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Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_ATTED_Flowering_median	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median	This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements	A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.

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File Name
AtGenExpress_ATTED_Flowering_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.29	4.5MB
Table Data (Excel)	2013.4.29	8.1MB
RDF (Turtle)	2013.4.29	35.3MB
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AtGenExpress_ATTED_Fruit_Seeds_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	2.7MB
Table Data (Excel)	2013.4.30	4.5MB
RDF (Turtle)	2013.4.30	13.8MB
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AtGenExpress_ATTED_Leaf_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	3.3MB
Table Data (Excel)	2013.4.30	5.7MB
RDF (Turtle)	2013.4.30	21.3MB
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AtGenExpress_ATTED_Root_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	2.5MB
Table Data (Excel)	2013.4.30	4.1MB
RDF (Turtle)	2013.4.30	12.3MB
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AtGenExpress_ATTED_Seedling_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	3.0MB
Table Data (Excel)	2013.4.30	5.1MB
RDF (Turtle)	2013.4.30	17.7MB
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AtGenExpress_ATTED_Stem_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	2.3MB
Table Data (Excel)	2013.4.30	3.6MB
RDF (Turtle)	2013.4.30	9.4MB
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AtGenExpress_ATTED_Whole_Plant_median			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.30	2.3MB
Table Data (Excel)	2013.4.30	3.5MB
RDF (Turtle)	2013.4.30	9.4MB
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Heptamer_elements			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.2.25	12.4KB
Table Data (Excel)	2013.2.25	51.5KB
RDF (Turtle)	2013.2.25	134.9KB
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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://atted.jp/ http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/171... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	871
Created date	Feb 7, 2013
Last update date	May 1, 2013

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Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

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