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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LL23_LDHH
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LL23_LDHH_0_hours label:LL23_LDHH_4_hours label:LL23_LDHH_8_hours label:LL23_LDHH_12_hours label:LL23_LDHH_16_hours label:LL23_LDHH_20_hours label:LL23_LDHH_24_hours label:LL23_LDHH_28_hours label:LL23_LDHH_32_hours label:LL23_LDHH_36_hours label:LL23_LDHH_40_hours label:LL23_LDHH_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LL23_LDHH 23 0.539306 7.825340 8.200760 6.487770 7.085220 8.181430 7.163380 6.984310 7.507780 7.546020 5.891990 7.088090 6.580550 19.220979 0.167398
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LL23_LDHH 11 0.615081 5.942000 6.606300 6.563090 8.326570 5.841570 6.497420 6.078040 6.248750 6.212760 6.153240 5.389290 6.118120 8.787359 0.193177
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LL23_LDHH 22 0.582008 5.823660 5.014720 6.032240 4.668810 5.046500 5.640950 5.793330 4.380800 5.426810 5.884420 4.066050 6.353160 17.437879 0.124072
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LL23_LDHH 20 0.353100 6.340650 5.482480 5.381530 7.989290 6.114170 6.624860 6.622130 6.784250 6.640340 5.668140 6.323690 6.381390 1.070469 0.086777
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LL23_LDHH 5 0.646491 4.706810 5.590940 4.428400 4.870380 4.604990 4.649290 5.929950 5.753430 5.159520 4.816230 5.226680 5.792610 17.002003 0.184037
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LL23_LDHH 4 0.407346 6.476880 6.369370 5.705570 5.923680 5.077940 5.546260 4.680970 4.731760 5.580330 5.682890 5.019950 5.929970 23.208180 0.059950
TAIR:ATMG00710 - - - - TAIR9 244907_at LL23_LDHH 3 0.927029 7.149370 9.629660 7.105170 5.848300 5.988540 7.081260 7.549750 9.405650 6.444660 5.510340 6.496110 5.593290 21.076596 0.743155
TAIR:ATMG00720 - - - - TAIR9 244908_at LL23_LDHH 3 0.690420 3.984830 4.962600 3.857410 4.455200 3.873640 4.433590 4.617920 4.616370 4.023780 4.052220 4.429220 3.863370 20.557593 0.100039
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LL23_LDHH 10 0.648967 4.338760 3.963950 4.306440 5.314070 4.583060 4.144550 4.650170 5.228660 5.195890 3.571350 4.303630 4.223660 11.067675 0.107100
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LL23_LDHH 16 0.695372 4.336810 4.065520 4.304340 4.509090 5.445960 4.194750 4.178040 4.316500 4.358670 4.220310 4.574470 5.120800 10.691613 0.175532
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LL23_LDHH 2 0.434797 40.617100 14.721500 43.421000 19.930200 27.632600 30.074800 19.047700 24.783200 27.132800 19.308300 18.515400 37.461600 18.758924 1.325744
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LL23_LDHH 4 0.500514 5.149770 5.965080 5.225760 5.994600 4.621370 5.173280 4.972250 5.459850 4.935510 4.537850 5.517350 4.418910 0.123257 0.133964
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LL23_LDHH 6 0.484528 5.111700 7.314980 6.283180 7.156060 7.102980 6.834440 7.653310 8.066060 5.786280 6.650840 6.634160 8.381870 20.925355 0.156482
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LL23_LDHH 3 0.589727 4.149820 4.328010 3.512620 3.872070 3.605000 3.592680 3.803940 3.941970 3.752790 4.119720 3.896280 3.839060 21.369043 0.056310
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LL23_LDHH 21 0.723764 3.425670 3.355110 3.417910 2.956930 3.245600 4.033540 3.466280 3.324690 3.151180 3.470410 3.182040 3.465850 16.061068 0.100682
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LL23_LDHH 12 0.363968 3.467330 3.692770 3.857680 3.932810 3.490480 3.942150 3.573700 3.783760 3.515990 3.377090 3.792700 3.608810 6.630082 0.007058
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LL23_LDHH 15 0.841166 4.154150 4.097690 3.819280 4.480130 4.479800 4.269060 4.034360 4.139100 4.418100 4.498240 3.968600 3.654060 6.321772 0.088045
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LL23_LDHH 3 0.536976 126.351000 205.704000 121.799000 132.976000 93.776500 132.929000 137.241000 78.008200 70.095800 71.186600 57.590100 100.784000 16.123234 13.847375
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LL23_LDHH 22 0.554426 145.496000 43.979100 145.555000 47.030400 96.729600 105.177000 71.992100 38.555600 48.551900 49.545400 54.526300 121.525000 15.302128 11.265949
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LL23_LDHH 22 0.755656 5.782560 5.151210 5.082190 4.236820 5.109250 6.444380 7.039790 4.749000 5.845390 4.512920 5.400030 5.676530 16.688124 0.386288
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LL23_LDHH 21 0.549371 5.315270 4.920320 4.987480 5.527880 5.051320 5.589800 4.758820 6.021400 4.234190 4.732650 5.982300 5.285750 22.568853 0.135383
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LL23_LDHH 20 0.755362 7.390660 8.287550 7.804410 7.975070 7.494440 10.513600 8.827540 7.844180 8.099550 8.260920 8.245770 8.723380 14.393786 0.262089
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LL23_LDHH 3 0.563065 12.328700 15.141700 9.554390 13.226600 9.820280 9.618850 12.497000 12.663100 11.839300 12.782800 13.341100 11.447600 23.149720 0.367802
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LL23_LDHH 0 0.411934 4.360290 4.457670 4.034300 4.361940 4.476670 4.158030 4.393710 3.813720 4.036820 3.860500 4.132110 3.930920 20.640405 0.040213
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LL23_LDHH 22 0.369253 6.202290 7.033170 7.387350 6.074720 8.380200 7.107730 9.255030 7.015120 7.672630 7.307840 6.690300 7.146980 17.387207 0.098010
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LL23_LDHH 2 0.594905 12.171300 9.799660 9.848060 8.556080 9.097010 10.705800 8.012050 9.545530 8.909740 8.385150 6.725170 9.916730 17.093306 0.508937
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LL23_LDHH 2 0.794179 123.558000 135.811000 162.645000 88.357800 86.313500 145.490000 118.192000 112.125000 113.611000 81.318200 93.621000 110.204000 20.578858 10.226281
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LL23_LDHH 22 0.758610 3.838360 3.447980 3.259140 3.440740 3.825820 3.460510 3.801780 3.952560 2.959650 2.918080 3.530100 3.404390 16.816241 0.142338
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LL23_LDHH 20 0.726441 6.171620 5.603780 7.225810 6.195280 6.058280 7.175260 6.050890 6.007090 6.594400 7.034830 5.731570 8.228330 0.754357 0.129709
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LL23_LDHH 2 0.445393 1837.200000 905.729000 2024.730000 1079.620000 853.443000 1630.790000 966.739000 1104.920000 1173.960000 1035.970000 1194.100000 1421.220000 17.396307 50.340917
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LL23_LDHH 18 0.549381 1927.560000 1165.380000 1123.780000 1606.880000 1159.330000 1465.430000 1181.970000 950.433000 862.042000 1314.310000 1057.640000 1132.390000 14.379847 63.375311
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LL23_LDHH 23 0.427280 284.655000 181.397000 182.143000 227.543000 198.502000 221.617000 182.415000 232.320000 185.159000 205.824000 150.101000 194.720000 18.581394 7.653274
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LL23_LDHH 18 0.708378 5849.030000 5206.580000 5925.100000 5927.780000 6812.730000 6114.840000 5679.200000 6225.790000 6527.070000 5914.920000 6759.640000 6842.470000 1.752980 212.928845
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LL23_LDHH 20 0.591223 3150.390000 2740.400000 3277.330000 3183.450000 3106.600000 3569.010000 2541.760000 3180.040000 3465.890000 3061.580000 2941.110000 3470.270000 3.463661 49.573486
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LL23_LDHH 19 0.740121 176.856000 95.573300 219.184000 141.314000 173.113000 227.918000 88.669900 119.068000 121.292000 115.923000 136.634000 255.828000 12.594119 17.413500
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LL23_LDHH 20 0.556260 280.135000 186.851000 265.800000 251.644000 198.916000 360.199000 153.113000 182.704000 253.200000 187.564000 158.151000 234.756000 14.322834 5.580837
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LL23_LDHH 1 0.448077 299.861000 62.721900 376.322000 48.091000 173.673000 238.412000 112.506000 74.355600 110.432000 79.927600 79.442600 192.668000 18.983660 17.105084
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LL23_LDHH 0 0.499936 2425.500000 879.441000 3302.280000 743.689000 2295.780000 2752.460000 1815.020000 925.594000 1874.860000 1034.960000 1465.750000 1587.950000 20.820852 120.045735
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LL23_LDHH 5 0.725706 6.825330 8.196440 7.741850 6.532060 7.488120 6.903270 7.990610 8.370360 7.372550 7.518020 7.407280 6.775190 22.788175 0.236032
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LL23_LDHH 21 0.821319 3.958450 3.515880 3.843340 3.591980 4.138040 4.391900 5.100290 3.885830 3.550070 3.804400 3.787270 4.435390 15.421330 0.226041
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LL23_LDHH 4 0.565740 8.357270 8.182130 8.296170 7.214800 5.808110 7.084190 7.762720 7.709240 8.030100 8.800420 7.604050 9.769710 14.905140 0.194415
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LL23_LDHH 18 0.795177 7.494460 8.369150 7.702400 8.623260 11.673100 10.697900 9.823770 8.889000 10.425200 8.170700 10.167500 12.285400 12.308179 0.683363
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LL23_LDHH 18 0.526913 4.331030 4.619540 3.834080 4.144600 4.322550 5.083890 3.929510 5.104870 4.412480 4.237130 5.381350 4.573910 13.751880 0.111935
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LL23_LDHH 5 0.516143 6.049930 6.321830 6.040180 6.312220 5.635440 5.906680 7.045500 7.244530 5.808970 6.722240 7.132900 7.436830 19.769657 0.112451
TAIR:ATMG00150 - - - - TAIR9 244949_at LL23_LDHH 4 0.745155 4.030030 5.445740 3.547210 3.917160 4.239590 3.495520 3.851750 4.464150 3.597300 4.576190 3.996210 3.745030 23.245551 0.116144
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LL23_LDHH 4 0.447194 8.918930 9.339510 9.228710 9.078960 8.624960 10.098600 10.122600 10.468300 9.685410 9.795310 10.570400 10.483500 20.330611 0.132945
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LL23_LDHH 11 0.455084 30.579900 34.079900 42.045000 46.753900 26.105600 33.032600 19.166200 36.827600 23.274100 24.685300 38.122500 32.097000 4.808532 1.615293
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LL23_LDHH 17 0.388826 3.982610 4.030510 3.697710 4.299740 3.901320 3.946480 3.893510 3.539090 4.131040 3.845860 3.990250 3.982050 3.078495 0.043957
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LL23_LDHH 0 0.358187 6.767020 6.676350 7.299230 5.547320 6.439930 7.085900 5.453830 6.823850 5.748550 6.245300 6.497860 5.792490 21.027369 0.074160
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LL23_LDHH 21 0.824303 6.446780 6.178910 5.534340 5.180480 5.887060 6.668350 6.233940 5.583600 6.002550 5.106490 5.561270 8.980350 15.631748 0.471689
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LL23_LDHH 4 0.583983 4.109750 4.226260 4.040080 4.043540 3.298140 4.192820 3.448790 4.490620 3.636990 3.756540 4.083140 3.769380 21.865579 0.089411
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LL23_LDHH 22 0.521180 6.576210 6.964370 5.491130 6.406410 6.348370 6.221670 7.225990 6.632610 6.823750 6.431010 7.106130 8.269000 20.644099 0.229912
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LL23_LDHH 5 0.537101 6.127090 5.885550 6.576810 6.004270 5.760900 6.742790 6.114480 8.272890 5.945190 6.359980 5.774270 5.427360 22.569095 0.230710
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LL23_LDHH 23 0.846102 6.894040 5.422860 5.723060 5.742180 6.364490 5.555040 7.739070 5.632630 5.888590 5.272680 5.355670 6.409310 17.048171 0.297718
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LL23_LDHH 22 0.438448 19.973600 11.840900 18.416500 10.252200 11.422700 18.839500 10.900600 7.950760 11.311500 13.426200 9.082800 11.321600 17.465762 0.593750
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LL23_LDHH 21 0.687381 2638.400000 2398.710000 2498.750000 2248.510000 2456.940000 2803.480000 2771.920000 2685.880000 2425.100000 2673.450000 2793.790000 2735.120000 15.100066 81.871906
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LL23_LDHH 18 0.639454 5144.350000 4973.290000 6150.830000 4863.780000 5988.000000 5877.100000 5564.660000 5821.020000 5729.580000 5490.210000 6069.050000 6549.300000 11.991819 130.534143
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LL23_LDHH 0 0.501688 3222.190000 2648.760000 3903.400000 2699.710000 2964.570000 3205.890000 3261.420000 2909.410000 3180.890000 2806.670000 3429.530000 3542.830000 21.193618 48.664575
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LL23_LDHH 8 0.600042 3975.750000 5213.560000 4116.910000 5734.680000 3938.400000 4303.120000 4218.980000 5116.900000 4288.930000 3879.760000 3331.980000 3883.960000 12.001278 236.629908
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LL23_LDHH 6 0.832907 1205.030000 1283.680000 1167.160000 1228.010000 882.069000 884.216000 908.211000 1245.870000 1106.680000 955.851000 762.670000 761.857000 23.831269 109.267504
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LL23_LDHH 23 0.413045 1893.110000 1499.940000 2009.760000 1531.550000 1315.550000 1900.090000 1743.960000 1303.720000 1590.370000 1386.630000 1785.140000 1381.550000 18.172551 34.295820
TAIR:ATCG00600 - - - - TAIR9 244966_at LL23_LDHH 16 0.710489 275.874000 142.014000 230.426000 236.237000 263.536000 286.275000 212.951000 178.070000 239.246000 216.641000 185.693000 214.480000 11.640896 11.614751
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LL23_LDHH 16 0.621264 6597.690000 5854.170000 7176.770000 5717.210000 6855.750000 6737.470000 6743.920000 5594.510000 6288.040000 7092.720000 7032.460000 7984.240000 11.928851 266.813142
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LL23_LDHH 12 0.766924 3057.850000 2577.690000 3549.050000 3356.660000 3330.530000 3069.340000 3151.480000 3141.750000 3890.070000 3719.390000 3510.970000 3311.810000 6.108319 163.126835
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LL23_LDHH 15 0.724572 1820.040000 1021.020000 1618.240000 1459.000000 1613.770000 1489.420000 1333.000000 1164.710000 1792.430000 1917.520000 1949.460000 2264.030000 10.237340 138.653404
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LL23_LDHH 20 0.489830 252.092000 281.902000 285.590000 372.417000 324.560000 425.844000 236.042000 185.425000 307.201000 218.712000 204.321000 283.653000 1.735810 14.317941
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LL23_LDHH 15 0.500593 2667.710000 2007.000000 3523.820000 2593.810000 2745.030000 2732.740000 1942.220000 1858.520000 2339.450000 1789.040000 2420.670000 2358.290000 4.035388 77.447618
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LL23_LDHH 16 0.611148 870.342000 191.557000 1327.760000 502.561000 746.465000 1102.260000 836.511000 657.166000 829.511000 959.989000 667.787000 1072.230000 11.774323 42.129724
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LL23_LDHH 15 0.632264 844.062000 545.648000 1218.120000 778.926000 907.672000 1244.130000 1083.750000 897.137000 1037.560000 1071.530000 1033.540000 1080.080000 10.956370 42.492800
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LL23_LDHH 16 0.558692 32.713800 11.518500 54.383100 10.595200 35.410800 37.416100 32.941500 15.295600 28.363800 30.665000 20.364700 29.030800 12.609409 0.925512
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LL23_LDHH 20 0.689981 3127.300000 2715.020000 3114.760000 2961.740000 2751.250000 3303.790000 2723.810000 3284.010000 2988.730000 2512.960000 2680.910000 3595.650000 17.291856 89.688558
TAIR:ATCG00720 - - - - PPDB 244976_at LL23_LDHH 8 0.719242 5258.040000 6079.420000 5882.670000 5733.600000 5769.490000 5291.700000 5688.520000 6846.250000 5939.640000 5484.120000 5618.640000 6648.150000 13.622899 112.480205
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LL23_LDHH 14 0.726704 16.250100 6.929200 18.507800 45.209400 42.698500 40.276500 26.442500 29.687900 34.409200 33.077200 24.515100 21.813900 8.442774 4.809162
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LL23_LDHH 4 0.527977 1345.960000 1821.670000 1509.240000 1905.290000 1779.720000 1615.810000 1216.420000 1839.760000 1324.880000 1552.520000 1122.280000 1382.660000 2.671473 56.121586
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LL23_LDHH 10 0.561171 381.876000 764.004000 549.158000 822.739000 748.839000 479.357000 524.005000 755.638000 498.899000 451.603000 322.614000 581.389000 10.659971 33.467984
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LL23_LDHH 12 0.591840 309.851000 479.636000 486.340000 561.730000 529.909000 441.323000 373.489000 535.236000 348.190000 446.212000 355.067000 479.568000 6.658660 18.311018
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LL23_LDHH 15 0.518685 433.179000 486.174000 613.030000 644.576000 626.514000 508.330000 420.688000 506.868000 436.549000 410.802000 391.955000 604.894000 4.471752 16.503547
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LL23_LDHH 8 0.284349 648.618000 525.563000 875.987000 571.570000 727.169000 729.230000 370.340000 292.445000 393.201000 341.418000 230.689000 441.282000 10.636989 3.171244
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LL23_LDHH 8 0.309650 2255.490000 1833.980000 2889.500000 1916.270000 1752.810000 2096.790000 1295.560000 819.289000 1181.400000 996.717000 918.362000 1542.440000 15.271531 45.582634
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LL23_LDHH 20 0.664750 2459.730000 2129.780000 2991.990000 2436.940000 2522.350000 2936.290000 2466.790000 2947.630000 2590.750000 2682.400000 1855.950000 3650.840000 16.542535 59.165825
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LL23_LDHH 20 0.552705 2084.590000 2155.340000 2844.590000 2711.840000 2228.570000 2580.880000 1957.610000 2516.410000 1772.310000 2377.180000 1856.440000 3085.540000 1.980644 38.452994
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LL23_LDHH 2 0.633862 4681.410000 3176.630000 4564.750000 2900.170000 3828.280000 3829.070000 3307.070000 4099.460000 3648.940000 2958.530000 2677.010000 4403.880000 17.036322 217.279179
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LL23_LDHH 19 0.330108 6350.430000 5292.160000 7010.060000 6202.030000 6331.920000 6709.070000 4920.530000 6513.460000 5729.580000 5215.560000 5727.000000 6217.130000 1.686136 35.109702
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LL23_LDHH 10 0.809987 3714.120000 3669.140000 4443.670000 4776.900000 3818.230000 3659.380000 3154.340000 4800.750000 4185.960000 3561.820000 3296.780000 4172.260000 9.827458 184.401433
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LL23_LDHH 20 0.584306 20.715700 7.530250 11.511600 12.953800 14.009900 14.656600 13.183300 15.197700 12.743100 12.355300 17.476600 13.757200 13.956530 1.069513
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LL23_LDHH 18 0.654185 135.772000 43.903300 55.949200 80.207800 81.161300 91.746000 77.730900 63.986800 57.091000 98.499500 64.317000 70.245900 13.891532 7.098162
* Row count is limited to 100.