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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_COL_LDHH
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:COL_LDHH_0_hours label:COL_LDHH_4_hours label:COL_LDHH_8_hours label:COL_LDHH_12_hours label:COL_LDHH_16_hours label:COL_LDHH_20_hours label:COL_LDHH_24_hours label:COL_LDHH_28_hours label:COL_LDHH_32_hours label:COL_LDHH_36_hours label:COL_LDHH_40_hours label:COL_LDHH_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at COL_LDHH 0 0.825563 6.836380 7.585340 7.780750 5.914600 6.960090 6.522680 7.076570 6.846600 7.295280 5.468960 7.074410 6.699320 21.151384 0.221199
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at COL_LDHH 21 0.964883 6.910330 5.377100 4.890520 4.714500 6.320700 7.564980 7.058970 5.825210 5.314360 4.671090 6.939610 7.056760 15.052317 0.670078
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at COL_LDHH 18 0.965106 8.607130 6.776980 6.345140 8.041620 11.384600 11.625400 8.085890 6.360700 6.551650 7.541890 12.054400 12.039700 12.280633 1.524683
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at COL_LDHH 14 0.842288 5.080850 4.734670 5.894770 5.109940 5.843650 5.997130 4.604950 4.721810 5.378170 5.572760 5.529910 5.988840 9.662132 0.231910
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at COL_LDHH 5 0.866051 4.319160 4.906420 4.325460 4.008890 3.787900 3.602200 4.089860 4.473750 4.182770 3.721710 3.863000 3.793140 22.543822 0.220980
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at COL_LDHH 19 0.968398 8.989370 6.415540 4.776820 7.578830 9.028070 12.001300 9.394510 6.060110 4.354870 8.227740 9.178890 10.981100 13.424916 1.517586
TAIR:ATMG00710 - - - - TAIR9 244907_at COL_LDHH 7 0.961456 4.204900 6.985850 9.298530 4.907160 4.334860 4.743130 4.008150 7.590030 9.170590 4.583420 4.551630 4.491380 0.885240 1.106633
TAIR:ATMG00720 - - - - TAIR9 244908_at COL_LDHH 5 0.974305 3.916020 4.793930 4.453400 3.407010 3.135840 2.786120 4.148220 4.650040 4.464680 3.340180 2.948510 2.534260 23.250293 0.511930
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at COL_LDHH 0 0.939909 4.224970 3.361160 3.472520 3.497810 3.338180 3.534490 4.632960 3.138420 3.141700 3.298760 3.440590 3.330260 17.157893 0.174817
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at COL_LDHH 5 0.921308 4.189530 4.861110 4.617220 4.090090 3.778550 3.816970 4.144240 4.580800 4.426720 4.279910 3.734180 4.188250 23.397234 0.216885
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at COL_LDHH 13 0.877040 20.030500 24.147000 15.482600 40.152200 26.270500 27.996600 19.585300 23.735000 16.277800 43.632300 27.315400 28.895100 8.518479 3.632659
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at COL_LDHH 6 0.922728 3.132170 4.471550 4.318860 2.993900 3.419040 2.962400 3.288270 4.322240 4.282430 3.118320 3.702000 2.734640 0.295759 0.331309
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at COL_LDHH 7 0.992500 4.620100 7.902310 13.036700 5.279250 4.862560 5.200620 4.599280 8.426090 14.251900 5.157170 4.917440 5.629980 1.147418 1.738179
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at COL_LDHH 6 0.946604 4.255660 5.103420 5.334040 3.984780 3.446650 3.492070 4.197020 5.527740 5.786480 4.175470 3.771950 3.775770 23.956067 0.524358
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at COL_LDHH 5 0.870652 3.342920 5.795810 4.969420 4.287210 3.084580 4.255700 3.094330 6.035010 4.710030 4.384820 3.125940 3.927260 0.107111 0.513812
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at COL_LDHH 6 0.987298 3.158660 8.016240 7.698040 4.005050 3.866910 3.730280 3.309640 7.822990 7.804160 4.292610 4.039010 3.407670 0.549571 1.188455
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at COL_LDHH 8 0.821067 4.008830 3.633600 4.521450 3.682720 4.149960 3.127650 3.782670 3.979310 4.344770 3.815030 4.161340 2.925360 2.573324 0.195291
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at COL_LDHH 11 0.925265 36.369400 42.885600 41.429600 58.333600 36.129900 39.564600 34.036400 43.562800 42.977200 59.137400 35.478500 40.586800 4.560155 3.743931
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at COL_LDHH 12 0.797377 24.785000 28.953800 18.121300 36.029500 18.960800 14.116400 24.151300 26.540500 16.367700 36.787000 17.743100 15.160100 9.371522 2.242604
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at COL_LDHH 4 0.949721 8.350860 17.296800 9.085050 6.923800 9.141720 7.831190 7.596930 16.239100 9.672970 6.443100 9.797210 7.144920 22.223216 1.484064
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at COL_LDHH 8 0.800798 6.130790 6.070390 6.902360 5.487270 6.429510 5.428300 6.041170 5.614880 7.378060 5.338430 6.356610 5.624760 1.596375 0.167920
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at COL_LDHH 7 0.963325 4.203290 5.058740 6.600430 4.196770 3.615900 4.164640 4.463000 5.123920 6.976360 4.182560 3.403430 4.146160 0.398504 0.611660
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at COL_LDHH 7 0.964456 10.040800 13.248300 17.202400 10.701400 9.344980 9.325970 10.127900 14.369500 17.317200 11.155200 9.454690 10.063200 0.876423 1.774853
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at COL_LDHH 14 0.805618 3.939300 3.957730 4.188230 4.184930 4.041410 4.173520 3.778640 3.801020 4.234690 4.579900 4.201680 4.329000 7.423503 0.111778
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at COL_LDHH 8 0.785766 5.252240 4.587250 5.424550 4.758580 4.748190 4.081030 5.066890 5.000750 5.145400 4.284600 4.959990 3.718200 11.718455 0.191807
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at COL_LDHH 2 0.732140 5.393460 5.271420 4.471060 5.292520 4.976260 4.386500 5.330550 5.557800 4.609860 5.049800 4.871080 4.248890 22.151252 0.116382
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at COL_LDHH 13 0.719671 80.779800 99.068000 104.655000 129.156000 93.188200 119.364000 83.909700 94.789100 100.603000 127.745000 100.478000 120.070000 7.427937 6.716195
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at COL_LDHH 7 0.907584 2.908170 3.188280 3.809530 2.939940 3.058770 3.119570 2.855450 3.462140 3.487390 2.956460 3.011660 2.993720 1.058903 0.132331
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at COL_LDHH 6 0.947150 4.658420 7.534870 6.348700 4.541510 3.844370 4.500330 4.708590 6.953240 6.855550 4.874970 3.697830 4.129570 23.566821 0.836778
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at COL_LDHH 8 0.838732 766.455000 1377.710000 1075.940000 1103.780000 919.156000 644.490000 727.562000 1506.860000 1121.580000 1153.740000 971.464000 667.329000 1.569783 147.973200
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at COL_LDHH 5 0.708695 187.065000 319.702000 253.714000 211.660000 167.332000 286.203000 200.688000 325.419000 259.338000 206.997000 160.939000 301.285000 14.541437 22.238035
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at COL_LDHH 20 0.899992 9.133210 11.348000 9.674440 13.290900 11.222300 18.125400 9.071570 11.289700 9.139310 12.157300 10.973800 17.248100 23.656886 1.167936
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at COL_LDHH 18 0.848282 6893.420000 7038.110000 6353.450000 6288.820000 7398.580000 7430.850000 6413.200000 6686.130000 6060.920000 6264.170000 7225.560000 7654.500000 13.861726 291.669837
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at COL_LDHH 6 0.897236 2334.000000 3537.750000 3180.790000 2150.300000 2778.800000 2552.090000 2399.690000 3811.320000 3313.970000 2069.730000 2671.040000 2596.850000 22.952796 243.276805
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at COL_LDHH 5 0.887918 80.416800 100.914000 88.126600 73.065600 89.075000 84.422900 80.669500 109.397000 94.718500 76.934800 86.589800 80.715700 22.444550 4.114702
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at COL_LDHH 8 0.916086 235.163000 250.440000 227.388000 240.197000 285.598000 148.757000 228.649000 237.255000 241.222000 238.028000 265.721000 149.666000 3.660115 13.375273
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at COL_LDHH 12 0.872579 88.814200 55.875000 72.749000 136.295000 81.565800 94.396000 82.369200 60.967800 76.546700 129.262000 74.114300 94.959600 8.405452 9.668084
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at COL_LDHH 14 0.911865 830.334000 808.329000 1138.160000 1245.860000 1009.440000 1093.680000 755.429000 744.173000 1191.730000 1292.790000 1093.740000 1067.730000 6.943625 112.796630
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at COL_LDHH 8 0.862189 4.227690 3.872620 5.081950 3.513670 3.177060 3.099520 3.976210 3.588570 4.960040 3.454990 3.240310 3.338740 11.957566 0.335429
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at COL_LDHH 5 0.760711 3.279270 4.151680 3.712130 3.174180 3.267770 3.976790 3.148650 4.440920 3.377660 3.298190 2.990950 3.841640 15.128247 0.169624
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at COL_LDHH 21 0.859974 8.374380 5.356520 7.335870 7.383550 6.330720 9.947300 8.050010 5.356960 7.988740 6.848140 6.270090 10.047200 14.150469 0.559593
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at COL_LDHH 0 0.898587 5.896490 3.958250 3.383210 4.065290 4.352550 3.643360 5.716130 3.621760 3.611990 4.359160 4.538640 3.667280 19.842496 0.253066
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at COL_LDHH 6 0.976824 4.778820 7.426460 7.845500 4.173810 3.939100 4.414450 4.900760 7.491080 7.160010 4.394710 3.782480 4.167020 23.517791 0.990824
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at COL_LDHH 10 0.928701 4.664910 4.557000 5.574860 5.327870 4.514180 4.557650 4.499240 4.770540 6.047270 5.441240 4.214390 4.426440 2.874192 0.320011
TAIR:ATMG00150 - - - - TAIR9 244949_at COL_LDHH 0 0.678233 4.651730 4.126070 4.662760 4.089000 3.675280 3.946390 4.982610 3.955020 4.575430 4.245020 4.041250 4.282660 21.371737 0.128340
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at COL_LDHH 15 0.916929 11.897800 6.818640 13.543300 14.606800 12.178100 13.755800 11.829900 7.381750 14.546800 14.442900 11.210000 12.540800 8.042359 1.047213
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at COL_LDHH 22 0.948822 30.113500 24.192800 13.835800 17.395300 25.226900 26.275400 28.136800 26.478700 13.509100 16.219100 26.272500 24.606300 15.974515 3.476643
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at COL_LDHH 2 0.816219 4.308280 4.578530 4.801720 4.017780 3.956910 4.667710 4.196920 4.758520 4.753320 4.155750 4.024630 4.907460 21.240145 0.128474
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at COL_LDHH 0 0.760276 5.859690 4.890460 5.324530 4.635370 5.363900 4.695380 6.084210 5.085100 5.688890 4.979620 4.837100 4.683240 20.740464 0.154703
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at COL_LDHH 2 0.782610 5.097080 4.999670 4.948070 4.496200 4.353190 5.411180 4.600460 5.489800 4.935220 4.343860 4.641960 5.426820 18.843380 0.177816
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at COL_LDHH 6 0.945696 3.185170 4.539710 5.046990 3.124990 3.484970 3.673440 3.309290 4.645070 5.337580 3.165460 3.176000 3.634660 0.056953 0.404210
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at COL_LDHH 10 0.834040 3.906680 4.572140 4.380780 4.533750 5.072840 3.822420 3.534580 4.487060 4.350830 4.855780 5.346660 3.869290 6.335775 0.263381
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at COL_LDHH 6 0.977100 4.934530 17.958100 13.562100 5.095920 4.421210 5.280410 5.356690 16.661700 14.025900 4.700320 4.225900 4.962500 23.513024 3.151771
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at COL_LDHH 1 0.869654 6.043240 5.032400 4.537040 3.756890 4.321280 3.330230 6.232460 4.773880 4.929600 3.959950 3.983620 3.247630 20.968530 0.451806
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at COL_LDHH 12 0.746314 9.361490 13.863500 7.540160 15.264200 9.214600 9.503120 9.861050 13.973000 6.901440 16.735900 8.713480 9.314440 8.691436 0.616405
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at COL_LDHH 5 0.799161 2029.540000 2373.750000 2326.960000 1931.670000 1971.710000 2152.480000 1903.060000 2610.960000 2154.150000 1990.880000 2006.510000 2347.380000 14.095047 83.537527
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at COL_LDHH 13 0.833768 3891.390000 3982.310000 4005.430000 4470.950000 4268.230000 4059.230000 4213.500000 3929.310000 4177.990000 4487.850000 4258.480000 4236.450000 7.978533 106.017618
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at COL_LDHH 8 0.820826 2009.750000 2560.840000 2597.820000 2971.200000 2312.730000 2358.040000 2202.650000 2718.900000 2652.020000 2688.150000 2158.030000 2541.610000 3.366301 131.502970
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at COL_LDHH 19 0.743651 4474.300000 4133.080000 4532.880000 4183.270000 4806.700000 4896.240000 4872.270000 3883.580000 4712.990000 4312.920000 4810.050000 5384.890000 12.931645 195.990831
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at COL_LDHH 0 0.573297 2105.390000 2188.390000 2183.760000 1888.140000 2191.500000 2159.610000 2306.100000 1969.740000 2032.570000 2009.570000 2153.010000 1980.050000 18.930555 32.823825
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at COL_LDHH 12 0.890283 422.678000 765.195000 712.106000 633.976000 613.757000 611.151000 408.591000 704.271000 641.793000 687.146000 592.475000 665.310000 8.441400 41.215586
TAIR:ATCG00600 - - - - TAIR9 244966_at COL_LDHH 4 0.953504 54.376300 180.856000 84.558300 83.332100 91.943700 69.439600 57.785000 178.942000 76.940500 80.511000 98.201800 69.764100 23.497468 13.973381
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at COL_LDHH 14 0.860042 5084.870000 5130.220000 5082.960000 5701.220000 5962.610000 5333.570000 4872.560000 5452.810000 5498.700000 5831.480000 5811.140000 5480.170000 8.063467 199.645692
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at COL_LDHH 22 0.707228 2935.460000 3685.800000 2834.270000 2713.250000 3162.400000 3533.010000 2871.440000 3933.460000 2873.870000 2461.230000 3238.010000 3757.870000 17.412637 171.457704
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at COL_LDHH 23 0.879751 1806.300000 2325.330000 1712.640000 1262.080000 1892.860000 2148.460000 1880.170000 2252.790000 1716.770000 1239.610000 1829.380000 2121.020000 18.025728 169.400093
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at COL_LDHH 20 0.844241 58.984600 58.340600 29.655300 63.294600 65.786200 47.535000 54.491400 53.556000 30.782400 68.038600 71.034700 49.725300 0.836945 4.565352
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at COL_LDHH 15 0.854747 1811.870000 1981.710000 2105.240000 2668.750000 2330.670000 2439.800000 1730.110000 1893.070000 2215.510000 2677.230000 2153.880000 2389.800000 7.838811 174.354064
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at COL_LDHH 11 0.925300 149.706000 212.486000 327.312000 559.032000 266.874000 306.742000 151.455000 212.034000 317.140000 552.785000 260.607000 307.684000 6.274584 73.285064
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at COL_LDHH 8 0.912315 40.335700 235.545000 292.677000 193.136000 106.154000 118.921000 41.056500 251.134000 266.732000 205.562000 107.649000 117.189000 2.237364 51.632151
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at COL_LDHH 12 0.807136 17.914200 43.393900 38.394000 27.332900 38.489400 33.373200 18.446800 45.109300 39.310000 28.131600 37.641200 35.219400 9.119892 2.126999
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at COL_LDHH 6 0.876220 1603.820000 2679.600000 2654.310000 2115.690000 2098.440000 1969.280000 1526.510000 2547.150000 2713.650000 1963.340000 2082.340000 2123.080000 1.858500 189.541288
TAIR:ATCG00720 - - - - PPDB 244976_at COL_LDHH 13 0.862671 6187.980000 6255.490000 6170.110000 6909.410000 6559.490000 6420.860000 6088.060000 6164.980000 6681.570000 7373.600000 6777.080000 6408.250000 7.156899 216.199550
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at COL_LDHH 17 0.819629 4.729280 4.506380 4.759430 4.849920 4.779050 4.985580 4.561940 4.195450 4.444760 4.549500 4.968380 5.129920 11.606195 0.141982
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at COL_LDHH 5 0.821089 1488.060000 2748.910000 1950.180000 1318.510000 1374.280000 2066.050000 1625.060000 2610.030000 2019.860000 1201.610000 1456.060000 2218.480000 15.094278 231.767123
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at COL_LDHH 21 0.866362 1190.500000 1221.700000 837.490000 787.316000 1285.780000 1662.960000 1101.610000 1267.160000 805.025000 769.492000 1352.220000 1763.790000 14.856258 190.299394
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at COL_LDHH 22 0.915408 627.709000 748.520000 373.046000 458.579000 602.355000 754.995000 645.120000 728.221000 351.510000 456.529000 625.893000 745.356000 16.153445 81.870522
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at COL_LDHH 5 0.638189 164.525000 272.529000 200.470000 140.236000 181.598000 250.336000 169.061000 246.342000 181.399000 151.315000 188.750000 252.079000 17.479113 14.852007
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at COL_LDHH 4 0.819680 136.908000 211.715000 120.354000 152.703000 166.702000 168.488000 147.155000 228.898000 123.709000 149.952000 173.912000 177.560000 18.079717 6.868162
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at COL_LDHH 13 0.844723 539.646000 609.137000 464.146000 803.578000 686.585000 596.104000 591.530000 663.654000 459.266000 864.834000 736.814000 637.254000 8.738532 50.583405
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at COL_LDHH 4 0.949023 1942.280000 3928.270000 2261.260000 1956.760000 2340.940000 2493.230000 2134.160000 3791.720000 2319.700000 2062.490000 2107.190000 2654.820000 21.322681 255.414153
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at COL_LDHH 4 0.758489 1152.900000 1960.760000 1225.240000 1490.820000 1574.570000 1635.210000 1262.340000 2001.420000 1104.370000 1485.950000 1621.690000 1613.130000 19.682285 25.868122
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at COL_LDHH 4 0.826859 2627.890000 3828.560000 2902.430000 2447.530000 2810.100000 3249.330000 2390.330000 3614.530000 2733.660000 2685.650000 2795.230000 3140.810000 15.435009 125.705001
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at COL_LDHH 21 0.925538 7067.870000 5972.040000 5923.900000 5829.710000 6646.210000 7255.400000 7581.760000 6444.050000 6311.610000 5560.260000 7150.600000 7731.790000 15.185854 443.875584
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at COL_LDHH 12 0.731085 4258.210000 5325.370000 5190.820000 4582.170000 4740.370000 5360.210000 3981.110000 5160.390000 5450.490000 4596.430000 4781.130000 5655.770000 10.143120 48.125439
TAIR:ATCG01280 - - - - TAIR9 244989_s_at COL_LDHH 19 0.719004 5.628920 4.865710 4.547520 5.496220 5.855600 4.596110 5.469920 5.001230 4.101240 5.741990 5.392740 4.680240 1.101840 0.151235
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at COL_LDHH 2 0.673086 9.733660 10.506500 8.339440 6.728670 9.158010 6.471890 9.449550 9.660750 8.764900 6.219580 9.631580 6.260970 21.094659 0.572753
* Row count is limited to 100.