DIURNAL gene expression + PLACE promoter motif

Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293

Descriptions for each data table:

DiurnalHours_PLACE_COL_LDHH	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD	This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13	This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8	This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX	This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC	This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD	This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday	This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH	This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD	This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday	This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.

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DiurnalHours_PLACE_COL_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.5MB
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DiurnalHours_PLACE_COL_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.0MB
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DiurnalHours_PLACE_DD_DDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
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DiurnalHours_PLACE_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.1MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	45.4MB
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DiurnalHours_PLACE_LDHH_SM			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
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DiurnalHours_PLACE_LDHH_ST			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
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DiurnalHours_PLACE_LER_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.0MB
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DiurnalHours_PLACE_LIGHT5_HIF138_13			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.4MB
Table Data (Excel)	2013.4.11	14.5MB
RDF (Turtle)	2013.4.11	48.7MB
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DiurnalHours_PLACE_LIGHT5_HIF138_8			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.3MB
Table Data (Excel)	2013.4.11	14.5MB
RDF (Turtle)	2013.4.11	48.5MB
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DiurnalHours_PLACE_LIGHT5_znknOX			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.3MB
Table Data (Excel)	2013.4.11	14.5MB
RDF (Turtle)	2013.4.11	47.9MB
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DiurnalHours_PLACE_LL12_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.8MB
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DiurnalHours_PLACE_LL23_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.8MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.1MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	45.4MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_LL_LDHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_LL_LLHC			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_lhyox_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.5MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_longday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.3MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_lux_2_LDHH			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.3MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	47.1MB
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DiurnalHours_PLACE_phyB9_SD			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.8MB
RDF (Turtle)	2013.4.11	46.5MB
		その他の形式のAPIリストを表示
DiurnalHours_PLACE_shortday			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.4.11	8.2MB
Table Data (Excel)	2013.4.11	15.9MB
RDF (Turtle)	2013.4.11	46.5MB
		その他の形式のAPIリストを表示

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Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://www.dna.affrc.go.jp/PLACE/
Reference	http://www.ncbi.nlm.nih.gov/pubmed/984...
Total downloads	1172
Created date	Apr 11, 2013
Last update date	Apr 25, 2013

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DIURNAL gene expression + PLACE promoter motif

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