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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_DD_DDHC
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:DD_DDHC_0_hours label:DD_DDHC_4_hours label:DD_DDHC_8_hours label:DD_DDHC_12_hours label:DD_DDHC_16_hours label:DD_DDHC_20_hours label:DD_DDHC_24_hours label:DD_DDHC_28_hours label:DD_DDHC_32_hours label:DD_DDHC_36_hours label:DD_DDHC_40_hours label:DD_DDHC_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at DD_DDHC 11 0.407179 4.452370 5.818130 6.032690 7.086500 5.937050 5.149380 8.663070 7.442490 8.406260 10.043600 8.245200 8.446960 6.053378 0.408105
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at DD_DDHC 11 0.685085 5.891920 4.552890 5.697620 5.628970 4.084780 4.906860 4.337060 4.859630 6.093940 9.265700 5.898440 5.906270 5.752425 0.454309
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at DD_DDHC 8 0.714969 6.001670 7.124920 7.328680 6.147360 7.563400 5.865000 5.994850 5.449400 11.993200 8.921610 6.219390 5.663850 3.534755 0.790001
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at DD_DDHC 7 0.405493 7.403330 5.435690 8.713280 6.662550 6.285740 6.107660 8.595730 8.304420 6.263770 7.083040 7.809030 7.124690 14.999968 0.141869
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at DD_DDHC 13 0.517240 4.567980 4.054560 4.129200 4.269520 4.743630 4.100200 4.199230 4.710160 4.281600 5.864790 4.853190 5.052590 8.932633 0.163565
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at DD_DDHC 11 0.646959 4.234800 4.329840 5.117940 6.116010 5.698610 4.351370 7.023320 5.638140 7.717770 10.617800 5.553360 6.122490 5.514116 0.613172
TAIR:ATMG00710 - - - - TAIR9 244907_at DD_DDHC 14 0.456657 4.586420 4.226380 4.748350 3.938660 4.778410 4.260610 4.523860 4.654260 5.176740 6.473490 4.777980 4.622460 6.556759 0.181993
TAIR:ATMG00720 - - - - TAIR9 244908_at DD_DDHC 4 0.577521 4.638710 4.430660 4.238520 4.167710 4.674180 4.516930 4.158510 5.666570 4.024070 4.360810 4.878090 4.252240 17.840288 0.066264
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at DD_DDHC 0 0.742004 4.245280 3.628350 2.908370 3.174260 3.324440 3.040630 4.407480 3.459740 3.191770 3.904580 3.684260 3.894310 19.190274 0.177815
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at DD_DDHC 4 0.439525 4.222770 3.948160 3.736140 3.681560 4.167790 4.157990 3.464610 5.142700 4.210030 4.647100 4.167220 3.278870 1.686933 0.100995
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at DD_DDHC 14 0.452353 11.087800 14.313700 61.191200 26.212100 20.083100 39.001200 49.569800 32.926300 54.442700 68.876500 28.712000 74.341500 6.066973 3.029978
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at DD_DDHC 10 0.727292 2.772890 3.884580 2.845820 3.613980 3.189490 2.887100 2.601440 3.516370 3.174380 4.109960 3.551350 2.826380 4.595107 0.194055
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at DD_DDHC 12 0.361737 6.261880 5.700680 5.709420 6.936230 6.934880 6.251350 5.959410 9.041660 6.671100 7.643200 6.540600 7.349690 5.862511 0.092931
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at DD_DDHC 12 0.592371 4.864920 3.572430 3.501520 4.845620 4.135260 4.257080 4.724440 4.602830 5.376000 6.245470 4.201200 4.761450 6.654766 0.127859
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at DD_DDHC 16 0.581728 2.840990 2.917390 2.817930 3.336410 3.321680 3.141540 3.227210 3.589950 3.185450 3.697310 3.587960 3.486420 2.923505 0.102768
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at DD_DDHC 21 0.758556 4.460290 4.001610 3.777660 4.028450 4.329100 4.287780 4.127790 4.359150 3.680940 4.138230 4.376790 3.886590 21.770712 0.091752
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at DD_DDHC 7 0.541587 3.345350 3.337800 3.418580 3.117110 3.393380 2.527490 2.846430 3.364820 3.223370 3.345090 3.172180 3.488130 2.528073 0.069839
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at DD_DDHC 13 0.586204 22.072800 12.516300 42.241400 29.554900 35.995800 22.200200 25.884900 37.321500 32.001600 65.052900 37.913900 45.391000 6.911552 5.318388
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at DD_DDHC 11 0.735309 11.798800 9.837620 26.796800 22.655400 14.741700 16.015400 18.655000 16.046800 18.668300 37.439200 20.902000 22.094600 6.207998 3.187891
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at DD_DDHC 6 0.706108 7.985130 6.134960 6.601570 8.453130 6.416480 5.112160 7.624120 7.711220 7.039330 8.146910 5.016500 6.832200 0.671753 0.301241
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at DD_DDHC 22 0.576665 4.911650 3.979980 4.279220 4.330070 4.130850 4.939110 5.615160 4.961800 4.705170 5.396300 4.721020 5.155450 15.850129 0.137993
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at DD_DDHC 12 0.672254 6.374950 4.493360 5.049720 5.658400 5.708950 5.509330 5.705340 6.684020 6.392920 30.444400 4.939220 5.500600 5.867327 1.999061
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at DD_DDHC 12 0.308912 13.853900 11.735100 12.811500 12.725400 11.376700 14.123800 12.975700 15.444700 12.589500 15.540900 13.636400 12.394100 12.847520 0.077667
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at DD_DDHC 12 0.650295 3.575050 3.755230 3.912750 4.697920 4.371960 3.853850 4.355620 3.746710 5.973390 3.958680 4.001670 3.791190 7.830489 0.214338
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at DD_DDHC 13 0.690595 5.229970 5.499740 6.004500 5.891340 6.637520 4.644000 4.284740 4.913900 4.310380 8.327770 4.351830 4.753230 6.207302 0.454926
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at DD_DDHC 13 0.562913 4.392260 3.210800 4.605800 4.481240 5.053280 3.912880 5.443060 5.078600 6.357960 7.452220 3.444590 4.779520 7.877035 0.315505
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at DD_DDHC 14 0.633805 69.346900 36.263700 171.542000 123.014000 140.366000 47.739100 87.263100 82.943300 128.798000 106.453000 108.650000 155.997000 5.414289 15.689377
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at DD_DDHC 13 0.467667 3.090670 3.404790 3.208770 3.504330 3.428300 3.879190 3.322660 4.240800 3.457840 4.677360 3.854600 3.615060 7.262867 0.103364
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at DD_DDHC 17 0.711092 5.770810 4.766980 4.965250 4.652160 5.242690 6.099090 5.167210 4.406130 6.064010 7.155040 5.826570 5.285220 2.671059 0.212290
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at DD_DDHC 11 0.558324 14.474700 18.115900 98.968900 139.492000 152.175000 107.672000 93.973500 111.105000 326.324000 603.164000 118.785000 375.015000 6.953584 58.168268
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at DD_DDHC 11 0.670652 13.668200 6.734480 73.522300 78.401000 69.276000 38.284600 47.292700 60.905800 89.269800 351.522000 53.358000 137.071000 6.568523 32.878273
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at DD_DDHC 11 0.593544 7.651560 5.606550 8.570850 19.449200 14.376300 7.482620 14.948600 23.277600 22.227800 35.600900 6.178400 23.510400 5.064483 2.421260
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at DD_DDHC 20 0.828236 504.259000 2329.470000 1070.160000 1910.380000 1566.460000 4751.350000 1606.550000 2970.680000 3232.580000 1278.500000 2169.010000 4762.610000 14.412211 326.050455
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at DD_DDHC 20 0.890664 25.718500 389.673000 119.999000 447.233000 169.535000 872.309000 161.648000 390.238000 428.195000 298.092000 239.625000 1029.920000 22.688512 75.360979
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at DD_DDHC 20 0.613772 4.231190 5.084140 4.961630 9.877700 4.223600 19.717300 5.298570 8.032440 9.311730 23.233700 6.665870 17.178600 2.151905 1.740958
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at DD_DDHC 11 0.669605 92.331800 39.010200 99.933700 95.173000 108.717000 98.043700 72.723300 66.118900 131.906000 352.941000 76.298100 115.335000 6.606449 28.038681
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at DD_DDHC 11 0.568054 12.306900 9.833290 55.303700 41.138200 40.523800 35.646400 32.391000 46.011400 56.784700 172.167000 52.648800 100.232000 7.119610 15.265789
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at DD_DDHC 14 0.603603 163.164000 141.313000 449.402000 538.457000 462.310000 504.364000 362.619000 531.089000 788.035000 1048.800000 458.983000 1121.640000 7.940345 94.578982
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at DD_DDHC 13 0.660759 6.709160 6.957720 5.417740 8.409020 7.322050 4.387960 6.109590 5.608420 6.431010 7.366770 5.111410 5.418110 7.714268 0.361836
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at DD_DDHC 23 0.489453 4.699110 3.740510 3.394540 3.679410 4.613620 3.505220 3.751680 4.339240 3.854370 3.428250 2.913370 3.835380 18.898877 0.142713
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at DD_DDHC 16 0.577638 4.661840 4.173650 4.891170 4.796070 5.066670 5.298810 6.098200 4.642040 5.692310 5.897770 5.248710 6.449370 11.832424 0.192471
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at DD_DDHC 13 0.664876 6.280050 4.513950 6.232060 6.581310 6.204840 5.562570 5.601260 6.232790 5.535480 6.739420 4.765520 4.750370 7.671571 0.209632
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at DD_DDHC 10 0.712088 2.637930 3.518420 4.478010 4.754720 4.081470 3.976680 3.339350 4.465990 3.924540 3.439810 3.585520 4.118910 5.084228 0.189763
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at DD_DDHC 3 0.455014 5.598940 6.473160 5.198330 5.464090 6.648190 3.752290 5.170260 5.797690 4.413250 5.268950 5.134390 5.623970 23.030060 0.053951
TAIR:ATMG00150 - - - - TAIR9 244949_at DD_DDHC 5 0.520991 4.526070 3.600350 3.898350 3.369740 2.856740 3.849650 2.648480 3.392960 3.577590 4.093810 3.625070 3.042680 1.261252 0.083546
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at DD_DDHC 8 0.710027 10.634200 6.367470 15.607900 11.673500 12.851600 8.410330 7.496460 14.082200 23.034500 19.778800 11.453500 13.857300 4.344952 2.151923
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at DD_DDHC 11 0.886334 13.166200 11.724000 12.383900 19.779800 9.544150 6.579440 7.598140 8.973080 13.034800 23.582200 9.683540 13.943400 5.148285 2.077336
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at DD_DDHC 23 0.457511 3.449610 3.626280 3.848910 3.407550 4.155210 3.920970 5.151230 4.864760 4.130930 4.607000 2.921460 4.300750 20.378300 0.145096
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at DD_DDHC 12 0.442314 4.881330 3.471880 3.567710 3.170590 4.001000 3.650760 3.433530 3.967480 3.640810 7.515230 4.116570 5.147430 9.048060 0.228606
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at DD_DDHC 1 0.753112 5.975540 6.263390 5.994210 5.301380 5.362180 5.536220 6.573850 6.236500 5.908970 6.133100 5.835790 5.589540 21.506166 0.188917
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at DD_DDHC 14 0.753651 3.522300 2.830530 3.808720 3.283770 4.354830 3.166150 3.377950 3.672330 4.218190 4.596310 3.644400 3.027950 6.419171 0.221702
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at DD_DDHC 12 0.888800 3.646220 4.072880 4.717320 5.052800 5.434300 3.834240 3.036970 4.497040 5.088560 5.704880 4.196800 4.221110 5.585538 0.459397
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at DD_DDHC 11 0.504755 5.982480 4.189540 6.268050 6.281530 5.039280 4.190000 5.054990 5.513360 5.202290 5.922660 5.841480 5.736300 5.523269 0.212290
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at DD_DDHC 14 0.531865 3.965610 3.531060 3.869200 3.855160 4.040910 4.330020 3.639090 4.549330 3.963770 4.684710 3.685500 3.389260 7.761625 0.075843
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at DD_DDHC 12 0.764653 13.031900 7.174330 50.246300 27.308100 52.196800 8.267260 15.075900 18.849500 42.397000 43.778300 14.121000 21.956200 5.234547 8.021825
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at DD_DDHC 19 0.831421 499.977000 1171.760000 1253.520000 1073.680000 1154.800000 1793.580000 753.514000 1174.990000 1166.970000 971.115000 1611.850000 2035.730000 0.707737 134.274774
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at DD_DDHC 14 0.612754 2094.340000 1917.020000 3238.050000 3560.990000 3694.920000 2564.800000 2553.900000 2554.110000 3224.440000 2497.100000 2140.440000 3630.250000 7.540745 201.657798
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at DD_DDHC 13 0.656101 216.655000 179.461000 948.508000 1028.690000 961.956000 540.591000 650.062000 869.881000 1310.160000 2412.310000 968.001000 1582.020000 6.787632 262.444635
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at DD_DDHC 20 0.743340 108.286000 741.994000 329.490000 582.115000 580.202000 1878.900000 630.319000 1010.430000 1105.890000 1422.440000 923.410000 1622.470000 0.263052 131.455125
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at DD_DDHC 20 0.780307 12.945500 181.730000 47.482500 108.303000 125.812000 487.929000 109.733000 182.031000 207.330000 343.483000 160.910000 366.417000 23.922528 37.715550
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at DD_DDHC 13 0.712622 19.968700 10.594200 48.768700 79.299800 107.746000 50.860500 14.938300 25.854300 66.958000 261.602000 45.155000 101.276000 7.395760 30.872986
TAIR:ATCG00600 - - - - TAIR9 244966_at DD_DDHC 12 0.619765 4.139060 6.331750 8.297120 8.658330 7.680140 28.653500 5.428570 7.169020 7.595150 64.768200 5.386240 10.966200 7.419037 4.630728
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at DD_DDHC 16 0.618523 316.692000 916.258000 1492.780000 1818.570000 1869.830000 2527.450000 1021.050000 1705.180000 1774.790000 4265.640000 1215.990000 2918.090000 3.968744 376.073296
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at DD_DDHC 20 0.827291 342.068000 1345.320000 699.967000 882.547000 741.050000 2097.880000 730.259000 1018.940000 831.613000 703.795000 1014.900000 1564.860000 14.198500 131.009987
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at DD_DDHC 20 0.797135 362.728000 882.505000 542.906000 656.336000 651.564000 1121.950000 273.962000 576.180000 446.283000 344.930000 455.668000 1037.030000 13.946528 67.654671
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at DD_DDHC 12 0.628088 14.953200 6.938110 15.062200 17.121800 22.938800 23.201900 14.804300 15.062000 27.870400 148.036000 16.329400 49.551900 7.168495 11.284205
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at DD_DDHC 14 0.562570 576.636000 589.618000 987.841000 1115.590000 950.365000 1006.000000 989.508000 1098.340000 1133.550000 1506.490000 900.750000 1441.680000 7.567341 88.547889
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at DD_DDHC 12 0.636218 6.365640 8.713600 8.539600 9.814130 15.974800 9.843120 13.066600 23.778400 12.214200 120.167000 7.364270 27.345300 6.246067 8.163192
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at DD_DDHC 12 0.764079 4.174820 4.004350 7.490270 14.042000 5.669440 6.903500 6.169040 7.515250 6.302820 59.846500 6.116600 11.865000 6.282859 5.113193
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at DD_DDHC 16 0.460847 4.962730 5.676320 5.192230 7.243950 9.503470 7.803680 9.757820 8.498810 9.796090 14.495700 7.519110 12.538100 9.395181 0.762348
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at DD_DDHC 20 0.841135 41.748100 317.727000 338.418000 548.591000 482.514000 1333.910000 396.492000 628.067000 671.174000 672.077000 276.519000 1070.870000 23.968807 87.213615
TAIR:ATCG00720 - - - - PPDB 244976_at DD_DDHC 19 0.693301 1097.790000 2668.760000 2245.360000 2837.820000 3325.800000 4273.090000 2341.040000 3203.820000 4011.970000 3149.310000 2881.780000 4639.970000 1.879042 244.874018
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at DD_DDHC 7 0.532081 3.088780 3.014410 3.153240 2.772980 3.041400 2.481820 2.533150 3.241380 3.441060 4.608420 2.622050 3.403650 3.880280 0.178222
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at DD_DDHC 20 0.806820 401.389000 702.501000 685.682000 792.448000 721.583000 1661.310000 532.689000 561.915000 959.353000 517.881000 547.769000 1024.440000 23.407360 76.380852
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at DD_DDHC 20 0.791274 57.295500 324.893000 61.837300 93.178000 35.438900 1440.790000 154.606000 193.294000 325.755000 128.391000 177.408000 431.169000 14.728183 112.612039
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at DD_DDHC 20 0.756811 40.834200 90.959500 46.034500 72.251500 20.098200 602.319000 49.284200 108.047000 100.018000 301.224000 64.120400 221.537000 23.130578 41.707901
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at DD_DDHC 20 0.836624 9.400510 72.882800 21.485400 68.089700 36.099800 249.870000 53.862400 48.102000 81.901600 39.762200 30.358000 118.116000 14.152795 17.934430
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at DD_DDHC 20 0.830285 19.815600 23.445500 33.969000 57.803900 60.314100 111.285000 24.836500 39.180500 41.920400 21.642200 24.705200 75.968500 23.681170 9.686834
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at DD_DDHC 14 0.579111 147.799000 61.318400 218.947000 357.947000 326.973000 274.766000 144.192000 238.520000 366.305000 131.772000 150.250000 417.527000 9.106939 28.249356
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at DD_DDHC 20 0.782652 307.604000 1398.450000 517.789000 570.594000 411.076000 1996.900000 218.208000 475.777000 497.795000 269.800000 274.925000 1237.280000 15.818609 137.565458
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at DD_DDHC 20 0.821431 44.366500 734.392000 98.721600 242.938000 60.247000 1902.680000 92.956600 235.855000 191.007000 79.085300 106.907000 750.354000 15.065722 162.050586
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at DD_DDHC 19 0.709344 782.983000 865.613000 1365.210000 1919.010000 1474.880000 1810.190000 635.728000 964.163000 1684.030000 641.096000 1424.010000 2678.520000 1.583768 197.802093
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at DD_DDHC 20 0.857461 1529.340000 3635.010000 2717.640000 2742.750000 2668.860000 5915.320000 2804.410000 3596.680000 3875.170000 3523.560000 3560.800000 5720.310000 22.846751 305.434499
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at DD_DDHC 20 0.846108 264.012000 918.646000 517.134000 542.667000 503.915000 2023.660000 692.369000 1251.160000 1141.330000 1395.080000 754.585000 2351.190000 13.869119 147.590798
TAIR:ATCG01280 - - - - TAIR9 244989_s_at DD_DDHC 14 0.480555 7.079420 7.540900 7.869460 6.761560 11.112500 6.824260 9.300330 6.974200 6.772280 12.715400 6.940330 7.570280 7.982092 0.478841
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at DD_DDHC 12 0.673559 17.332300 14.869800 16.414100 15.511500 10.561200 11.835500 9.814390 17.462200 20.738000 86.663500 10.238600 17.426800 6.862641 6.259544
* Row count is limited to 100.