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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LIGHT5_znknOX
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LIGHT5_znknOX_0_hours label:LIGHT5_znknOX_4_hours label:LIGHT5_znknOX_8_hours label:LIGHT5_znknOX_12_hours label:LIGHT5_znknOX_16_hours label:LIGHT5_znknOX_20_hours label:LIGHT5_znknOX_24_hours label:LIGHT5_znknOX_28_hours label:LIGHT5_znknOX_32_hours label:LIGHT5_znknOX_36_hours label:LIGHT5_znknOX_40_hours label:LIGHT5_znknOX_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LIGHT5_znknOX 20 0.899634 7.000000 8.000000 6.000000 8.000000 7.000000 11.000000 7.249750 7.396580 5.534350 7.891350 7.044090 11.069000 13.894206 0.753423
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LIGHT5_znknOX 20 0.787956 5.000000 5.000000 4.000000 6.000000 5.000000 7.000000 4.585020 5.219720 3.902860 6.188380 5.156620 7.421050 23.532737 0.469363
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LIGHT5_znknOX 17 0.886831 5.000000 5.000000 5.000000 5.000000 6.000000 6.000000 4.684160 4.926270 4.668090 5.361030 6.486550 5.520950 10.993935 0.329867
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LIGHT5_znknOX 16 0.836188 4.000000 6.000000 4.000000 4.000000 8.000000 4.000000 4.071720 6.521020 4.248160 3.663060 7.857410 3.749190 9.896388 0.240303
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LIGHT5_znknOX 18 0.939013 5.000000 4.000000 4.000000 5.000000 5.000000 5.000000 4.902550 4.359030 4.353820 5.316160 4.899720 5.159670 11.630766 0.242649
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LIGHT5_znknOX 17 0.866447 4.000000 5.000000 4.000000 4.000000 6.000000 5.000000 3.929520 5.113850 4.194110 3.623000 6.374050 4.841250 11.999989 0.281988
TAIR:ATMG00710 - - - - TAIR9 244907_at LIGHT5_znknOX 16 0.915286 6.000000 7.000000 7.000000 7.000000 9.000000 7.000000 6.376840 7.642440 6.792990 6.756850 9.426900 6.504150 3.230519 0.380406
TAIR:ATMG00720 - - - - TAIR9 244908_at LIGHT5_znknOX 0 0.612548 5.000000 6.000000 5.000000 4.000000 6.000000 4.000000 4.759520 5.744940 4.932620 3.642520 5.586540 4.130500 21.510890 0.177954
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LIGHT5_znknOX 3 0.906212 4.000000 4.000000 4.000000 4.000000 3.000000 4.000000 4.384390 4.161490 3.692600 3.711490 2.994580 4.277440 20.251501 0.205391
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LIGHT5_znknOX 10 0.913889 4.000000 5.000000 5.000000 5.000000 5.000000 4.000000 3.845390 5.394660 4.658120 5.236810 4.511880 3.814930 3.371761 0.309787
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LIGHT5_znknOX 8 0.727846 116.000000 111.000000 194.000000 99.000000 90.000000 175.000000 108.014000 110.893000 179.444000 92.630900 90.961900 157.830000 13.649345 6.479756
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LIGHT5_znknOX 3 0.698617 5.000000 6.000000 4.000000 5.000000 5.000000 4.000000 5.318010 5.460630 3.806350 4.683810 5.287870 3.732470 20.824572 0.133505
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LIGHT5_znknOX 16 0.810775 6.000000 11.000000 6.000000 6.000000 14.000000 7.000000 6.582860 11.857800 5.849820 6.214870 14.933000 7.113510 11.198610 0.615300
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LIGHT5_znknOX 4 0.616625 5.000000 6.000000 5.000000 5.000000 6.000000 5.000000 5.231440 5.707880 5.045320 5.144560 5.515450 4.568890 0.362384 0.048489
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LIGHT5_znknOX 2 0.668388 6.000000 6.000000 5.000000 5.000000 6.000000 5.000000 5.847620 5.448140 4.966930 5.227550 5.577940 5.006690 18.355089 0.131823
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LIGHT5_znknOX 4 0.721134 4.000000 7.000000 5.000000 5.000000 6.000000 6.000000 3.661270 7.020470 4.653370 5.153290 5.851510 5.407790 3.726954 0.053368
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LIGHT5_znknOX 21 0.672776 5.000000 6.000000 5.000000 5.000000 6.000000 6.000000 5.380890 6.319320 4.767780 5.491590 5.860080 5.404460 14.839197 0.115417
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LIGHT5_znknOX 1 0.879788 87.000000 76.000000 89.000000 59.000000 75.000000 87.000000 85.380400 73.548500 94.240800 56.594900 79.084500 89.433300 18.146934 4.262633
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LIGHT5_znknOX 1 0.697165 33.000000 47.000000 41.000000 25.000000 36.000000 58.000000 30.754700 49.588500 42.564900 26.042700 35.237100 52.929300 18.170324 3.259065
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LIGHT5_znknOX 22 0.693170 7.000000 11.000000 5.000000 6.000000 10.000000 7.000000 6.772790 10.955700 5.411940 5.526520 10.581900 6.521690 16.765367 0.394429
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LIGHT5_znknOX 12 0.839274 6.000000 5.000000 4.000000 8.000000 5.000000 6.000000 6.157140 4.540000 4.393080 7.711150 5.072130 5.605040 9.711543 0.327192
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LIGHT5_znknOX 13 0.897963 6.000000 5.000000 5.000000 7.000000 6.000000 5.000000 5.483420 4.516050 4.655300 7.325520 5.604340 4.768420 7.764323 0.356499
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LIGHT5_znknOX 3 0.594467 12.000000 14.000000 9.000000 12.000000 14.000000 10.000000 11.205100 13.743000 9.680310 11.196900 12.884600 9.480900 17.771985 0.069932
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LIGHT5_znknOX 15 0.807858 5.000000 4.000000 4.000000 5.000000 6.000000 4.000000 5.492800 3.667360 4.235220 4.664330 6.260660 3.740520 10.280315 0.328527
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LIGHT5_znknOX 7 0.663462 7.000000 7.000000 5.000000 7.000000 6.000000 5.000000 7.691590 7.193320 5.154930 7.183060 6.366670 4.532630 13.842757 0.199508
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LIGHT5_znknOX 16 0.777350 6.000000 7.000000 6.000000 8.000000 7.000000 8.000000 6.471220 7.115580 6.490700 7.220390 7.495010 8.579350 11.132188 0.330961
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LIGHT5_znknOX 17 0.895364 114.000000 116.000000 109.000000 94.000000 145.000000 122.000000 116.293000 104.429000 99.205800 98.748800 149.192000 133.737000 12.872775 8.987242
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LIGHT5_znknOX 22 0.702469 3.000000 5.000000 3.000000 3.000000 5.000000 4.000000 3.218140 5.134740 2.754240 3.087890 5.018710 4.333770 21.685751 0.216285
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LIGHT5_znknOX 20 0.894479 6.000000 6.000000 4.000000 6.000000 5.000000 6.000000 5.904070 6.091220 3.743460 5.916210 5.183170 6.367770 15.609119 0.334605
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LIGHT5_znknOX 3 0.851741 2591.000000 2361.000000 2646.000000 1887.000000 2144.000000 2306.000000 2351.370000 2551.870000 2515.830000 1776.080000 1943.980000 2123.980000 21.031949 157.571671
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LIGHT5_znknOX 2 0.874426 509.000000 447.000000 617.000000 362.000000 290.000000 513.000000 475.714000 439.984000 584.396000 332.299000 276.093000 506.319000 21.362728 47.081820
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LIGHT5_znknOX 3 0.922988 83.000000 95.000000 110.000000 82.000000 39.000000 93.000000 89.740400 94.285900 115.409000 85.288700 41.550200 92.000300 22.863256 11.258455
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LIGHT5_znknOX 4 0.855654 7876.000000 7615.000000 9680.000000 8402.000000 6084.000000 8023.000000 7809.610000 8219.520000 8983.300000 8763.540000 5842.740000 8693.530000 0.375041 424.560573
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LIGHT5_znknOX 5 0.826394 3197.000000 2760.000000 4441.000000 2756.000000 1523.000000 2205.000000 3010.680000 2911.280000 4181.660000 2579.360000 1539.650000 1999.030000 0.020511 507.156118
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LIGHT5_znknOX 8 0.968884 58.000000 32.000000 179.000000 42.000000 11.000000 44.000000 53.732500 31.609500 179.390000 40.912400 11.788400 42.579300 1.183434 23.690200
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LIGHT5_znknOX 5 0.976692 346.000000 420.000000 367.000000 269.000000 206.000000 184.000000 330.943000 402.442000 345.168000 265.104000 190.084000 179.724000 22.989372 57.932455
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LIGHT5_znknOX 8 0.868176 300.000000 206.000000 589.000000 145.000000 77.000000 259.000000 326.154000 189.779000 536.737000 155.947000 73.678600 268.592000 12.767215 62.104540
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LIGHT5_znknOX 8 0.812749 2407.000000 2173.000000 3723.000000 1793.000000 1303.000000 2729.000000 2491.410000 1989.520000 4048.390000 1837.010000 1296.240000 2878.010000 13.112605 280.850895
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LIGHT5_znknOX 4 0.879256 4.000000 5.000000 4.000000 4.000000 4.000000 4.000000 3.690120 4.565560 3.980390 3.601670 3.820780 4.174700 21.450949 0.142457
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LIGHT5_znknOX 21 0.765591 4.000000 5.000000 3.000000 4.000000 5.000000 4.000000 3.756420 5.140730 2.787440 3.995280 5.032730 3.766640 22.239407 0.150777
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LIGHT5_znknOX 20 0.972634 8.000000 6.000000 7.000000 7.000000 8.000000 15.000000 8.562240 6.142230 6.650240 7.085680 7.317020 15.960100 13.885326 1.678718
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LIGHT5_znknOX 6 0.974434 4.000000 5.000000 5.000000 4.000000 4.000000 4.000000 3.910380 4.952020 4.959880 3.616750 4.074490 3.802630 23.832014 0.291467
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LIGHT5_znknOX 4 0.762909 5.000000 6.000000 5.000000 6.000000 5.000000 5.000000 5.246150 6.585390 5.056910 5.672120 5.487890 5.037270 0.794653 0.156159
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LIGHT5_znknOX 4 0.629025 5.000000 6.000000 5.000000 5.000000 6.000000 5.000000 4.805740 5.829790 4.649960 4.527760 5.680290 4.610080 16.250979 0.030917
TAIR:ATMG00150 - - - - TAIR9 244949_at LIGHT5_znknOX 8 0.527764 5.000000 5.000000 5.000000 5.000000 5.000000 5.000000 4.638630 5.245380 4.790780 5.468210 4.816480 4.576970 3.491470 0.075972
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LIGHT5_znknOX 4 0.675784 8.000000 8.000000 8.000000 7.000000 8.000000 7.000000 8.243860 8.147340 7.858160 6.839180 8.136690 6.575010 21.829374 0.196410
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LIGHT5_znknOX 16 0.990074 13.000000 12.000000 13.000000 24.000000 26.000000 24.000000 12.474000 12.439700 13.832600 24.732900 27.148000 26.004400 9.994451 4.326975
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LIGHT5_znknOX 21 0.800881 5.000000 5.000000 4.000000 5.000000 6.000000 5.000000 4.752920 5.104280 3.613300 4.724530 5.918110 4.860630 23.734195 0.293800
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LIGHT5_znknOX 20 0.896751 6.000000 6.000000 6.000000 5.000000 5.000000 8.000000 5.964210 6.574650 5.555180 5.024150 5.272330 8.630760 16.459577 0.509997
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LIGHT5_znknOX 14 0.980653 5.000000 5.000000 6.000000 7.000000 7.000000 6.000000 5.066650 4.786910 5.780610 7.267660 6.775370 6.349560 8.248832 0.592280
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LIGHT5_znknOX 22 0.705100 4.000000 5.000000 4.000000 4.000000 5.000000 5.000000 4.243570 5.378830 4.136570 3.990200 4.987530 4.594090 15.460249 0.124716
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LIGHT5_znknOX 19 0.801987 6.000000 6.000000 4.000000 6.000000 8.000000 7.000000 5.443100 6.515670 3.692920 6.517130 8.284080 7.492160 12.184079 0.763541
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LIGHT5_znknOX 4 0.784658 5.000000 14.000000 6.000000 5.000000 11.000000 5.000000 4.502250 14.711500 6.021310 5.388130 11.897200 4.875370 23.477840 0.579891
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LIGHT5_znknOX 19 0.608484 5.000000 6.000000 5.000000 5.000000 5.000000 6.000000 4.553330 5.555040 4.784200 4.836730 5.495910 5.770070 15.804558 0.123026
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LIGHT5_znknOX 7 0.762625 7.000000 9.000000 10.000000 8.000000 8.000000 9.000000 6.679730 9.789130 10.814500 8.197800 8.596020 9.233710 2.217527 0.412033
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LIGHT5_znknOX 5 0.828763 2250.000000 1936.000000 2389.000000 1776.000000 1747.000000 1341.000000 2147.190000 1895.160000 2616.690000 1641.830000 1601.410000 1313.630000 23.929649 204.547312
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LIGHT5_znknOX 4 0.873378 5322.000000 4948.000000 5459.000000 4132.000000 4141.000000 4775.000000 5122.050000 5178.500000 5996.470000 3832.080000 3996.190000 4330.160000 21.902640 367.156761
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LIGHT5_znknOX 23 0.830603 5440.000000 5272.000000 4838.000000 4623.000000 4832.000000 5193.000000 4957.570000 5311.320000 4935.410000 4457.980000 5290.690000 5368.310000 17.446119 163.453344
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LIGHT5_znknOX 4 0.753439 4555.000000 4803.000000 5606.000000 5270.000000 4072.000000 5611.000000 4479.370000 4954.070000 5197.550000 5413.680000 3908.090000 5630.970000 1.669517 106.625921
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LIGHT5_znknOX 4 0.809789 1963.000000 2029.000000 2526.000000 2305.000000 1485.000000 2300.000000 2039.750000 1899.960000 2516.230000 2312.960000 1457.950000 2498.660000 0.860366 91.036903
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LIGHT5_znknOX 4 0.799949 1327.000000 1414.000000 1260.000000 923.000000 1245.000000 836.000000 1259.450000 1283.290000 1361.680000 832.873000 1186.590000 869.794000 22.247429 95.110432
TAIR:ATCG00600 - - - - TAIR9 244966_at LIGHT5_znknOX 20 0.956366 47.000000 49.000000 59.000000 30.000000 38.000000 129.000000 47.384200 47.788200 53.274800 28.288900 35.074900 117.624000 15.348750 12.481750
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LIGHT5_znknOX 16 0.690295 9530.000000 8544.000000 8860.000000 8482.000000 9429.000000 8831.000000 8705.800000 8654.990000 8835.360000 8912.270000 9724.430000 8086.880000 10.184910 95.523156
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LIGHT5_znknOX 9 0.890623 1440.000000 1393.000000 2437.000000 1700.000000 828.000000 1483.000000 1315.550000 1261.960000 2515.610000 1807.940000 758.466000 1550.510000 10.368406 236.896151
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LIGHT5_znknOX 7 0.864405 1093.000000 1095.000000 1454.000000 1203.000000 659.000000 887.000000 992.502000 1128.560000 1546.150000 1193.960000 629.791000 842.681000 0.939250 164.085050
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LIGHT5_znknOX 3 0.977069 172.000000 216.000000 146.000000 89.000000 75.000000 107.000000 177.127000 237.554000 144.444000 93.765900 73.186500 113.447000 21.256898 35.974162
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LIGHT5_znknOX 2 0.830333 1984.000000 2045.000000 2560.000000 1654.000000 1281.000000 2634.000000 1991.050000 1974.060000 2636.730000 1576.730000 1396.330000 2548.430000 20.655295 152.790606
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LIGHT5_znknOX 7 0.912751 1066.000000 1472.000000 2633.000000 981.000000 475.000000 1368.000000 1057.520000 1367.660000 2742.360000 941.221000 435.604000 1421.810000 0.123981 325.985326
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LIGHT5_znknOX 7 0.986658 366.000000 626.000000 929.000000 327.000000 306.000000 367.000000 356.999000 566.380000 1019.740000 321.486000 278.424000 382.876000 0.535797 131.689444
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LIGHT5_znknOX 3 0.776874 105.000000 73.000000 86.000000 72.000000 54.000000 80.000000 100.827000 75.003400 89.145700 78.159700 56.236000 77.406600 20.413276 6.782730
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LIGHT5_znknOX 7 0.947142 3205.000000 3432.000000 4612.000000 3137.000000 2716.000000 2685.000000 3220.670000 3114.370000 4694.850000 3044.130000 2846.930000 2710.430000 1.069926 367.582182
TAIR:ATCG00720 - - - - PPDB 244976_at LIGHT5_znknOX 6 0.780916 8744.000000 9073.000000 9306.000000 8602.000000 8279.000000 7847.000000 8488.110000 8438.520000 8722.110000 9274.600000 7569.530000 8285.020000 0.924634 264.568172
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LIGHT5_znknOX 2 0.792320 8.000000 11.000000 9.000000 7.000000 7.000000 10.000000 7.924920 9.913010 9.835300 7.445960 7.297240 10.085900 20.709758 0.594419
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LIGHT5_znknOX 7 0.814341 3251.000000 2948.000000 3619.000000 2890.000000 2567.000000 3056.000000 2995.670000 3212.590000 3612.870000 2927.820000 2735.810000 3090.860000 12.707462 142.648506
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LIGHT5_znknOX 9 0.899877 761.000000 744.000000 2076.000000 969.000000 233.000000 1031.000000 691.615000 702.213000 2264.820000 906.067000 240.953000 1083.650000 10.616694 246.837228
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LIGHT5_znknOX 8 0.925224 384.000000 506.000000 1233.000000 525.000000 144.000000 471.000000 394.145000 534.949000 1300.420000 514.490000 136.524000 479.269000 1.222516 178.181349
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LIGHT5_znknOX 7 0.979528 147.000000 256.000000 505.000000 145.000000 77.000000 163.000000 151.542000 234.732000 541.105000 139.668000 79.497800 168.341000 0.732541 77.118761
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LIGHT5_znknOX 7 0.980102 204.000000 265.000000 687.000000 115.000000 128.000000 180.000000 199.749000 277.983000 727.254000 103.533000 135.771000 182.187000 0.659982 97.528981
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LIGHT5_znknOX 7 0.944469 567.000000 740.000000 1192.000000 434.000000 293.000000 631.000000 515.379000 724.389000 1275.660000 429.407000 293.271000 569.717000 23.949504 154.819971
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LIGHT5_znknOX 9 0.974093 1184.000000 1107.000000 2667.000000 1356.000000 917.000000 1235.000000 1111.720000 1157.800000 2832.310000 1473.010000 998.642000 1275.700000 2.177462 286.128246
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LIGHT5_znknOX 8 0.971042 339.000000 324.000000 1494.000000 373.000000 55.000000 347.000000 352.203000 354.215000 1418.460000 335.875000 52.649900 313.600000 10.710076 215.884403
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LIGHT5_znknOX 8 0.777583 2033.000000 1518.000000 2340.000000 1567.000000 1631.000000 1820.000000 1896.480000 1368.820000 2217.620000 1462.740000 1734.730000 1754.630000 13.409262 39.003432
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LIGHT5_znknOX 8 0.915878 5384.000000 5182.000000 6977.000000 4971.000000 4884.000000 5325.000000 5826.550000 5451.130000 7143.730000 4822.560000 4600.500000 5085.810000 12.123732 350.819685
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LIGHT5_znknOX 8 0.940354 3117.000000 3153.000000 5384.000000 3353.000000 2859.000000 3723.000000 3258.110000 3033.840000 5311.300000 3030.450000 2586.580000 3620.930000 10.644477 314.987011
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LIGHT5_znknOX 5 0.923373 6.000000 7.000000 7.000000 5.000000 5.000000 6.000000 6.162920 7.485360 6.664330 5.468760 4.605030 5.774280 22.097095 0.556216
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LIGHT5_znknOX 5 0.968755 19.000000 23.000000 25.000000 14.000000 14.000000 14.000000 20.097800 24.928000 25.945400 15.318100 13.029500 12.604000 23.225172 3.333252
* Row count is limited to 100.