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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LER_SD
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LER_SD_0_hours label:LER_SD_4_hours label:LER_SD_8_hours label:LER_SD_12_hours label:LER_SD_16_hours label:LER_SD_20_hours label:LER_SD_24_hours label:LER_SD_28_hours label:LER_SD_32_hours label:LER_SD_36_hours label:LER_SD_40_hours label:LER_SD_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LER_SD 16 0.958800 5.180540 5.205610 4.285420 8.585270 7.696770 7.821870 5.621920 5.557530 4.548330 7.850090 7.726630 7.616280 10.297543 0.900975
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LER_SD 17 0.907092 6.178140 5.288080 6.055320 6.811830 6.362730 7.134720 6.749960 5.047960 6.289980 6.625400 6.964690 7.105190 11.064533 0.363461
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LER_SD 20 0.746037 6.844600 7.568500 6.270520 7.802230 7.676800 7.580960 6.209670 7.272820 5.853140 7.459240 7.308520 7.337510 1.273977 0.224459
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LER_SD 9 0.966572 7.005140 6.658610 10.681700 7.239650 6.049600 6.658410 6.513460 6.996280 9.747680 7.729240 6.580190 6.783540 2.170888 0.686114
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LER_SD 8 0.853443 3.358240 3.275700 3.919100 3.605910 3.532380 3.206040 3.562160 3.559140 4.024000 3.318640 3.477580 3.482900 2.504476 0.098245
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LER_SD 16 0.858511 5.397870 6.416440 4.603900 8.822490 8.304890 7.788690 5.886340 6.470860 4.220890 9.318470 7.748700 7.073600 9.718606 0.803297
TAIR:ATMG00710 - - - - TAIR9 244907_at LER_SD 9 0.767882 4.146260 3.879730 4.712370 4.288190 3.315810 3.594280 4.438760 3.867250 5.043960 3.933300 3.220350 3.953190 11.825370 0.247052
TAIR:ATMG00720 - - - - TAIR9 244908_at LER_SD 1 0.858033 4.081420 3.759370 3.794500 3.602470 3.522850 3.708180 3.929450 3.737710 3.586480 3.574230 3.719300 3.699680 18.763340 0.082906
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LER_SD 8 0.894928 2.608250 2.723470 3.353930 2.727030 2.845140 2.866190 2.531640 2.543040 3.456490 2.771220 2.853750 2.932510 4.339379 0.099269
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LER_SD 8 0.935295 4.360450 4.096470 5.313190 4.075610 3.971380 4.040170 4.285750 4.475190 5.786140 3.831300 4.166860 4.312790 11.425697 0.232100
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LER_SD 21 0.895174 70.190600 65.569500 38.611400 51.504100 79.434100 76.152700 64.278300 71.679400 35.273900 53.087600 86.057500 83.465200 14.047099 9.566773
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LER_SD 20 0.638922 3.705430 3.448830 3.113940 3.470260 3.527550 3.238870 3.841990 3.558930 3.120800 3.713580 3.703060 3.158780 14.997323 0.039344
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LER_SD 9 0.970312 4.446420 4.444270 9.560080 5.325200 3.603390 4.057980 4.573490 4.105720 8.646710 4.906310 3.312870 3.917750 1.880215 0.971621
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LER_SD 4 0.888521 5.510670 4.921670 4.912990 4.502610 4.360770 4.149930 5.290530 5.398390 5.150280 4.677980 4.378510 4.525410 21.750861 0.257635
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LER_SD 9 0.900891 3.190000 3.043320 4.360360 3.663950 3.485070 3.577340 3.239160 3.192300 4.168070 3.934050 3.264910 3.529350 4.653976 0.189733
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LER_SD 1 0.805230 4.219130 3.595820 3.485120 3.767340 3.664620 3.509510 3.895630 3.765590 3.506990 3.589730 3.479960 3.225220 19.940941 0.070338
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LER_SD 16 0.935859 4.400830 4.286070 4.132720 4.426520 4.723410 4.431150 3.962440 4.178010 4.480300 4.728130 4.375220 4.061930 4.608348 0.104227
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LER_SD 4 0.792457 33.316100 43.205000 34.722000 34.261600 37.416200 32.568400 34.527200 44.960900 37.198800 31.755000 40.875000 30.443100 23.461334 1.369211
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LER_SD 22 0.752354 21.662700 29.134100 17.862400 20.266600 24.980100 24.209000 20.394100 28.223200 18.031600 20.196200 24.285200 25.208700 16.615226 1.105332
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LER_SD 9 0.843793 5.882070 4.743260 7.048640 5.933550 5.221830 4.681560 6.264330 4.710940 7.347640 5.678900 5.355520 4.785720 2.472897 0.344340
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LER_SD 9 0.983504 7.186090 7.362330 12.840000 10.039000 7.317460 6.692060 6.654350 7.032670 13.386200 9.054560 7.709970 6.638250 3.235389 1.336479
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LER_SD 15 0.956513 4.249990 4.072700 4.076870 4.527020 5.350390 4.276580 4.235070 3.812790 3.844870 4.553090 5.696520 4.245400 10.004567 0.313256
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LER_SD 8 0.949736 16.964800 12.729500 26.130600 13.877200 12.976300 16.173100 16.155100 13.813000 26.159000 14.370600 11.944900 15.194600 11.083157 1.674934
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LER_SD 4 0.783998 3.043880 3.414660 3.217720 3.132170 2.959860 3.278930 3.275210 3.362760 3.235020 3.382960 2.695290 3.541990 14.670787 0.071107
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LER_SD 21 0.961435 4.484280 4.450160 3.506450 4.304900 4.562020 4.647430 4.725760 4.341420 3.284160 4.208220 4.650150 4.756180 14.287653 0.265064
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LER_SD 23 0.898158 7.011620 5.720820 4.572010 4.667720 5.925170 5.666910 7.421470 5.693150 4.621880 4.592130 5.749480 5.869380 19.329308 0.550865
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LER_SD 19 0.968397 200.114000 170.531000 139.753000 184.133000 219.088000 269.063000 195.499000 169.999000 134.999000 191.037000 219.395000 274.341000 13.228593 27.887606
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LER_SD 8 0.746030 3.551290 3.200180 3.959300 2.929120 3.392090 2.871630 3.359690 3.177110 3.826110 2.776510 3.225890 2.619570 11.866673 0.148290
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LER_SD 9 0.929131 4.023140 3.498520 5.670510 4.000930 3.061680 3.952010 3.845770 3.531210 5.581870 4.380040 3.258310 3.964620 10.165586 0.329197
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LER_SD 20 0.793833 814.314000 995.109000 671.612000 940.354000 909.141000 848.833000 792.836000 1016.070000 639.095000 981.703000 859.330000 838.222000 0.177400 9.655044
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LER_SD 21 0.977787 539.864000 551.527000 337.359000 492.882000 544.398000 581.597000 557.480000 558.208000 349.404000 455.233000 585.539000 533.433000 14.819235 43.750954
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LER_SD 20 0.704479 83.405500 58.642900 48.510100 54.934400 81.448400 59.974700 77.558100 63.302500 51.389000 57.559700 79.147300 54.791500 14.552059 4.920215
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LER_SD 22 0.776431 6034.970000 5698.280000 5492.000000 5598.980000 5828.290000 6257.600000 6119.570000 6127.700000 5800.830000 5438.010000 6199.590000 5867.600000 15.865899 140.810123
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LER_SD 20 0.883518 2229.250000 2098.040000 1922.480000 1863.350000 2462.700000 2319.320000 2191.960000 1947.240000 2010.590000 1815.170000 2311.890000 2219.690000 14.032982 111.832502
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LER_SD 16 0.906703 228.330000 199.444000 169.400000 199.653000 301.470000 210.156000 213.805000 210.311000 170.754000 193.600000 287.785000 208.600000 11.973222 18.627365
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LER_SD 1 0.788870 451.973000 396.549000 456.218000 353.194000 395.746000 412.499000 438.810000 424.589000 479.780000 335.977000 422.887000 390.799000 20.708019 14.987611
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LER_SD 21 0.898775 274.545000 181.051000 92.908500 176.744000 227.892000 233.702000 286.302000 180.781000 96.482100 162.140000 205.874000 234.609000 15.131100 37.104006
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LER_SD 19 0.977881 1274.240000 1073.410000 646.399000 1257.940000 1359.010000 1287.710000 1286.890000 1109.120000 709.034000 1163.180000 1341.540000 1285.100000 13.203143 131.721953
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LER_SD 12 0.838412 3.891170 3.665380 4.762590 4.722110 4.213890 3.337520 4.178980 3.331550 4.350090 4.477430 4.384830 3.134700 4.968776 0.281057
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LER_SD 5 0.876889 3.182290 4.174940 3.591210 3.552320 3.252140 3.172190 3.190530 3.948960 3.296640 3.498940 3.332200 3.053880 0.477463 0.160117
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LER_SD 17 0.951646 6.532210 5.650970 5.261620 7.545700 11.884300 10.501400 6.540460 6.019770 5.494980 8.182420 12.228800 10.385000 11.264413 1.659686
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LER_SD 18 0.776674 3.070640 3.459560 3.416090 3.023700 3.903520 4.101170 3.152540 3.785180 3.641710 3.017790 3.752690 4.032630 13.450053 0.115578
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LER_SD 5 0.711437 3.775240 3.377810 3.861240 3.862810 3.350070 3.536540 3.944860 3.544500 4.112070 3.755590 3.195820 3.737060 0.245353 0.077823
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LER_SD 6 0.911951 3.420470 3.610480 3.960220 3.320940 2.912540 3.243220 3.709310 3.651680 3.590790 3.288440 2.999290 3.504750 13.537589 0.168907
TAIR:ATMG00150 - - - - TAIR9 244949_at LER_SD 22 0.505697 3.947090 3.355390 3.508090 3.559760 3.350970 3.969200 3.572040 3.662820 3.721650 3.868530 3.502970 3.629480 16.241611 0.033248
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LER_SD 20 0.849913 9.624400 10.721900 6.759950 11.486500 12.297300 9.794300 10.486900 11.564100 6.704620 10.800300 13.135600 9.963410 0.280940 0.683123
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LER_SD 16 0.810875 9.161170 12.376400 10.418500 17.281900 13.430300 16.295600 9.511520 12.857100 10.638100 16.981900 12.218200 16.233700 9.043677 1.199644
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LER_SD 2 0.657472 3.327310 4.650300 4.232460 3.415060 3.543130 4.875610 3.524540 4.208470 4.349640 3.518190 3.296050 4.732100 20.056625 0.139892
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LER_SD 14 0.902133 4.511950 4.407190 3.855240 5.592420 5.762250 4.467670 4.708110 3.999870 3.574800 5.360830 5.634400 4.349450 9.748717 0.379966
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LER_SD 15 0.766427 3.753940 4.110910 4.074980 4.840400 4.215020 4.703470 3.405770 4.038330 3.988210 5.289490 4.249240 4.528660 4.212766 0.237457
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LER_SD 11 0.927008 3.356370 2.826850 3.475740 4.559110 3.228240 3.056140 3.619960 2.735940 3.777300 4.821260 3.001690 2.932300 5.418065 0.284117
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LER_SD 14 0.917946 3.577150 3.667960 3.888060 4.167370 4.295350 3.979080 3.430460 3.836430 4.219060 4.170540 3.921320 3.754740 5.406175 0.157996
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LER_SD 0 0.782125 5.272570 4.515590 5.253250 4.771660 4.620510 4.702390 5.696780 4.592960 4.971220 4.775510 4.704620 4.423990 20.996413 0.090053
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LER_SD 16 0.762453 3.687940 3.111040 3.576740 3.630660 3.608320 3.572540 3.741240 3.297320 3.467260 3.514300 3.341930 3.429680 11.932848 0.036098
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LER_SD 13 0.785282 8.949920 9.980710 6.373000 11.958600 10.935800 8.502710 9.443590 9.901960 6.429940 12.704600 10.242400 8.518690 8.986859 0.564715
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LER_SD 8 0.730342 2655.490000 2529.990000 2750.440000 2211.460000 2396.790000 2363.830000 2538.330000 2286.740000 2762.910000 2309.960000 2503.030000 2394.650000 13.569181 52.881417
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LER_SD 17 0.825128 577.028000 734.822000 554.305000 600.907000 871.721000 715.367000 566.470000 710.322000 559.060000 645.237000 808.771000 736.727000 11.609871 41.647476
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LER_SD 19 0.910704 3433.600000 3089.480000 2697.710000 3414.790000 3653.600000 3773.190000 3200.710000 3039.250000 2457.260000 3501.730000 3711.700000 3704.540000 23.677487 257.790876
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LER_SD 19 0.819326 4301.460000 4052.580000 3495.540000 4051.380000 4298.770000 4394.850000 4710.220000 3716.120000 3382.640000 4285.740000 3869.810000 4059.080000 14.428224 177.193183
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LER_SD 18 0.619492 2301.290000 2134.200000 1903.400000 2404.630000 2024.460000 2416.400000 2445.370000 1964.260000 1964.080000 2610.510000 1884.490000 2361.210000 13.617758 57.046648
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LER_SD 22 0.956701 930.910000 865.364000 708.172000 668.239000 918.227000 939.000000 938.819000 889.603000 720.439000 641.084000 980.586000 886.411000 15.714649 69.273604
TAIR:ATCG00600 - - - - TAIR9 244966_at LER_SD 15 0.953431 153.426000 134.383000 120.874000 159.189000 233.566000 145.618000 155.903000 123.028000 128.622000 168.318000 246.989000 149.919000 10.360022 21.365960
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LER_SD 17 0.768469 4657.930000 5637.270000 4763.080000 4365.470000 6027.850000 5428.710000 4908.720000 5720.000000 4955.570000 4444.880000 6462.830000 5162.570000 13.320876 153.882861
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LER_SD 15 0.804592 2616.000000 2293.940000 2825.020000 2611.680000 3073.370000 2833.410000 2625.050000 2242.520000 3087.450000 2614.380000 3030.150000 2648.140000 8.999857 115.961158
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LER_SD 0 0.924734 1500.780000 1431.720000 1621.180000 1074.410000 1677.560000 1516.390000 1493.470000 1498.970000 1524.920000 1015.340000 1666.350000 1452.410000 19.235948 53.548852
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LER_SD 21 0.902861 361.029000 167.837000 144.685000 157.509000 254.123000 249.447000 332.595000 183.439000 148.166000 172.331000 250.401000 252.911000 15.418973 41.857030
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LER_SD 19 0.938709 2977.990000 2791.370000 2388.000000 2869.320000 3094.430000 3153.870000 2911.360000 2525.200000 2604.540000 2753.000000 2983.010000 3342.960000 13.202376 171.921355
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LER_SD 3 0.724098 597.628000 782.996000 390.976000 637.763000 569.828000 375.647000 624.508000 802.903000 368.719000 693.374000 589.005000 389.713000 22.907094 31.700775
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LER_SD 20 0.846027 215.824000 262.635000 100.424000 229.488000 248.208000 174.494000 215.193000 285.904000 100.083000 226.757000 253.227000 180.577000 14.606065 9.992013
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LER_SD 12 0.709673 21.946700 35.608000 23.157700 39.169200 27.492200 22.715900 22.721100 38.441400 21.901700 41.672800 26.490200 22.263400 8.245405 2.621838
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LER_SD 8 0.762316 1698.760000 2177.230000 1762.770000 2143.390000 1793.570000 1625.170000 1832.610000 2094.450000 1889.480000 2058.450000 1829.750000 1610.800000 2.067985 89.655451
TAIR:ATCG00720 - - - - PPDB 244976_at LER_SD 9 0.854440 5736.250000 5718.820000 6247.540000 5984.560000 5591.210000 5203.570000 5559.650000 6201.010000 5767.660000 6186.410000 5955.900000 4937.650000 2.658663 211.289792
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LER_SD 22 0.844720 6.297880 5.708600 4.325720 4.511400 6.664430 5.802280 6.036450 5.955980 4.478820 4.806840 7.228280 5.269340 21.470297 0.411382
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LER_SD 23 0.878992 1555.340000 1524.580000 1204.600000 1314.770000 1471.160000 1596.370000 1489.480000 1589.560000 1094.460000 1284.800000 1361.400000 1722.590000 15.982706 105.739177
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LER_SD 0 0.952791 2375.990000 1765.350000 1702.130000 1553.010000 1857.820000 1728.880000 2499.830000 1651.710000 1776.550000 1697.310000 1735.200000 1862.060000 17.406557 134.423237
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LER_SD 1 0.860401 863.108000 784.335000 771.856000 516.680000 653.371000 664.353000 914.302000 741.289000 718.020000 466.998000 673.538000 628.117000 19.557120 72.107838
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LER_SD 20 0.856447 347.503000 256.473000 307.664000 267.201000 422.298000 328.443000 351.030000 259.504000 283.004000 241.885000 426.422000 354.207000 12.708978 31.187568
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LER_SD 0 0.750881 367.001000 332.814000 343.434000 248.483000 391.852000 302.790000 346.975000 300.021000 348.563000 271.429000 364.465000 308.997000 19.474357 8.295124
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LER_SD 17 0.833963 639.181000 665.042000 475.888000 512.065000 797.451000 666.083000 594.785000 651.866000 511.916000 475.846000 855.146000 624.872000 13.503662 49.922789
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LER_SD 4 0.728201 1982.840000 2048.550000 2438.930000 1418.010000 2136.690000 1646.060000 2084.700000 2206.750000 2332.170000 1443.670000 2013.180000 1545.390000 22.812828 127.729844
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LER_SD 0 0.694273 990.396000 1076.510000 1446.690000 638.392000 1360.100000 944.569000 984.388000 986.152000 1307.500000 683.803000 1335.040000 870.037000 1.776299 24.796721
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LER_SD 0 0.769274 2097.970000 2116.600000 2105.650000 1886.440000 2242.010000 2237.330000 2140.860000 2025.580000 2179.180000 1814.930000 2236.640000 2449.460000 21.218562 71.399351
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LER_SD 20 0.880357 5822.460000 4781.820000 4796.450000 4947.160000 5870.320000 5519.730000 6304.270000 4657.620000 4476.500000 5320.500000 6071.410000 5498.050000 13.461562 330.403033
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LER_SD 18 0.910029 4023.140000 3492.460000 3363.820000 3637.210000 4345.470000 4254.750000 3934.190000 3497.370000 3265.390000 3861.140000 4762.940000 3834.580000 12.159819 258.496659
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LER_SD 0 0.686052 6.040250 6.109080 6.017940 5.037330 6.297540 5.807010 5.450740 6.573100 6.452130 5.494810 5.966900 5.727100 21.944538 0.113774
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LER_SD 0 0.847049 55.428700 23.915700 12.495700 16.496500 36.877200 26.980800 51.285900 23.290100 13.040200 17.716700 33.384700 24.814700 19.997106 7.127463
* Row count is limited to 100.