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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LDHH_ST
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LDHH_ST_0_hours label:LDHH_ST_4_hours label:LDHH_ST_8_hours label:LDHH_ST_12_hours label:LDHH_ST_16_hours label:LDHH_ST_20_hours label:LDHH_ST_24_hours label:LDHH_ST_28_hours label:LDHH_ST_32_hours label:LDHH_ST_36_hours label:LDHH_ST_40_hours label:LDHH_ST_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LDHH_ST 16 0.411258 9.479050 8.822860 8.852450 8.342680 12.099500 8.353530 8.709350 7.916220 5.916460 7.151180 7.280760 6.808790 14.057656 0.255135
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LDHH_ST 22 0.644395 5.502870 6.197790 5.668820 5.817200 7.301800 6.231550 7.915180 6.153320 5.637210 5.757100 5.312830 6.195050 16.145848 0.214087
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LDHH_ST 17 0.319002 51.302400 73.763700 61.688400 107.072000 108.730000 71.122700 46.699100 29.270900 26.236900 21.521900 17.864000 24.725700 3.642136 3.925284
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LDHH_ST 2 0.759064 7.950280 7.145550 7.368740 7.182800 6.670690 5.731780 8.257320 8.451960 6.248750 7.217290 6.456450 6.592400 21.578675 0.337114
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LDHH_ST 0 0.428671 4.701990 4.891330 4.622530 4.640540 4.878570 4.956920 4.683290 4.457030 4.756710 4.588120 3.636550 3.722190 23.363996 0.112213
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LDHH_ST 18 0.651840 7.640000 5.068080 5.775580 7.674730 6.809720 6.263840 7.303770 5.508250 5.415230 6.530900 4.840110 7.917940 13.715839 0.325633
TAIR:ATMG00710 - - - - TAIR9 244907_at LDHH_ST 17 0.518758 4.281650 4.961810 5.020200 4.184530 5.135800 5.393200 4.438640 4.649440 4.098980 4.987970 5.203960 4.310000 1.651209 0.104320
TAIR:ATMG00720 - - - - TAIR9 244908_at LDHH_ST 4 0.571766 4.758060 5.539410 4.822710 4.903470 4.483980 4.467950 4.791570 4.560430 4.799800 3.724670 4.642430 4.206700 22.045714 0.159020
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LDHH_ST 12 0.560719 3.798010 3.883710 4.565550 4.744070 4.686400 4.094670 3.903250 4.240210 3.845640 3.851730 4.143520 3.567840 5.912965 0.135192
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LDHH_ST 8 0.721559 4.255170 4.516030 6.231760 4.211020 4.148530 4.213150 4.285510 4.827100 4.435260 4.687460 4.303810 3.331670 1.531755 0.314569
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LDHH_ST 1 0.399108 49.245800 26.506200 20.503600 31.985300 26.984900 17.617400 55.824800 63.887900 64.004400 67.293300 36.044500 56.967400 22.386664 2.950295
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LDHH_ST 8 0.777720 4.338940 4.486380 4.655710 5.026160 4.274820 4.121750 4.434300 4.942350 4.458810 4.219640 3.725390 3.698400 0.650457 0.199392
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LDHH_ST 21 0.503144 5.056330 5.347650 4.787500 5.322480 4.988920 4.937670 5.833260 6.071850 5.063120 5.232410 6.066150 6.041390 15.902231 0.105628
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LDHH_ST 5 0.835395 4.017260 4.725970 4.588820 4.081360 4.178040 4.378220 3.961080 4.714040 4.305520 4.317830 4.286820 3.999190 0.562683 0.108861
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LDHH_ST 6 0.823826 3.608120 4.443970 4.166440 3.553760 3.266310 3.229450 3.178160 4.055740 3.663650 2.903010 2.823070 2.360700 23.608047 0.337379
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LDHH_ST 17 0.534729 3.135210 3.126190 3.908670 4.039430 3.949700 4.139140 4.286950 3.904040 3.392920 4.354730 3.759130 3.901900 2.498523 0.128957
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LDHH_ST 10 0.835886 3.795030 3.869900 4.562560 4.421410 4.085380 3.778290 4.218310 5.148760 4.444970 4.354230 3.878150 3.843090 10.420399 0.192403
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LDHH_ST 0 0.685880 112.570000 45.091600 24.870000 47.800500 43.209200 53.105400 51.961200 42.674700 50.471700 58.174800 42.107700 47.287500 19.009819 6.242394
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LDHH_ST 20 0.728635 86.197800 36.971600 28.108100 30.873600 40.831900 51.573300 42.183900 35.775400 29.401400 29.930800 56.011100 38.028600 15.719346 7.212501
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LDHH_ST 21 0.718083 8.460520 6.336300 5.408930 6.400010 5.338450 6.273730 7.539300 6.122140 5.666170 6.452780 7.888130 9.223820 15.193054 0.558701
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LDHH_ST 0 0.653965 5.681360 5.998800 4.790820 5.401420 5.625050 6.123400 6.448640 6.321100 6.072450 5.894150 5.647910 6.720000 19.266226 0.206930
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LDHH_ST 6 0.590408 5.811750 7.171640 7.564230 6.439420 6.654450 6.557940 6.449830 6.497830 6.184310 5.698580 5.865970 5.326380 0.341608 0.218337
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LDHH_ST 12 0.641240 15.712300 14.678000 15.367900 17.381900 13.012400 15.060800 14.193900 13.348600 13.239900 15.273700 13.050600 13.811700 8.798587 0.183309
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LDHH_ST 19 0.694808 3.039360 3.237200 3.354420 3.167050 3.304760 3.639690 3.378850 3.566820 3.348120 3.234050 3.714700 3.712210 13.157059 0.065389
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LDHH_ST 8 0.682750 5.010810 8.051460 6.511490 5.695140 5.799980 5.560140 5.875760 5.994260 6.517160 7.080150 5.364100 5.723570 1.215933 0.351557
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LDHH_ST 5 0.724892 6.145790 7.694760 6.908020 5.539230 5.604390 5.689040 6.151890 5.986380 6.677740 4.299710 6.089890 6.518960 14.898726 0.334646
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LDHH_ST 0 0.615823 191.531000 165.178000 120.485000 144.443000 180.617000 141.520000 186.372000 174.010000 186.756000 138.434000 129.153000 177.846000 18.491280 9.730160
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LDHH_ST 17 0.852895 3.408630 3.768700 3.408220 3.348810 4.203940 3.653050 3.411130 3.562080 3.533280 3.502800 4.005990 4.020130 11.711447 0.116584
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LDHH_ST 8 0.715693 5.396600 5.251210 6.334480 5.672810 4.956330 5.806510 4.921600 5.684520 6.222450 5.332830 5.998000 5.321160 3.274725 0.155555
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LDHH_ST 2 0.316125 174.367000 176.951000 17.175300 94.735800 28.373800 130.139000 239.467000 246.300000 425.113000 287.371000 288.592000 291.886000 21.713856 11.054374
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LDHH_ST 3 0.618674 407.127000 470.435000 61.796400 186.782000 71.637600 220.707000 229.439000 346.205000 519.079000 342.558000 426.247000 224.940000 22.210321 36.720868
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LDHH_ST 4 0.537035 108.753000 140.818000 26.537300 89.847000 26.258900 54.281600 39.941900 62.095200 157.467000 72.970800 90.479300 81.939600 23.833074 9.676832
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LDHH_ST 23 0.619818 7618.110000 7363.740000 6586.860000 6893.170000 8172.720000 7401.270000 8843.270000 7805.900000 7477.020000 7476.670000 7429.750000 6714.620000 17.169706 162.245475
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LDHH_ST 3 0.725281 4185.200000 5178.480000 4298.540000 3696.060000 4649.840000 4892.190000 5046.390000 5575.150000 4444.870000 3660.240000 4106.570000 3524.130000 20.440022 281.339022
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LDHH_ST 1 0.708403 323.969000 196.227000 99.064400 79.949300 100.000000 134.934000 460.649000 331.363000 278.511000 235.593000 299.998000 225.125000 18.898891 44.914061
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LDHH_ST 2 0.596901 539.503000 484.947000 395.734000 467.306000 540.861000 388.089000 469.090000 505.419000 454.922000 342.762000 342.491000 349.556000 20.950739 22.751505
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LDHH_ST 0 0.659160 2724.620000 2039.670000 1582.140000 1302.270000 1556.130000 1173.290000 2568.580000 2777.540000 2550.730000 1798.880000 2468.650000 1999.250000 20.383715 216.477663
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LDHH_ST 22 0.602905 7336.400000 6863.050000 6843.660000 5667.700000 6279.300000 7180.840000 6942.990000 6966.720000 6892.500000 6672.780000 7606.540000 6519.410000 17.964770 157.750043
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LDHH_ST 15 0.685386 6.851750 6.569230 7.483200 7.956270 7.516970 7.631590 6.705980 6.523960 5.867440 6.977390 6.974110 6.893970 9.751620 0.223248
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LDHH_ST 8 0.494656 3.856740 3.951970 4.744150 4.124820 3.822110 4.005280 4.913330 3.705010 4.251740 3.784530 4.028140 4.046880 13.613996 0.059383
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LDHH_ST 20 0.477298 10.975600 9.054690 8.165450 11.062400 12.192000 10.520800 9.024650 8.486060 7.319920 6.884200 8.216640 7.443270 22.541638 0.415796
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LDHH_ST 4 0.735985 5.472640 7.805820 6.122960 6.754320 6.886020 7.199720 6.017190 7.748280 5.826350 6.014420 6.868150 5.712310 23.463998 0.061020
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LDHH_ST 4 0.632519 3.430810 4.219490 3.395460 3.484600 3.583890 3.490980 3.409920 3.525650 3.668220 3.637950 3.554470 3.341400 0.492377 0.060989
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LDHH_ST 9 0.721821 5.887150 6.133700 7.136050 6.979940 6.167030 5.678210 6.166110 6.853390 5.742270 6.058400 5.606670 5.275950 1.750555 0.252488
TAIR:ATMG00150 - - - - TAIR9 244949_at LDHH_ST 17 0.458306 4.234100 5.050730 4.705250 5.138220 5.100600 5.278230 4.951210 5.065500 4.312810 4.113310 5.385480 4.302800 12.143389 0.067368
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LDHH_ST 20 0.751622 9.446730 8.794570 6.263940 5.461990 8.540880 9.727900 5.451780 6.886280 6.085940 7.942490 7.768830 7.598110 14.471613 0.506991
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LDHH_ST 13 0.352752 68.304100 65.741600 62.270700 126.032000 93.383200 70.815900 56.008000 40.251500 39.794200 34.902200 33.169600 38.592200 7.946936 4.127139
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LDHH_ST 18 0.523955 4.115740 4.455250 4.092980 3.852120 4.799990 4.620380 4.148950 5.487910 4.346670 4.649640 4.975390 5.354280 13.828112 0.111161
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LDHH_ST 4 0.342977 5.126580 5.608130 4.619200 4.162960 5.113250 4.410760 4.295250 4.498760 4.750410 4.793910 4.533440 5.063130 16.505521 0.067357
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LDHH_ST 18 0.681423 7.530250 5.486540 5.513580 6.816480 6.469890 6.081450 6.492040 6.334560 5.963410 6.654520 7.267080 8.218930 12.917307 0.352132
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LDHH_ST 20 0.692396 3.919290 3.318070 3.294910 3.353850 4.356700 3.441870 3.662750 3.470060 3.745160 3.487290 3.884070 4.071350 23.429070 0.140549
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LDHH_ST 20 0.870882 5.845980 5.641030 5.050980 5.110010 6.113190 6.462990 6.229270 6.228340 5.056260 5.763550 6.449270 6.691880 14.419439 0.334936
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LDHH_ST 8 0.572795 6.066420 7.721600 8.991620 6.626280 7.423980 7.756700 5.521800 5.521750 7.718790 6.066140 8.109770 6.288230 5.654572 0.299736
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LDHH_ST 16 0.344166 4.932610 4.789300 4.177950 5.309140 5.416760 4.666310 4.293790 4.209550 4.267880 4.015720 4.106040 4.276410 11.518701 0.074262
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LDHH_ST 3 0.606610 137.348000 116.334000 99.177800 73.942400 93.305000 81.038400 94.215800 62.409800 72.159100 35.304700 41.042200 30.860800 20.538175 12.151911
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LDHH_ST 0 0.350484 4143.230000 5209.280000 4738.190000 3608.990000 5254.270000 6000.650000 4395.540000 4703.920000 4120.830000 3376.820000 3648.210000 1943.930000 21.077285 192.628059
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LDHH_ST 0 0.690324 5042.490000 4718.940000 4402.760000 4884.450000 5098.740000 4609.150000 5629.280000 4681.910000 4945.630000 4278.570000 4753.550000 4382.620000 17.716592 92.313997
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LDHH_ST 23 0.514973 1410.780000 818.203000 415.879000 864.365000 921.711000 979.603000 1666.260000 1362.160000 1535.780000 1438.650000 943.342000 1415.760000 17.632940 96.573225
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LDHH_ST 1 0.661952 4741.220000 3352.800000 2937.250000 2403.970000 2575.330000 2978.470000 5763.310000 4695.370000 4089.000000 4435.900000 4505.570000 3936.030000 18.857489 349.812595
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LDHH_ST 1 0.661420 1007.050000 771.642000 407.718000 441.810000 421.108000 671.500000 1381.950000 998.216000 888.980000 955.724000 870.749000 944.733000 17.624158 116.415926
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LDHH_ST 0 0.269740 2069.220000 2110.770000 2031.820000 1717.970000 2350.580000 2251.280000 1522.000000 1483.650000 1380.960000 1175.210000 865.653000 575.614000 21.637419 85.396945
TAIR:ATCG00600 - - - - TAIR9 244966_at LDHH_ST 2 0.444709 129.261000 113.529000 18.971400 72.983100 20.764200 66.569800 107.911000 103.391000 155.755000 137.117000 135.128000 112.394000 20.632013 6.446085
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LDHH_ST 16 0.396169 6197.930000 7482.840000 6613.410000 6141.730000 7858.190000 7544.180000 6422.410000 6393.370000 5941.570000 5280.840000 6616.980000 4271.120000 18.865740 45.193331
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LDHH_ST 0 0.811674 3831.500000 2580.960000 2206.240000 2075.330000 2845.110000 3032.550000 4530.730000 3205.090000 2574.670000 2744.670000 3415.350000 2716.670000 19.216619 332.488156
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LDHH_ST 1 0.807338 2841.240000 2150.970000 1559.350000 1449.480000 2323.080000 2480.150000 3479.260000 2315.770000 1855.560000 1805.460000 2309.640000 1757.960000 18.944337 291.717231
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LDHH_ST 0 0.683703 640.042000 421.437000 260.965000 568.931000 424.046000 389.689000 579.569000 390.974000 532.179000 297.490000 395.216000 360.557000 18.362106 27.483026
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LDHH_ST 22 0.715780 2719.600000 2297.700000 1619.810000 2130.630000 2154.910000 2181.650000 2728.640000 2318.330000 2306.690000 2206.650000 2457.610000 2854.040000 16.008731 160.225944
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LDHH_ST 0 0.419414 287.817000 167.527000 33.293900 43.377600 27.112000 47.387500 760.416000 668.535000 659.927000 397.148000 542.149000 484.220000 19.955418 63.116506
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LDHH_ST 0 0.843028 586.612000 716.927000 242.586000 309.298000 340.058000 501.524000 809.999000 753.766000 774.035000 439.449000 433.835000 324.996000 20.696001 98.676337
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LDHH_ST 0 0.535028 155.985000 98.233900 49.517800 105.408000 118.433000 109.658000 104.087000 103.687000 121.998000 92.285000 58.578700 59.659600 19.177367 6.448452
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LDHH_ST 0 0.750531 3264.530000 3550.150000 2992.170000 2002.730000 2445.760000 3246.120000 4220.320000 4152.940000 3467.950000 3352.160000 3482.060000 2429.860000 20.678109 286.336003
TAIR:ATCG00720 - - - - PPDB 244976_at LDHH_ST 0 0.613743 6483.230000 6578.950000 6140.020000 5268.160000 5821.220000 6177.560000 6775.580000 6873.320000 6590.550000 6329.580000 6798.330000 6308.640000 19.700292 180.529220
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LDHH_ST 6 0.471508 6.194000 6.955730 4.727940 6.281990 3.838480 5.761450 4.503020 6.642770 9.625200 7.451950 7.972220 7.431150 3.122985 0.311089
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LDHH_ST 23 0.708369 7456.850000 6787.580000 5003.350000 6048.170000 6986.170000 9763.010000 9520.140000 9238.880000 8667.300000 6886.330000 8766.320000 8300.790000 16.051571 608.845372
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LDHH_ST 23 0.595437 7622.190000 5823.780000 4548.280000 4199.480000 5407.390000 7467.580000 8876.930000 8043.680000 7469.630000 7062.790000 7974.120000 6556.530000 17.234686 551.271804
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LDHH_ST 0 0.711359 3601.270000 3376.490000 1854.620000 1813.720000 2454.140000 3600.010000 4387.300000 3812.760000 3383.160000 3340.100000 4163.640000 4661.680000 19.642030 424.675913
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LDHH_ST 0 0.602700 3048.760000 2555.230000 1745.100000 1470.750000 1740.350000 2747.710000 3973.820000 3196.130000 3130.850000 2751.560000 3378.100000 2929.910000 17.841386 293.382908
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LDHH_ST 23 0.418599 2083.890000 1466.490000 805.088000 534.311000 967.344000 1561.290000 3097.980000 2532.230000 2676.230000 2278.140000 2962.490000 2839.490000 17.038280 246.401526
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LDHH_ST 3 0.526414 4623.440000 5353.480000 4040.710000 4429.580000 4061.710000 4617.240000 3785.080000 4074.290000 3585.570000 2864.740000 2967.920000 2894.370000 20.931252 261.205848
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LDHH_ST 23 0.459795 4730.750000 6050.420000 5038.790000 4383.200000 5500.060000 6920.580000 5710.090000 6646.120000 5565.230000 5157.550000 6343.160000 4281.870000 18.515414 136.740043
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LDHH_ST 22 0.581138 4565.980000 5248.550000 3199.650000 3515.360000 4338.160000 5936.350000 5544.820000 5913.970000 5276.570000 5060.910000 6897.010000 5527.260000 20.768859 333.066030
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LDHH_ST 23 0.657199 6615.030000 6245.700000 5329.930000 5890.480000 5914.500000 6370.300000 6915.490000 6245.700000 6412.130000 5043.030000 7406.700000 6478.650000 20.100886 267.399219
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LDHH_ST 21 0.710317 8788.910000 7350.230000 6771.980000 7585.400000 7591.050000 7628.730000 8705.610000 7623.190000 7959.220000 7589.390000 8515.580000 9007.300000 15.053335 314.490461
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LDHH_ST 23 0.688285 5137.380000 3932.580000 4081.930000 3700.640000 4088.640000 4723.920000 5073.590000 4627.240000 4473.010000 4769.200000 4733.270000 4432.830000 19.425368 171.018703
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LDHH_ST 3 0.458310 12.756500 12.522000 7.191450 9.504160 7.887270 9.649420 9.014090 10.523000 13.379000 11.302100 11.541500 11.644900 15.424647 0.334359
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LDHH_ST 2 0.439841 31.057800 37.158900 13.549700 19.306700 13.025900 31.462700 16.226700 35.576200 43.721900 26.475200 32.211700 32.325800 20.964587 2.161455
* Row count is limited to 100.