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Developmental Coexpression (AtGenExpress gene expression + ATTED-II promoter motif) median

Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant organs (Flower, Leaf, Root, Stem, Fruit & Seeds), with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days). Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101


Descriptions for each data table:
AtGenExpress_ATTED_Flowering_median
This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_ATTED_Fruit_Seeds_median
This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_ATTED_Leaf_median
This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_ATTED_Root_median
This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_ATTED_Seedling_median
This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_ATTED_Stem_median
This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_ATTED_Whole_Plant_median
This collection of Gene Expression Properties are associated with whole plant body parts.
Heptamer_elements A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value.
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File Name
AtGenExpress_ATTED_Flowering_median
Table Data (Text)
2013.4.29
4.5MB
Table Data (Excel)
2013.4.29
8.1MB
RDF (Turtle)
2013.4.29
35.3MB
AtGenExpress_ATTED_Fruit_Seeds_median
Table Data (Text)
2013.4.30
2.7MB
Table Data (Excel)
2013.4.30
4.5MB
RDF (Turtle)
2013.4.30
13.8MB
AtGenExpress_ATTED_Leaf_median
Table Data (Text)
2013.4.30
3.3MB
Table Data (Excel)
2013.4.30
5.7MB
RDF (Turtle)
2013.4.30
21.3MB
AtGenExpress_ATTED_Root_median
Table Data (Text)
2013.4.30
2.5MB
Table Data (Excel)
2013.4.30
4.1MB
RDF (Turtle)
2013.4.30
12.3MB
AtGenExpress_ATTED_Seedling_median
Table Data (Text)
2013.4.30
3.0MB
Table Data (Excel)
2013.4.30
5.1MB
RDF (Turtle)
2013.4.30
17.7MB
AtGenExpress_ATTED_Stem_median
Table Data (Text)
2013.4.30
2.3MB
Table Data (Excel)
2013.4.30
3.6MB
RDF (Turtle)
2013.4.30
9.4MB
AtGenExpress_ATTED_Whole_Plant_median
Table Data (Text)
2013.4.30
2.3MB
Table Data (Excel)
2013.4.30
3.5MB
RDF (Turtle)
2013.4.30
9.4MB
Heptamer_elements
Table Data (Text)
2013.2.25
12.4KB
Table Data (Excel)
2013.2.25
51.5KB
RDF (Turtle)
2013.2.25
134.9KB
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Total downloads 395
Created date Feb 7, 2013
Last update date May 1, 2013

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