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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_COL_SD
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:COL_SD_0_hours label:COL_SD_4_hours label:COL_SD_8_hours label:COL_SD_12_hours label:COL_SD_16_hours label:COL_SD_20_hours label:COL_SD_24_hours label:COL_SD_28_hours label:COL_SD_32_hours label:COL_SD_36_hours label:COL_SD_40_hours label:COL_SD_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at COL_SD 8 0.863079 5.947370 5.515920 6.424040 5.470900 5.546140 4.686650 6.256620 5.658380 5.894940 5.670270 5.784670 4.323310 11.080851 0.234263
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at COL_SD 17 0.907450 6.248860 4.848860 5.715350 6.204680 6.584160 6.688330 6.819130 5.311860 5.844760 6.788800 6.350020 6.162350 11.284667 0.298516
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at COL_SD 17 0.863026 6.039820 5.443750 4.508610 6.075120 9.004400 6.496530 6.418400 5.304210 4.332930 6.572210 8.418550 6.167270 11.328238 0.769442
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at COL_SD 0 0.712254 8.973560 6.170930 9.050780 5.678170 8.239300 8.529600 8.611000 5.901000 8.689960 5.236150 8.551050 8.606880 20.775303 0.446950
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at COL_SD 20 0.753841 3.770810 4.353540 3.650580 3.462500 3.698390 4.901690 3.665050 4.533890 3.678170 3.529020 3.950610 4.657000 16.565864 0.195137
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at COL_SD 12 0.929285 5.686820 6.460360 7.511400 9.336850 6.839800 6.213580 5.407730 5.923370 7.597570 8.559840 6.747200 6.673730 5.605756 0.713347
TAIR:ATMG00710 - - - - TAIR9 244907_at COL_SD 8 0.920727 3.437060 3.843560 5.440950 3.861200 3.827880 4.502510 3.583230 4.048060 5.612280 3.641470 3.747600 4.090540 2.192154 0.238588
TAIR:ATMG00720 - - - - TAIR9 244908_at COL_SD 0 0.497181 3.582650 3.081960 3.625740 3.560880 3.598870 3.242040 3.732380 3.381810 3.294570 3.617760 3.266460 3.177230 4.979971 0.027207
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at COL_SD 21 0.580087 3.783260 3.096610 2.907550 3.090730 3.622340 2.867130 3.678370 3.273070 2.743240 3.278900 3.824200 2.993840 21.961316 0.107890
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at COL_SD 11 0.941743 4.327950 4.023190 4.465340 5.176670 4.042200 3.825130 4.357770 3.996480 4.755700 5.525890 4.112260 4.023690 4.590144 0.247533
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at COL_SD 18 0.869898 19.812300 23.542200 10.441300 20.077100 35.678000 33.774900 19.386300 23.621300 10.514300 21.148600 32.930100 32.663500 12.652081 4.901316
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at COL_SD 8 0.689320 3.608940 3.759880 3.056110 3.283700 3.653130 2.824710 3.807030 3.987060 2.905180 3.489340 3.670230 2.698830 14.696318 0.081680
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at COL_SD 3 0.891220 4.692870 4.859930 4.663220 4.445620 3.530130 4.439950 4.699750 5.057540 4.350970 4.417670 3.851700 4.832640 21.044870 0.229737
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at COL_SD 13 0.746383 4.457060 3.694450 4.725740 5.023150 4.702760 4.243120 4.776310 4.060630 4.389820 5.426870 4.742810 4.544450 7.861891 0.209942
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at COL_SD 2 0.921897 3.751310 4.019520 4.045800 2.437920 2.746360 3.321610 3.967970 4.032950 3.864800 2.402970 2.972160 3.631800 20.575227 0.380474
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at COL_SD 7 0.944933 3.388460 3.842480 4.474580 3.035970 3.535490 3.240270 3.167680 3.904410 4.667090 3.071020 3.444430 3.504310 0.507071 0.230373
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at COL_SD 4 0.780669 4.444890 4.526490 4.288700 4.077740 4.074630 4.108640 4.042670 4.768780 4.179120 4.422210 4.206070 4.114710 22.742051 0.096024
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at COL_SD 21 0.816613 39.936700 36.604700 38.619100 31.975300 40.380700 43.351000 42.385700 33.461600 35.436100 31.389400 36.899600 47.536400 15.251664 2.633288
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at COL_SD 20 0.829018 17.973300 20.725600 10.697000 19.205500 17.906600 14.710200 19.638300 22.004100 11.288900 18.125700 17.659300 15.937800 17.400061 0.691288
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at COL_SD 19 0.792570 4.956300 4.911800 4.220300 5.688100 5.792510 4.896020 5.256860 5.205610 4.588880 5.734670 5.477270 5.333620 1.717834 0.206179
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at COL_SD 6 0.871002 9.305000 10.477300 10.313400 8.613760 9.444910 7.774930 8.411030 10.734100 10.825800 8.297850 9.525970 8.445350 0.328642 0.518606
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at COL_SD 20 0.733503 3.275340 3.606850 3.851410 3.021930 3.518870 4.381060 3.017470 3.774360 4.054810 3.227650 3.183210 4.344130 17.420617 0.066790
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at COL_SD 2 0.905376 26.440300 22.122600 25.266600 18.036800 18.220200 27.339900 26.206100 22.851500 27.193900 19.571700 18.328600 26.161000 19.195036 1.731620
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at COL_SD 22 0.839444 4.251970 3.524150 3.989330 3.747420 3.666430 4.282750 4.489730 3.389880 4.013450 3.729650 4.002150 4.693300 21.162715 0.169289
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at COL_SD 3 0.849558 5.242800 5.638660 4.128010 3.818650 4.887410 4.010310 4.761900 5.670670 3.757840 4.191860 4.679730 4.323240 16.670262 0.273855
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at COL_SD 16 0.729307 4.986310 4.009790 4.869600 4.945280 5.045910 5.505740 5.312730 4.338130 5.260890 4.535970 4.655710 5.650560 13.173581 0.180163
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at COL_SD 16 0.775751 287.355000 185.781000 266.364000 245.445000 232.498000 267.752000 288.645000 185.215000 240.591000 238.770000 214.499000 265.259000 14.472460 9.232955
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at COL_SD 7 0.848332 2.911970 3.186910 3.546860 2.831200 2.690380 3.092480 2.876020 3.294610 3.662560 3.073290 2.773650 3.283530 0.058283 0.133593
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at COL_SD 0 0.895482 5.669090 4.306350 3.885550 3.594970 3.481910 4.972510 6.005280 4.571600 4.257900 3.783490 3.247340 4.563700 18.410605 0.508488
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at COL_SD 19 0.890687 819.106000 807.129000 636.133000 932.351000 812.129000 831.774000 870.104000 794.955000 633.757000 967.779000 830.215000 884.078000 0.073187 35.096492
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at COL_SD 20 0.980788 520.094000 414.061000 356.219000 429.282000 504.539000 543.327000 526.597000 415.139000 336.252000 437.357000 523.948000 576.416000 13.896889 51.430529
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at COL_SD 22 0.880757 75.791400 48.624200 40.514600 57.962800 54.352800 79.673800 74.924300 53.210200 37.429300 61.984500 55.616300 78.414700 14.742266 8.458890
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at COL_SD 19 0.854867 5899.910000 5261.130000 5022.590000 6142.540000 6535.290000 6279.830000 5669.760000 5723.730000 4773.600000 5861.430000 6298.960000 5754.790000 11.741679 295.688917
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at COL_SD 20 0.872351 2418.560000 2246.240000 1723.470000 2550.170000 2591.180000 2402.760000 2292.370000 2441.430000 1692.500000 2514.420000 2780.240000 2186.240000 0.258573 134.309172
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at COL_SD 20 0.872361 139.889000 151.305000 58.893100 158.967000 210.888000 147.879000 152.090000 147.917000 57.044700 160.510000 202.461000 140.767000 23.972436 20.701086
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at COL_SD 22 0.954997 401.291000 364.570000 264.914000 242.847000 342.715000 388.116000 371.486000 332.457000 259.928000 243.800000 325.723000 368.509000 16.472458 37.664903
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at COL_SD 22 0.896139 74.190900 42.526100 26.291000 42.998800 49.073600 66.160500 80.898600 45.187200 25.423700 41.743500 52.335000 59.671600 15.526753 10.506369
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at COL_SD 20 0.895865 620.355000 388.144000 306.153000 493.658000 497.812000 587.026000 606.874000 360.630000 313.406000 478.658000 512.847000 622.881000 13.972827 70.730706
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at COL_SD 17 0.826434 3.071320 3.831540 3.532240 3.204700 4.211310 3.605200 3.308940 3.585170 3.653910 3.114700 4.376310 3.892320 10.931087 0.111304
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at COL_SD 20 0.817314 3.590120 3.652040 3.026420 3.505690 3.694430 4.056100 3.398280 3.646730 3.183320 3.624000 3.489220 3.953240 13.948208 0.139296
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at COL_SD 19 0.913374 6.846610 4.494440 4.633020 6.405470 6.618380 10.245900 7.308550 4.498350 4.772700 5.966370 7.163520 10.161400 13.311636 1.210249
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at COL_SD 5 0.953828 3.969270 5.322440 4.090420 3.773050 3.935390 3.993260 3.776410 5.130790 4.453430 4.138200 4.131150 3.761480 23.135631 0.235190
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at COL_SD 3 0.673112 3.687830 3.825260 3.581760 3.284940 3.674910 3.108210 3.480820 4.001140 3.295100 3.084480 3.788780 3.048810 21.766279 0.093696
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at COL_SD 16 0.637324 3.514310 3.205200 3.399090 3.766560 3.283780 3.822200 3.326710 3.352540 3.145410 4.106190 3.322780 4.037360 10.756784 0.103883
TAIR:ATMG00150 - - - - TAIR9 244949_at COL_SD 2 0.942118 4.815640 4.615790 4.126970 2.998980 3.348610 4.595690 5.088800 4.516310 4.520770 2.951100 3.421540 4.628370 19.060963 0.469971
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at COL_SD 12 0.841460 4.943010 7.552300 6.367820 7.674100 8.227050 8.374870 4.987330 8.259660 6.367410 8.263770 7.863440 8.171300 8.657500 0.460462
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at COL_SD 12 0.858198 8.660330 15.717500 14.764900 16.157100 14.254700 19.105700 8.922080 15.090100 15.318200 15.262400 15.587900 19.981600 8.545582 0.938520
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at COL_SD 0 0.734367 4.665640 4.008150 3.473470 4.206800 3.465980 4.378530 4.317600 4.147220 3.718090 3.977870 3.687240 4.135880 17.462610 0.165053
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at COL_SD 0 0.912899 4.764450 5.503900 3.259090 3.499250 3.776470 5.960300 4.524410 5.185630 3.442650 3.183080 3.799040 5.768630 17.070946 0.573302
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at COL_SD 23 0.900740 5.883200 5.173210 4.513380 4.706540 4.560520 5.230030 6.334710 4.944710 4.383200 4.386080 4.214740 5.374730 17.740412 0.388456
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at COL_SD 4 0.832174 4.203620 3.731720 3.617820 3.726610 3.142070 3.724540 4.049250 4.103640 3.548400 3.949240 2.988400 3.767450 15.541868 0.165874
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at COL_SD 16 0.792938 4.034690 4.519600 3.394480 3.437630 5.299740 3.800720 3.790260 4.615100 3.515380 3.695070 5.016840 3.527990 12.842273 0.118389
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at COL_SD 1 0.786489 4.324220 4.996930 4.499420 3.534170 4.111820 5.241310 3.989690 4.578450 4.478330 3.489870 4.479350 5.009910 18.394204 0.202637
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at COL_SD 7 0.834139 4.093650 4.132780 4.485930 3.422940 3.726160 3.667820 3.708300 4.175850 4.422460 3.597910 4.002920 3.806940 12.765295 0.148254
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at COL_SD 20 0.673043 8.111620 9.852450 7.613360 10.169000 8.608120 8.460040 7.814550 9.454590 6.882060 10.179000 9.460270 8.747400 4.163706 0.229937
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at COL_SD 1 0.638296 3829.080000 3203.370000 2798.670000 3825.160000 2879.110000 3146.930000 3971.590000 3445.170000 3016.970000 3768.430000 2652.310000 2885.640000 20.781919 97.603794
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at COL_SD 15 0.925604 3491.400000 3254.080000 3284.000000 3620.860000 3961.540000 3496.620000 3475.910000 3542.730000 3399.450000 3719.050000 4295.620000 3352.220000 9.605052 144.885877
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at COL_SD 14 0.852481 3500.540000 3385.570000 3119.800000 3819.790000 4343.680000 3612.090000 3267.180000 3440.650000 3128.050000 4147.720000 3972.400000 3686.060000 9.811043 218.175652
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at COL_SD 20 0.657859 4882.530000 4877.580000 4795.900000 5660.650000 4989.010000 5418.400000 5065.860000 5285.090000 4985.500000 5173.810000 4781.170000 5841.850000 23.798810 78.510159
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at COL_SD 19 0.797385 3206.850000 3119.710000 2815.090000 3340.270000 3620.420000 3227.150000 3191.400000 2841.150000 2549.450000 3240.890000 3595.460000 3041.160000 0.723737 158.636290
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at COL_SD 20 0.891848 871.117000 603.653000 701.626000 717.743000 870.645000 835.153000 875.303000 580.797000 708.315000 717.873000 848.623000 793.626000 12.878491 55.861320
TAIR:ATCG00600 - - - - TAIR9 244966_at COL_SD 12 0.818085 236.607000 196.157000 281.243000 246.790000 315.398000 252.117000 231.556000 199.124000 305.927000 270.449000 311.915000 230.257000 7.791246 20.317557
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at COL_SD 14 0.846734 5417.250000 4967.660000 5206.500000 6279.660000 6694.610000 5730.230000 5853.540000 5145.650000 4713.130000 6861.700000 6166.270000 5644.890000 9.689374 368.768699
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at COL_SD 17 0.818157 4145.640000 3341.170000 3589.770000 3954.250000 3812.860000 3683.030000 3803.140000 3411.070000 3908.990000 3797.430000 3840.160000 3948.420000 11.213467 76.193905
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at COL_SD 0 0.740180 2620.020000 2208.210000 2043.130000 2227.470000 2114.290000 2107.480000 2460.410000 1992.170000 1861.730000 2377.120000 2317.310000 2028.680000 20.672516 51.834763
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at COL_SD 0 0.889143 237.053000 143.897000 138.386000 164.198000 186.221000 164.495000 226.061000 143.820000 137.751000 168.056000 171.872000 153.571000 20.654901 12.655528
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at COL_SD 16 0.853177 2222.210000 2204.400000 2031.640000 2528.510000 2444.240000 2597.440000 2079.640000 2231.240000 1880.190000 2659.330000 2370.900000 2371.170000 10.416562 113.246511
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at COL_SD 15 0.857574 469.535000 555.485000 437.867000 608.442000 647.078000 436.250000 509.647000 541.814000 418.536000 584.870000 706.858000 470.361000 8.662792 34.492644
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at COL_SD 13 0.948899 181.728000 177.079000 150.193000 255.281000 203.157000 171.633000 193.769000 183.055000 164.177000 265.904000 199.077000 164.128000 7.294065 13.787220
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at COL_SD 3 0.792472 38.958900 45.848600 25.683800 41.208400 28.892900 32.706500 38.667300 46.744000 27.576400 37.405000 30.016800 34.227900 20.491122 2.379248
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at COL_SD 8 0.809013 1853.210000 2045.000000 1928.270000 2163.970000 1756.430000 1755.120000 1952.460000 2203.450000 2008.150000 2287.890000 1827.870000 1618.300000 1.951232 101.522441
TAIR:ATCG00720 - - - - PPDB 244976_at COL_SD 16 0.843928 5592.190000 6311.050000 6193.850000 6303.520000 7377.930000 5679.660000 6060.720000 6462.690000 5986.550000 5896.480000 6911.760000 6003.740000 4.026873 148.890772
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at COL_SD 0 0.603890 3.882670 4.539030 4.494210 3.707750 4.708500 4.023380 3.639370 4.840250 4.053540 3.446200 4.497300 4.078860 22.439396 0.048678
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at COL_SD 23 0.770410 2162.560000 1496.600000 1659.650000 2000.840000 1670.570000 1821.250000 2272.200000 1420.350000 1542.600000 1961.540000 1730.230000 1861.150000 22.039594 79.859707
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at COL_SD 19 0.925422 3465.780000 2887.580000 2200.100000 3014.600000 3524.700000 3253.250000 3591.640000 2853.470000 2367.000000 3128.630000 3336.450000 3422.060000 13.782294 260.869846
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at COL_SD 19 0.866792 1682.000000 1274.230000 983.873000 1415.690000 1355.110000 1461.390000 1610.760000 1236.680000 912.555000 1318.320000 1357.310000 1333.480000 14.906835 109.622511
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at COL_SD 19 0.810004 817.085000 661.841000 556.602000 697.896000 679.079000 664.605000 797.828000 625.753000 514.251000 721.573000 643.169000 708.407000 15.230470 36.652704
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at COL_SD 23 0.864721 698.299000 539.002000 366.875000 513.975000 471.920000 566.948000 668.952000 556.970000 354.382000 471.319000 427.340000 610.014000 16.828376 61.903061
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at COL_SD 19 0.890820 643.274000 433.638000 319.372000 530.769000 592.425000 546.738000 623.816000 471.345000 334.359000 513.858000 630.174000 493.942000 13.523388 55.178024
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at COL_SD 16 0.643759 2999.050000 2705.060000 2828.150000 2852.120000 2939.130000 2748.830000 2946.130000 2756.820000 2628.760000 2579.390000 3174.770000 2677.960000 13.184612 47.130173
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at COL_SD 21 0.905905 2227.370000 1939.080000 1427.020000 1894.100000 2435.090000 2129.750000 2297.900000 2091.030000 1527.510000 1997.530000 2391.150000 2226.040000 13.746368 176.734890
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at COL_SD 1 0.797431 3023.450000 2748.140000 1888.840000 2459.530000 2591.190000 2519.980000 3317.330000 2798.300000 1982.090000 2433.710000 2350.420000 2678.370000 18.968988 207.788972
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at COL_SD 18 0.852456 6285.320000 5330.270000 5313.670000 6330.210000 5889.580000 6436.830000 5883.270000 4983.870000 5076.620000 6082.790000 5535.320000 6554.730000 12.590358 271.124469
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at COL_SD 19 0.842695 4063.390000 3702.490000 3585.110000 4286.430000 4656.360000 4211.810000 4397.880000 4051.380000 3529.280000 4548.360000 4687.070000 4280.200000 0.704645 217.833852
TAIR:ATCG01280 - - - - TAIR9 244989_s_at COL_SD 8 0.660539 6.223110 4.884800 6.271510 4.829580 4.793490 5.353900 5.740250 4.728460 6.342190 4.995870 5.169700 5.820210 15.519861 0.130063
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at COL_SD 9 0.835326 10.342100 6.008580 13.987600 10.629400 10.445000 9.081290 9.512020 6.308530 15.088700 10.287000 10.276200 8.722840 5.144229 0.931652
* Row count is limited to 100.