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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_phyB9_SD
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:phyB9_SD_0_hours label:phyB9_SD_4_hours label:phyB9_SD_8_hours label:phyB9_SD_12_hours label:phyB9_SD_16_hours label:phyB9_SD_20_hours label:phyB9_SD_24_hours label:phyB9_SD_28_hours label:phyB9_SD_32_hours label:phyB9_SD_36_hours label:phyB9_SD_40_hours label:phyB9_SD_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at phyB9_SD 18 0.851826 5.760430 6.060820 5.389140 4.413970 6.608260 6.564120 5.323490 5.612780 5.229100 4.745340 6.878720 7.090970 14.074992 0.408899
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at phyB9_SD 19 0.934394 6.041710 5.602100 5.612980 6.451400 7.087870 8.165230 6.550060 6.156440 5.510040 6.330360 6.981860 8.706090 12.823520 0.595428
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at phyB9_SD 15 0.730468 6.183500 5.396140 5.792210 6.518070 6.880450 5.886830 6.515670 5.778850 6.337900 6.291750 6.675840 5.820000 9.217326 0.189377
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at phyB9_SD 14 0.842690 6.130740 6.153970 7.114400 8.056780 7.525380 7.769200 6.078210 6.721760 7.217420 7.979000 6.828500 7.340310 4.328964 0.384278
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at phyB9_SD 5 0.888673 3.447070 4.663380 3.896500 3.281430 3.157850 3.555030 3.582090 4.255610 4.112650 3.086380 2.970700 3.417220 22.340430 0.304506
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at phyB9_SD 3 0.662246 7.366880 9.811290 8.579190 8.167210 6.957460 9.031330 7.714090 9.735390 9.085470 8.549420 7.342760 9.602270 22.555235 0.332183
TAIR:ATMG00710 - - - - TAIR9 244907_at phyB9_SD 20 0.906910 4.513100 4.475830 3.249790 4.648040 4.525080 4.978780 4.495630 4.742590 3.385920 4.334300 4.653870 5.228190 14.061111 0.297098
TAIR:ATMG00720 - - - - TAIR9 244908_at phyB9_SD 20 0.867757 4.164890 4.241250 3.090300 3.811010 3.805980 3.676150 4.171250 4.104520 2.792660 4.185790 3.771780 3.616550 16.582516 0.127711
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at phyB9_SD 0 0.702535 3.433780 2.951820 2.974680 2.769480 3.191640 2.808520 3.166490 2.885940 2.860930 2.812090 3.088990 2.617920 17.812059 0.049450
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at phyB9_SD 1 0.932636 4.505990 4.516230 3.849430 3.430610 4.047710 3.929210 4.811080 4.442700 3.748000 3.430770 3.728480 4.177830 17.332503 0.279411
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at phyB9_SD 3 0.775002 17.544800 27.986200 20.292800 18.308000 11.674100 25.532600 18.105500 25.830500 19.419700 17.290900 12.784700 24.281600 20.675484 2.156059
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at phyB9_SD 1 0.882173 3.898620 3.525480 3.096510 3.591380 3.296620 3.332570 3.887710 3.545280 3.099330 3.244630 3.311520 3.326230 17.999204 0.117759
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at phyB9_SD 12 0.724167 3.930930 4.838850 4.525890 4.548730 4.567240 4.983360 3.892920 5.313150 4.737410 4.123650 4.938360 5.209640 11.076807 0.021057
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at phyB9_SD 16 0.831052 4.077390 4.017050 4.300790 5.427880 4.508580 5.295060 4.317980 3.982940 3.871200 5.805870 4.691000 4.889200 9.255686 0.307903
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at phyB9_SD 4 0.692223 2.907800 4.427010 3.223660 3.768650 2.725050 3.362080 3.098750 4.014650 3.165800 3.962220 2.652590 3.543270 23.886424 0.183977
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at phyB9_SD 12 0.813850 3.581180 3.657800 3.406280 4.464780 3.085450 3.806430 3.231330 3.789990 3.481340 4.773780 2.804320 3.866320 7.872184 0.118490
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at phyB9_SD 8 0.604584 3.454320 3.792820 4.506280 3.173900 4.529330 3.775910 3.380690 3.729490 4.831050 3.240020 4.610300 4.062940 6.344869 0.095122
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at phyB9_SD 12 0.766166 32.685900 40.536500 37.072500 49.069800 39.061800 39.169900 35.404200 42.383400 33.882500 45.168200 36.364100 41.351900 6.387863 1.475726
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at phyB9_SD 12 0.702297 17.069600 20.689200 16.394100 21.669600 18.215500 19.103700 16.279200 19.258700 17.560100 22.298300 17.902700 20.675400 7.107444 0.503671
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at phyB9_SD 4 0.862877 4.152330 6.563670 4.837000 5.104860 3.867460 5.277590 4.224530 7.072900 4.690460 4.666160 3.758010 5.210440 22.296133 0.404025
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at phyB9_SD 9 0.816636 7.484960 9.717670 11.308300 8.236180 9.486420 7.690970 6.983730 8.903230 10.666600 8.878170 9.194740 6.945020 3.012608 0.745338
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at phyB9_SD 23 0.900204 5.182930 3.980800 3.959520 3.402400 3.416880 4.422420 5.189610 4.244770 3.993560 3.679080 3.579510 4.008000 18.595249 0.349596
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at phyB9_SD 13 0.929094 14.035000 14.477400 17.667400 25.093600 18.728900 17.877500 13.774500 14.284400 17.509600 22.721200 20.476600 18.662900 7.507723 2.215844
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at phyB9_SD 18 0.871359 3.898720 3.333710 3.334530 3.865350 3.898230 4.159130 4.223050 3.304650 3.335550 3.568840 3.897830 3.801130 13.304985 0.187497
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at phyB9_SD 20 0.732634 4.365520 5.615980 3.732750 4.554430 4.858590 4.675190 4.203040 5.092800 3.664720 4.728090 4.472420 4.549120 16.423788 0.080812
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at phyB9_SD 22 0.860026 4.722340 4.892340 4.295610 4.563570 5.211730 5.002410 4.707880 5.052850 4.385650 4.202250 4.825600 5.142290 15.004076 0.158935
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at phyB9_SD 20 0.811194 250.397000 176.277000 201.119000 166.074000 278.613000 204.595000 244.080000 176.944000 184.338000 173.511000 273.786000 202.456000 22.728574 16.858154
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at phyB9_SD 8 0.682376 3.324160 3.326770 2.830640 3.318460 3.488800 2.868390 3.415360 3.509040 3.046050 3.602100 3.212050 2.738100 2.354957 0.035838
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at phyB9_SD 12 0.911803 2.984770 4.409280 3.691350 4.134270 4.170230 4.222860 2.703440 4.578270 4.035130 4.355050 4.268600 3.952400 5.856476 0.191999
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at phyB9_SD 17 0.895162 440.595000 566.028000 648.871000 602.643000 944.865000 736.328000 483.796000 588.936000 675.992000 547.057000 899.807000 775.017000 9.856657 74.686208
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at phyB9_SD 16 0.924247 261.669000 235.752000 307.897000 313.007000 432.172000 411.154000 268.577000 243.891000 303.276000 327.388000 430.312000 396.543000 10.529477 45.114191
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at phyB9_SD 16 0.981335 27.189300 30.154600 30.278600 53.336200 47.503900 54.064200 27.791700 27.298700 29.698500 56.176700 51.957400 57.174100 9.886031 7.912234
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at phyB9_SD 15 0.808414 5113.410000 4272.910000 5108.520000 4955.330000 5883.100000 6074.670000 4936.630000 3950.600000 5595.440000 4828.830000 5410.780000 5850.700000 11.330115 314.557511
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at phyB9_SD 18 0.950296 1690.170000 1838.980000 1665.290000 1666.050000 2075.370000 2230.980000 1540.830000 1751.500000 1622.150000 1711.690000 2248.510000 2260.850000 12.201828 140.043396
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at phyB9_SD 18 0.978402 50.030800 58.989700 63.339200 64.940600 125.675000 137.662000 45.370500 59.922700 65.345400 63.232800 124.908000 144.753000 0.335145 20.676580
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at phyB9_SD 17 0.948386 289.126000 174.364000 242.528000 306.311000 313.578000 283.395000 314.407000 183.954000 238.856000 294.027000 315.222000 267.537000 10.781358 25.843700
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at phyB9_SD 19 0.860059 29.498600 26.300400 19.031000 35.501600 38.243100 28.638000 28.626100 23.672000 17.557200 36.374700 34.671600 29.917500 1.340549 3.451455
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at phyB9_SD 16 0.971246 291.191000 275.275000 281.163000 382.473000 456.938000 370.180000 283.825000 257.315000 287.689000 409.094000 469.183000 366.704000 9.726495 48.943957
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at phyB9_SD 13 0.788992 3.850310 3.687920 3.195710 4.050530 3.709440 3.583850 3.639850 3.766880 3.460970 4.343560 3.987710 3.540130 8.521986 0.083504
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at phyB9_SD 4 0.524305 3.518300 3.380200 3.278770 3.743220 3.124150 3.474720 3.738470 3.617190 3.192600 3.415960 3.302230 3.434340 17.276129 0.051076
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at phyB9_SD 15 0.963317 4.540200 5.831750 5.759630 8.567650 13.268800 7.390140 4.544560 6.174600 6.144440 8.665270 14.024700 6.996170 9.106902 1.764885
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at phyB9_SD 18 0.654794 3.557340 3.638270 3.724090 3.386460 3.940170 3.785620 3.554760 3.854690 3.654010 3.629620 3.727720 3.889690 13.401658 0.036504
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at phyB9_SD 11 0.851261 3.111590 3.682400 3.537770 4.036150 3.676290 3.341760 3.189350 3.936940 3.730690 3.882010 3.635180 3.506050 7.377028 0.149049
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at phyB9_SD 20 0.894247 3.471730 3.480640 2.902090 3.809220 3.552800 3.422740 3.363870 3.565930 2.795010 3.554330 3.515520 3.295760 0.118879 0.075319
TAIR:ATMG00150 - - - - TAIR9 244949_at phyB9_SD 14 0.783166 3.660500 3.462170 4.189840 3.756330 4.061850 4.391630 3.543100 3.638620 4.602520 3.893990 4.289400 4.018890 8.052051 0.122495
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at phyB9_SD 11 0.962066 6.514180 7.886160 8.504380 9.744140 7.828270 6.379780 6.508440 7.576480 9.224000 9.366290 7.243110 6.540580 4.100624 0.786612
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at phyB9_SD 18 0.938708 10.743100 14.571200 14.588900 12.613400 22.606000 21.071500 11.484200 15.215600 15.584500 11.371000 24.611100 22.818400 11.491259 2.267912
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at phyB9_SD 8 0.714609 4.596510 3.615510 3.641810 4.559870 3.972360 3.192430 4.838200 3.917940 3.776210 4.118040 4.050650 3.010380 11.423436 0.052972
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at phyB9_SD 22 0.952565 4.786840 4.524190 4.011060 3.622010 4.344340 4.978020 4.898530 4.469350 3.984030 3.687470 4.776470 5.039410 16.049642 0.317442
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at phyB9_SD 16 0.929391 4.848550 4.423100 4.765550 5.629930 6.079290 5.508110 4.759130 4.734990 5.221780 5.104750 6.164360 5.368460 9.808035 0.341571
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at phyB9_SD 18 0.738776 3.897830 3.380680 3.352430 3.470230 3.895540 3.526870 3.537210 3.458150 3.032390 3.750000 3.954520 3.276650 11.749113 0.103419
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at phyB9_SD 4 0.735792 3.779110 5.117690 3.318180 3.900310 3.879020 4.669260 4.016820 5.012050 3.610820 3.695790 4.137490 4.673610 18.402224 0.206425
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at phyB9_SD 4 0.848314 5.617340 5.701510 5.018100 6.283070 3.960530 5.521200 6.123220 5.251160 5.382720 6.311810 4.138620 5.582950 22.240426 0.173234
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at phyB9_SD 11 0.829586 3.681520 2.935260 3.848180 4.743950 3.565780 3.874630 3.754360 3.227320 4.202640 4.414920 3.250100 3.697720 6.252304 0.191156
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at phyB9_SD 9 0.895010 6.806330 8.549870 8.285300 9.772540 6.938450 7.163830 6.914560 8.593340 8.246970 9.890550 7.248500 6.660160 3.324268 0.634193
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at phyB9_SD 14 0.697299 2770.930000 2608.850000 2401.170000 3131.300000 2914.610000 2357.380000 2948.100000 2662.490000 2426.800000 2863.720000 2831.060000 2510.350000 8.804563 55.373518
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at phyB9_SD 12 0.855886 3050.320000 2970.020000 2893.640000 3299.720000 3032.530000 2832.560000 2960.000000 3017.040000 3176.080000 3571.440000 3048.350000 2927.760000 6.664432 89.894076
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at phyB9_SD 18 0.803300 3104.560000 3211.280000 3646.330000 3127.050000 3850.200000 3785.230000 3344.940000 3525.470000 3572.320000 3020.170000 3959.240000 3812.040000 11.864044 104.805658
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at phyB9_SD 19 0.821962 4526.160000 4267.480000 3929.020000 4531.840000 4485.000000 4481.900000 4520.330000 4379.610000 3566.490000 4980.900000 4160.010000 4875.750000 13.075324 139.739165
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at phyB9_SD 16 0.877339 2273.930000 2525.270000 2388.420000 2739.850000 2862.450000 2986.470000 2437.530000 2482.830000 2259.360000 2881.230000 2753.150000 3255.390000 11.178817 162.629148
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at phyB9_SD 16 0.934890 482.593000 419.297000 457.029000 563.912000 683.404000 554.476000 464.678000 439.087000 425.063000 607.468000 745.006000 553.511000 10.007431 66.252459
TAIR:ATCG00600 - - - - TAIR9 244966_at phyB9_SD 13 0.892022 87.967400 195.280000 190.699000 236.171000 280.836000 210.918000 80.798600 178.114000 187.062000 246.973000 277.398000 227.339000 7.962249 36.029715
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at phyB9_SD 11 0.931687 4189.600000 4772.980000 5552.160000 5300.180000 5405.280000 4515.850000 4001.360000 4991.460000 5446.610000 5690.800000 5718.890000 4523.950000 5.557473 374.122095
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at phyB9_SD 13 0.970765 2450.820000 2811.000000 3366.710000 3811.880000 3460.110000 3138.310000 2471.880000 2684.550000 3034.910000 4053.890000 3637.780000 3144.840000 7.244561 334.558423
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at phyB9_SD 13 0.880566 1647.700000 1508.140000 1728.870000 2281.530000 1877.560000 1798.680000 1517.310000 1610.730000 1560.340000 2230.350000 1705.140000 1903.810000 7.931218 130.697205
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at phyB9_SD 20 0.769787 163.312000 93.634000 131.510000 55.435300 178.620000 126.444000 175.386000 100.388000 136.073000 55.950100 185.956000 138.882000 14.935481 16.893811
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at phyB9_SD 20 0.621626 2118.690000 2014.370000 2280.210000 2350.330000 2034.330000 2431.070000 2016.780000 2049.390000 2445.560000 2143.170000 1838.630000 2500.760000 5.684431 13.345516
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at phyB9_SD 12 0.916095 80.031400 348.934000 290.320000 280.656000 409.057000 316.722000 85.829700 350.583000 308.817000 257.087000 370.641000 313.059000 6.906825 34.008085
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at phyB9_SD 21 0.898206 126.317000 132.163000 80.942900 106.113000 149.527000 121.219000 138.230000 125.865000 77.270000 96.786700 142.545000 118.040000 14.700472 10.924151
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at phyB9_SD 11 0.939183 18.536100 27.517600 26.996300 33.318700 28.786600 21.235500 16.985000 26.541700 27.747400 34.246000 26.382700 21.114300 5.057465 3.333947
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at phyB9_SD 11 0.958321 940.982000 1652.820000 1587.590000 1680.610000 1703.600000 1384.690000 1032.970000 1546.000000 1695.850000 1766.750000 1612.230000 1258.900000 5.084013 158.865886
TAIR:ATCG00720 - - - - PPDB 244976_at phyB9_SD 11 0.796789 4998.860000 6120.780000 6058.740000 5706.020000 5940.980000 5728.790000 5061.230000 6011.120000 6059.890000 5287.870000 6099.030000 5175.330000 8.474362 156.244214
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at phyB9_SD 13 0.950211 2.795630 3.765090 3.987270 4.319360 3.920830 4.080030 2.588940 3.766000 3.951380 4.161620 4.234990 3.743370 6.483594 0.291197
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at phyB9_SD 21 0.977048 1875.780000 1429.130000 1372.240000 1312.460000 1663.540000 1871.310000 1796.200000 1483.910000 1279.990000 1411.730000 1597.100000 1840.350000 15.128951 148.708486
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at phyB9_SD 19 0.969020 2843.210000 2196.930000 2323.650000 2731.330000 3121.470000 3491.130000 3055.510000 2170.900000 2182.740000 2677.730000 3408.320000 3322.860000 12.551206 325.950626
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at phyB9_SD 19 0.864671 1124.220000 1098.590000 839.945000 1074.440000 1252.530000 1359.800000 1020.530000 1150.670000 848.134000 1009.030000 1349.400000 1285.030000 13.184332 99.231047
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at phyB9_SD 18 0.962704 434.353000 384.263000 404.541000 532.463000 733.751000 767.263000 464.578000 421.991000 420.191000 516.350000 789.744000 770.189000 11.533065 103.974446
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at phyB9_SD 18 0.958612 346.107000 291.110000 289.185000 373.757000 631.639000 597.347000 370.250000 283.516000 317.484000 374.849000 581.450000 540.946000 0.322160 84.744993
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at phyB9_SD 17 0.963277 313.526000 283.358000 302.322000 378.503000 476.768000 475.569000 300.750000 274.797000 272.147000 383.942000 481.126000 522.491000 11.278831 60.493708
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at phyB9_SD 14 0.954627 2054.900000 2142.660000 2265.770000 2774.590000 2850.490000 2272.570000 1968.960000 2038.610000 2193.560000 2965.180000 2699.850000 2160.630000 7.715230 223.259416
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at phyB9_SD 15 0.979984 1182.580000 1253.410000 1431.840000 1958.140000 1887.470000 1681.930000 1249.940000 1254.240000 1375.380000 1916.450000 1867.260000 1561.350000 8.551437 196.112780
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at phyB9_SD 18 0.943064 1958.160000 1531.110000 1615.620000 2103.790000 2122.350000 2241.870000 1927.390000 1484.180000 1667.740000 1922.740000 2155.680000 2117.560000 11.560074 169.914760
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at phyB9_SD 18 0.929909 5557.690000 4575.870000 4702.400000 6049.150000 6044.030000 6010.160000 5613.100000 5031.790000 4707.400000 5502.740000 6523.540000 6050.950000 11.580846 407.405371
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at phyB9_SD 17 0.884914 2945.040000 3054.410000 2795.000000 3576.700000 3793.870000 4225.360000 2706.550000 3238.230000 2643.840000 3510.170000 3604.780000 4069.030000 11.381417 289.691403
TAIR:ATCG01280 - - - - TAIR9 244989_s_at phyB9_SD 22 0.825259 5.278810 4.540670 3.834120 4.496720 4.269730 5.648580 5.042140 4.213890 4.121360 4.932570 4.564090 5.105530 14.806123 0.279884
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at phyB9_SD 0 0.652282 10.537000 8.046320 7.501850 10.451800 6.464430 7.247320 10.357400 7.572450 7.313290 9.846250 6.689270 7.447970 21.445600 0.237764
* Row count is limited to 100.