	PPDB	-0.3972	-0.1433	-0.2226
ATTED:At1g01940.html	HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT	GCCCAAT \| GGCCCAA \| AGGCCCA \| AAGGCCC \| GCCCATA \| GGCCCAT	111 \| 112 \| 113 \| 114 \| 122 \| 123	0.07 \| 0.08 \| 0.11 \| 0.08 \| 0.07 \| 0.10	PPDB	0.1452	-0.2963	-0.0687
ATTED:At1g01950.html	HeptamerElement:AAAATAT \| HeptamerElement:CTCTCTT	AAAATAT \| CTCTCTT	20 \| 169	0.07 \| 0.06	PPDB	-0.0804	-0.2789	0.1221
ATTED:At1g01970.html	HeptamerElement:TCTCTAG \| HeptamerElement:GCCCATA \| HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:ATGGGCC \| HeptamerElement:AATGGGC	TCTCTAG \| GCCCATA \| GGCCCAT \| AGGCCCA \| AAGGCCC \| GCCCAAT \| GGCCCAA \| AGGCCCA \| ATGGGCC \| AATGGGC	104 \| 120 \| 121 \| 122 \| 123 \| 138 \| 139 \| 140 \| 160 \| 161	0.06 \| 0.07 \| 0.10 \| 0.10 \| 0.08 \| 0.07 \| 0.07 \| 0.10 \| 0.07 \| 0.07	PPDB	0.0379	-0.1376	0.0842
ATTED:At1g01990.html	HeptamerElement:CTCTCTT \| HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT	CTCTCTT \| CCCATTA \| GCCCATT \| AGCCCAT \| TGGGCTT \| TGGGCTT \| ATGGGCT	37 \| 61 \| 62 \| 63 \| 74 \| 123 \| 124	0.06 \| 0.07 \| 0.10 \| 0.09 \| 0.06 \| 0.06 \| 0.06	PPDB	-0.0594	0.2096	-0.1071
ATTED:At1g02020.html	HeptamerElement:TGCCGAC	TGCCGAC	118	0.08	PPDB	-0.2676	0.0473	-0.1665
ATTED:At1g02050.html	-	-	-	-	TAIR9	-0.4228	-0.3412	-0.7046
ATTED:At1g02060.html	HeptamerElement:AGGGTTT \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:TCTAGAA \| HeptamerElement:GGGCCTA \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:AGGGTTT	AGGGTTT \| TGGGCCT \| TTGGGCC \| ATTGGGC \| GCCCATT \| AGCCCAT \| TCTAGAA \| GGGCCTA \| TGGGCCT \| TTGGGCC \| ATTGGGC \| AGGGTTT	12 \| 44 \| 45 \| 46 \| 56 \| 57 \| 72 \| 90 \| 91 \| 92 \| 93 \| 269	0.10 \| 0.09 \| 0.08 \| 0.08 \| 0.10 \| 0.08 \| 0.11 \| 0.06 \| 0.09 \| 0.08 \| 0.08 \| 0.10	PPDB	-0.1936	-0.0313	-0.0994
ATTED:At1g02070.html	HeptamerElement:ATAAATA \| HeptamerElement:TATAAAT \| HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ATATATA	ATAAATA \| TATAAAT \| ATATAAA \| TATATAA \| ATATATA \| TATATAT \| ATATATA \| ATATATA \| TATATAT \| ATATATA	6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12 \| 28 \| 29 \| 30	0.09 \| 0.10 \| 0.09 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10 \| 0.10	TAIR9	-0.4803	3.7902	3.3700
ATTED:At1g02080.html	HeptamerElement:AACCCTA	AACCCTA	436	0.10	PPDB	-0.4826	0.2695	0.0178
ATTED:At1g02090.html	HeptamerElement:ATATAAA \| HeptamerElement:GTCGGTC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:CGCGGTT \| HeptamerElement:ACGCGGT \| HeptamerElement:AGCCCAA	ATATAAA \| GTCGGTC \| TCTAGAA \| TTCTAGA \| GCCCAAT \| AGCCCAA \| CGCGGTT \| ACGCGGT \| AGCCCAA	26 \| 50 \| 64 \| 65 \| 84 \| 85 \| 139 \| 140 \| 492	0.09 \| 0.06 \| 0.12 \| 0.09 \| 0.07 \| 0.07 \| 0.07 \| 0.09 \| 0.07	PPDB	-0.5500	-0.6592	-0.4328
ATTED:At1g02100.html	HeptamerElement:TTGGGCT \| HeptamerElement:ATTGGGC \| HeptamerElement:TCTAGAA \| HeptamerElement:TTCTAGA \| HeptamerElement:CTTCTAG	TTGGGCT \| ATTGGGC \| TCTAGAA \| TTCTAGA \| CTTCTAG	138 \| 139 \| 158 \| 159 \| 160	0.07 \| 0.08 \| 0.10 \| 0.10 \| 0.08	PPDB	0.0198	0.5745	0.1564
ATTED:At1g02120.html	HeptamerElement:GGCCCAA	GGCCCAA	176	0.07	TAIR9	0.0926	0.9126	0.6500
ATTED:At1g02130.html	HeptamerElement:GGCCCAA \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC \| HeptamerElement:TGGGCCT \| HeptamerElement:TTGGGCC \| HeptamerElement:ATTGGGC	GGCCCAA \| AGGCCCA \| AAGGCCC \| TGGGCCT \| TTGGGCC \| ATTGGGC \| TGGGCCT \| TTGGGCC \| ATTGGGC	52 \| 53 \| 54 \| 79 \| 80 \| 81 \| 190 \| 191 \| 192	0.07 \| 0.10 \| 0.07 \| 0.09 \| 0.08 \| 0.08 \| 0.09 \| 0.08 \| 0.08	PPDB	-0.3975	0.0444	0.0185
ATTED:At1g02140.html	HeptamerElement:CCCATTA \| HeptamerElement:GCCCATT \| HeptamerElement:AGCCCAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GCCCAAT \| HeptamerElement:GGCCCAA \| HeptamerElement:GGGCCTT \| HeptamerElement:TGGGCCT \| HeptamerElement:GTCGGCA	CCCATTA \| GCCCATT \| AGCCCAT \| AAGCCCA \| GCCCAAT \| GGCCCAA \| GGGCCTT \| TGGGCCT \| GTCGGCA	64 \| 65 \| 66 \| 67 \| 78 \| 79 \| 112 \| 113 \| 198	0.06 \| 0.09 \| 0.07 \| 0.08 \| 0.07 \| 0.08 \| 0.07 \| 0.10 \| 0.06	PPDB	-0.2125	-0.1076	0.0825
ATTED:At1g02160.html	HeptamerElement:GGCCCAT \| HeptamerElement:AGGCCCA \| HeptamerElement:AAGGCCC \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:AAGGCCC \| HeptamerElement:TTGGGCC \| HeptamerElement:AGGCCCA	GGCCCAT \| AGGCCCA \| AAGGCCC \| TATATAA \| ATATATA \| AAGGCCC \| TTGGGCC \| AGGCCCA	8 \| 9 \| 10 \| 31 \| 32 \| 47 \| 64 \| 538	0.09 \| 0.10 \| 0.08 \| 0.10 \| 0.08 \| 0.08 \| 0.09 \| 0.10	PPDB	-0.1264	0.3364	0.2760
ATTED:At1g02180.html	HeptamerElement:GCCCAAT \| HeptamerElement:AGCCCAA \| HeptamerElement:AAGCCCA \| HeptamerElement:AAAGCCC \| HeptamerElement:AGCCCAA	GCCCAAT \| AGCCCAA \| AAGCCCA \| AAAGCCC \| AGCCCAA	69 \| 70 \| 71 \| 72 \| 88	0.07 \| 0.07 \| 0.09 \| 0.06 \| 0.07	PPDB	-0.1704	-0.8095	-0.1753
ATTED:At1g02190.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:CTCTATA	TATATAA \| CTATATA \| TCTATAT \| CTCTATA	28 \| 29 \| 30 \| 31	0.11 \| 0.13 \| 0.10 \| 0.10	PPDB	-1.8578	-1.6957	-1.9238
ATTED:At1g02205.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TATAAAC \| HeptamerElement:ATATAAA \| HeptamerElement:ATATCTA	TATATAA \| CTATATA \| TATAAAC \| ATATAAA \| ATATCTA	34 \| 35 \| 46 \| 47 \| 70	0.11 \| 0.13 \| 0.07 \| 0.08 \| 0.06	PPDB	-3.4623	2.2301	1.7616
ATTED:At1g02260.html	HeptamerElement:CGTGGCA \| HeptamerElement:ACGTGGC	CGTGGCA \| ACGTGGC	46 \| 47	0.08 \| 0.09	PPDB	-0.2026	-0.0370	-0.4101
ATTED:At1g02270.html	HeptamerElement:GATATTT \| HeptamerElement:AGATATT	GATATTT \| AGATATT	126 \| 127	0.09 \| 0.09	PPDB	0.5684	-0.1447	-0.0311
ATTED:At1g02280.html	HeptamerElement:GATAAGG	GATAAGG	15	0.07	PPDB	0.6285	-0.7213	-0.8838
ATTED:At1g02310.html	HeptamerElement:CCACACA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA	CCACACA \| TATATAA \| ATATATA \| TATATAT \| ACGCGTT \| TATATAA \| ATATATA	25 \| 34 \| 35 \| 36 \| 131 \| 541 \| 542	0.06 \| 0.11 \| 0.10 \| 0.10 \| 0.10 \| 0.11 \| 0.10	PPDB	-0.6234	-0.1786	-0.0019
ATTED:At1g02330.html	HeptamerElement:GGCCCAT \| HeptamerElement:TGGGCTT \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:ATGGGCT \| HeptamerElement:AATGGGC \| HeptamerElement:TGGGCCT	GGCCCAT \| TGGGCTT \| ATGGGCT \| AATGGGC \| ATGGGCT \| AATGGGC \| TGGGCCT	90 \| 105 \| 106 \| 107 \| 179 \| 180 \| 199	0.08 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07 \| 0.07	PPDB	-0.1454	-0.1436	0.1185
ATTED:At1g02340.html	HeptamerElement:CCACACA	CCACACA	114	0.06	PPDB	-1.5366	-1.3058	-1.4327
ATTED:At1g02360.html	HeptamerElement:TATATAA \| HeptamerElement:CTATATA \| HeptamerElement:TCTATAT \| HeptamerElement:ACGCGTT \| HeptamerElement:AACGCGT \| HeptamerElement:TCTATAT	TATATAA \| CTATATA \| TCTATAT \| ACGCGTT \| AACGCGT \| TCTATAT	30 \| 31 \| 32 \| 52 \| 53 \| 416	0.11 \| 0.13 \| 0.10 \| 0.10 \| 0.07 \| 0.10	PPDB	-0.2492	-0.9454	-0.9688
ATTED:At1g02370.html	HeptamerElement:AACCCTA \| HeptamerElement:AAACCCT \| HeptamerElement:TAAACCC \| HeptamerElement:TTAAACC	AACCCTA \| AAACCCT \| TAAACCC \| TTAAACC	31 \| 32 \| 33 \| 34	0.11 \| 0.12 \| 0.08 \| 0.06	PPDB	-0.6688	-1.0240	-0.9592
ATTED:At1g02390.html	HeptamerElement:TATATAA \| HeptamerElement:AAATATC \| HeptamerElement:CATGCAA \| HeptamerElement:ACGCGTA \| HeptamerElement:GACGCGT \| HeptamerElement:AAATATC	TATATAA \| AAATATC \| CATGCAA \| ACGCGTA \| GACGCGT \| AAATATC	28 \| 71 \| 122 \| 172 \| 173 \| 180	0.11 \| 0.07 \| 0.07 \| 0.10 \| 0.06 \| 0.07	PPDB	-1.0314	-0.8899	-0.9332
ATTED:At1g02400.html	HeptamerElement:AATAATT \| HeptamerElement:AATAATT	AATAATT \| AATAATT	236 \| 332	0.06 \| 0.06	PPDB	1.4459	-0.4023	-0.7356
ATTED:At1g02410.html	HeptamerElement:TTGACTT \| HeptamerElement:TTGACTT \| HeptamerElement:TTTGACT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT \| HeptamerElement:TGGGCTT \| HeptamerElement:AATAATT \| HeptamerElement:TGGGCTT	TTGACTT \| TTGACTT \| TTTGACT \| AATAATT \| TGGGCTT \| TGGGCTT \| AATAATT \| TGGGCTT	40 \| 48 \| 49 \| 113 \| 149 \| 173 \| 307 \| 412	0.08 \| 0.08 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06 \| 0.06	PPDB	-0.1910	-0.1862	-0.0393
ATTED:At1g02450.html	HeptamerElement:AAATATC \| HeptamerElement:AAATATC	AAATATC \| AAATATC	165 \| 187	0.07 \| 0.07	PPDB	-0.1527	-0.2384	0.6661
ATTED:At1g02460.html	HeptamerElement:ATATAAA \| HeptamerElement:TATATAA \| HeptamerElement:ATATATA \| HeptamerElement:TATATAT \| HeptamerElement:AAGCCCA \| HeptamerElement:GATATTT	ATATAAA \| TATATAA \| ATATATA \| TATATAT \| AAGCCCA \| GATATTT	47 \| 48 \| 49 \| 50 \| 68 \| 126	0.08 \| 0.10 \| 0.09 \| 0.10 \| 0.09 \| 0.09	TAIR9	-0.1305	-0.0606	-0.1484
ATTED:At1g02470.html	HeptamerElement:AAAGTCA	AAAGTCA	164	0.07	TAIR9	-1.1332	-0.7351	-0.9784
ATTED:At1g02475.html	-	-	-	-	PPDB	0.6385	0.8293	0.4780

* Row count is limited to 100.

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Linkdata Work Information

Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median