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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LIGHT5_HIF138_8
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LIGHT5_HIF138-8_0_hours label:LIGHT5_HIF138-8_4_hours label:LIGHT5_HIF138-8_8_hours label:LIGHT5_HIF138-8_12_hours label:LIGHT5_HIF138-8_16_hours label:LIGHT5_HIF138-8_20_hours label:LIGHT5_HIF138-8_24_hours label:LIGHT5_HIF138-8_28_hours label:LIGHT5_HIF138-8_32_hours label:LIGHT5_HIF138-8_36_hours label:LIGHT5_HIF138-8_40_hours label:LIGHT5_HIF138-8_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LIGHT5_HIF138-8 18 0.811508 7.000000 7.000000 7.000000 7.000000 8.000000 8.000000 6.484630 7.287280 7.183820 7.235050 7.761370 7.299380 1.501057 0.202314
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LIGHT5_HIF138-8 11 0.784250 4.000000 5.000000 5.000000 5.000000 6.000000 5.000000 4.015140 5.405230 5.354170 4.514690 5.551450 4.504870 6.391923 0.209209
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LIGHT5_HIF138-8 1 0.758677 7.000000 6.000000 5.000000 5.000000 6.000000 4.000000 7.384830 6.205420 5.227360 4.614820 6.555630 4.090280 19.579554 0.320914
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LIGHT5_HIF138-8 1 0.745229 9.000000 7.000000 4.000000 8.000000 4.000000 6.000000 9.689310 6.807510 4.208090 7.573670 4.332380 6.178120 18.629439 0.662155
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LIGHT5_HIF138-8 4 0.882149 5.000000 5.000000 5.000000 5.000000 4.000000 5.000000 5.385100 4.518210 5.066930 4.674000 3.756670 5.260150 15.412465 0.180579
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LIGHT5_HIF138-8 19 0.846900 5.000000 5.000000 4.000000 5.000000 6.000000 6.000000 5.030800 5.250390 3.711000 5.186370 6.429800 5.667610 12.523605 0.447022
TAIR:ATMG00710 - - - - TAIR9 244907_at LIGHT5_HIF138-8 20 0.741229 8.000000 8.000000 6.000000 9.000000 7.000000 9.000000 7.923480 8.226100 5.831530 8.994750 6.606490 9.227680 14.445762 0.339871
TAIR:ATMG00720 - - - - TAIR9 244908_at LIGHT5_HIF138-8 21 0.854796 6.000000 6.000000 5.000000 5.000000 5.000000 7.000000 5.407580 5.881580 5.094250 5.263040 5.359520 6.721460 16.259082 0.345165
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LIGHT5_HIF138-8 4 0.956737 4.000000 4.000000 4.000000 3.000000 3.000000 3.000000 3.612420 4.195950 3.751060 2.835530 3.043360 3.048820 21.936560 0.324391
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LIGHT5_HIF138-8 13 0.781640 5.000000 5.000000 5.000000 6.000000 5.000000 5.000000 5.106290 5.492360 4.896560 5.612400 5.473120 4.548370 6.718947 0.141718
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LIGHT5_HIF138-8 8 0.822099 232.000000 174.000000 297.000000 222.000000 194.000000 104.000000 217.237000 168.346000 290.078000 232.130000 186.285000 114.212000 2.400653 29.524181
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LIGHT5_HIF138-8 17 0.824565 5.000000 5.000000 4.000000 5.000000 6.000000 5.000000 4.620050 5.118390 4.383060 4.504050 5.885620 4.901780 11.988920 0.237144
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LIGHT5_HIF138-8 1 0.680095 15.000000 13.000000 7.000000 13.000000 6.000000 11.000000 16.421300 13.550100 6.588990 14.117800 5.659990 10.666100 19.366173 1.404471
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LIGHT5_HIF138-8 20 0.853845 5.000000 6.000000 4.000000 6.000000 6.000000 6.000000 5.487060 6.161760 4.243250 5.417120 5.468190 6.453620 13.770091 0.283727
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LIGHT5_HIF138-8 3 0.884194 6.000000 8.000000 5.000000 6.000000 5.000000 6.000000 6.084830 7.214120 5.123410 5.913320 5.194270 5.918260 20.531225 0.378307
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LIGHT5_HIF138-8 19 0.758686 6.000000 5.000000 4.000000 6.000000 5.000000 5.000000 5.912580 5.310540 3.890520 6.300260 4.556920 5.287660 14.656224 0.154482
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LIGHT5_HIF138-8 3 0.707598 6.000000 7.000000 5.000000 6.000000 5.000000 5.000000 5.584470 6.309880 4.977200 6.536770 5.243200 5.135070 23.021276 0.217010
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LIGHT5_HIF138-8 14 0.891909 76.000000 79.000000 98.000000 89.000000 98.000000 86.000000 75.103900 73.936800 90.042000 91.268600 97.529000 88.110300 7.558318 5.213423
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LIGHT5_HIF138-8 4 0.780690 45.000000 46.000000 53.000000 27.000000 41.000000 29.000000 41.857600 47.134400 57.353800 26.271600 44.390200 28.443700 23.211289 4.472350
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LIGHT5_HIF138-8 5 0.786213 10.000000 10.000000 7.000000 10.000000 5.000000 8.000000 10.198500 10.700600 6.732840 10.841500 5.305380 7.264950 14.315275 0.778288
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LIGHT5_HIF138-8 4 0.826444 5.000000 6.000000 5.000000 5.000000 5.000000 5.000000 5.211300 5.473490 5.162290 4.730290 4.719150 5.230000 21.091876 0.168146
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LIGHT5_HIF138-8 2 0.858271 7.000000 7.000000 5.000000 6.000000 5.000000 6.000000 7.598430 7.688600 5.105550 6.347220 4.982030 6.134460 19.495052 0.506554
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LIGHT5_HIF138-8 0 0.978798 33.000000 16.000000 13.000000 13.000000 10.000000 13.000000 30.993800 14.576700 12.838300 12.626200 10.988600 12.985700 18.713886 3.666800
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LIGHT5_HIF138-8 20 0.486509 5.000000 5.000000 5.000000 5.000000 5.000000 5.000000 5.222230 4.744460 5.279360 4.768270 5.359230 5.338180 22.880826 0.050776
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LIGHT5_HIF138-8 2 0.805498 7.000000 7.000000 5.000000 6.000000 5.000000 6.000000 6.665370 6.810020 4.626240 6.280180 4.971880 5.847390 19.173244 0.385967
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LIGHT5_HIF138-8 20 0.769367 6.000000 7.000000 7.000000 6.000000 7.000000 8.000000 5.892390 7.435310 6.900010 6.441180 6.449810 8.206850 14.920039 0.132122
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LIGHT5_HIF138-8 5 0.895558 115.000000 128.000000 130.000000 126.000000 96.000000 123.000000 121.719000 119.023000 133.639000 126.749000 97.401400 116.459000 0.074210 5.615907
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LIGHT5_HIF138-8 0 0.675798 4.000000 5.000000 4.000000 4.000000 4.000000 5.000000 3.759120 4.989380 3.755170 4.009610 3.751510 5.086730 17.847726 0.169654
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LIGHT5_HIF138-8 21 0.901124 6.000000 5.000000 4.000000 5.000000 5.000000 6.000000 6.547620 4.963430 3.896540 4.892010 4.992900 6.042000 15.500653 0.495049
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LIGHT5_HIF138-8 1 0.902413 2949.000000 2598.000000 2348.000000 2578.000000 2059.000000 2397.000000 3048.820000 2505.730000 2183.040000 2376.150000 2263.780000 2275.990000 19.345804 133.635776
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LIGHT5_HIF138-8 23 0.762420 800.000000 594.000000 779.000000 574.000000 602.000000 661.000000 844.514000 618.600000 717.810000 602.589000 585.051000 684.562000 19.380375 36.087187
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LIGHT5_HIF138-8 2 0.814759 150.000000 140.000000 171.000000 114.000000 120.000000 147.000000 161.512000 141.558000 165.996000 120.339000 129.156000 136.572000 21.207471 8.320156
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LIGHT5_HIF138-8 12 0.628861 9668.000000 7994.000000 9942.000000 8928.000000 9869.000000 8424.000000 8779.420000 8679.140000 10371.800000 8561.410000 10468.500000 8623.060000 6.521284 210.922792
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LIGHT5_HIF138-8 8 0.690601 4476.000000 3548.000000 4801.000000 4245.000000 4247.000000 3543.000000 4544.490000 3787.040000 4942.860000 4015.200000 4258.400000 3652.030000 2.842701 135.236576
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LIGHT5_HIF138-8 12 0.672071 268.000000 102.000000 343.000000 193.000000 305.000000 86.000000 260.603000 100.055000 373.018000 195.795000 310.253000 82.876000 7.254643 29.965494
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LIGHT5_HIF138-8 0 0.716329 538.000000 372.000000 442.000000 427.000000 477.000000 304.000000 558.568000 375.458000 432.224000 394.564000 482.861000 319.868000 20.466379 4.551724
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LIGHT5_HIF138-8 8 0.802564 695.000000 502.000000 1202.000000 714.000000 938.000000 557.000000 654.309000 526.831000 1249.670000 710.667000 1010.680000 540.820000 4.851565 105.761612
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LIGHT5_HIF138-8 12 0.776775 4488.000000 3815.000000 5660.000000 4278.000000 5135.000000 4047.000000 4162.070000 3864.880000 5180.210000 4500.020000 4848.310000 3825.170000 5.215710 235.248607
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LIGHT5_HIF138-8 12 0.628703 4.000000 4.000000 4.000000 4.000000 4.000000 4.000000 3.790410 3.796390 4.290780 4.017910 4.397840 3.604790 5.679759 0.072858
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LIGHT5_HIF138-8 1 0.945723 8.000000 5.000000 4.000000 5.000000 4.000000 5.000000 7.625140 5.474220 3.840370 4.593740 4.238970 4.988140 18.035191 0.685272
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LIGHT5_HIF138-8 23 0.872324 7.000000 7.000000 7.000000 6.000000 8.000000 8.000000 7.658780 7.420650 6.996740 6.185220 7.594650 7.752710 20.836478 0.312708
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LIGHT5_HIF138-8 4 0.904033 4.000000 5.000000 4.000000 4.000000 4.000000 4.000000 4.033100 4.831870 3.758160 4.320410 3.796670 3.610430 22.723438 0.166766
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LIGHT5_HIF138-8 6 0.679641 6.000000 6.000000 5.000000 6.000000 5.000000 5.000000 6.225300 5.635040 4.890530 6.580820 4.968590 4.592060 12.728355 0.144424
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LIGHT5_HIF138-8 20 0.830691 7.000000 6.000000 4.000000 6.000000 5.000000 6.000000 6.584750 6.169670 3.958670 6.078950 5.332360 5.592290 16.657167 0.376464
TAIR:ATMG00150 - - - - TAIR9 244949_at LIGHT5_HIF138-8 16 0.895946 5.000000 5.000000 4.000000 5.000000 7.000000 4.000000 5.383360 5.128960 4.089040 4.506990 7.472430 4.010330 10.675408 0.327264
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LIGHT5_HIF138-8 22 0.753720 8.000000 6.000000 5.000000 7.000000 5.000000 8.000000 7.792130 6.450230 4.507000 7.698840 4.850470 8.076530 15.920373 0.553137
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LIGHT5_HIF138-8 22 0.639043 12.000000 18.000000 12.000000 11.000000 19.000000 14.000000 12.548500 18.895400 12.278200 11.938500 18.303600 14.040000 21.179569 0.406925
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LIGHT5_HIF138-8 3 0.746711 5.000000 6.000000 5.000000 5.000000 5.000000 5.000000 5.463680 5.420350 4.841290 5.264730 4.558170 5.304730 20.776965 0.151880
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LIGHT5_HIF138-8 19 0.626418 5.000000 7.000000 6.000000 5.000000 6.000000 7.000000 4.913490 6.770310 5.919720 4.854910 6.150480 7.305330 16.811026 0.180446
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LIGHT5_HIF138-8 4 0.862323 7.000000 6.000000 7.000000 7.000000 5.000000 7.000000 6.343750 6.005070 6.477210 6.536790 5.023680 6.815520 21.720413 0.143360
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LIGHT5_HIF138-8 8 0.790946 5.000000 6.000000 5.000000 5.000000 5.000000 4.000000 4.878980 5.418940 4.820700 4.571120 5.071340 3.806480 11.966611 0.242628
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LIGHT5_HIF138-8 19 0.741621 9.000000 6.000000 4.000000 8.000000 5.000000 8.000000 9.265530 5.538260 4.045020 8.629410 5.443900 7.828260 15.090805 0.699506
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LIGHT5_HIF138-8 1 0.689849 9.000000 8.000000 5.000000 8.000000 5.000000 7.000000 9.108350 7.225910 4.643470 7.749590 4.536610 7.174370 18.510005 0.627994
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LIGHT5_HIF138-8 20 0.605203 5.000000 6.000000 5.000000 6.000000 5.000000 6.000000 5.402770 5.519490 5.015930 5.738490 4.997720 6.252020 14.752426 0.068605
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LIGHT5_HIF138-8 3 0.963117 9.000000 14.000000 7.000000 7.000000 9.000000 7.000000 9.664130 13.119000 6.836260 7.196400 8.191360 7.587170 15.398654 1.051905
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LIGHT5_HIF138-8 7 0.653142 2638.000000 2199.000000 2793.000000 2417.000000 2292.000000 2066.000000 2685.580000 2074.300000 2654.710000 2324.680000 2377.340000 1940.290000 1.360528 80.496245
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LIGHT5_HIF138-8 1 0.744000 5963.000000 5832.000000 5450.000000 5407.000000 5026.000000 5271.000000 5862.090000 5416.550000 4971.970000 5665.230000 5270.820000 4891.730000 20.910431 126.597241
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LIGHT5_HIF138-8 9 0.836727 5596.000000 5268.000000 5917.000000 5654.000000 5107.000000 5394.000000 5394.650000 5478.660000 6118.560000 5894.650000 5280.270000 5591.140000 2.433482 126.573774
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LIGHT5_HIF138-8 12 0.812312 5792.000000 6302.000000 6244.000000 6354.000000 6545.000000 6263.000000 5382.700000 6642.750000 6723.020000 6701.450000 5984.710000 6626.670000 6.932485 147.017919
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LIGHT5_HIF138-8 7 0.789075 2649.000000 2843.000000 3107.000000 2843.000000 2951.000000 2750.000000 2701.740000 2794.740000 2977.710000 2675.600000 2750.170000 2723.410000 3.119874 57.757482
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LIGHT5_HIF138-8 11 0.809608 1439.000000 1396.000000 1433.000000 1624.000000 1186.000000 1369.000000 1330.910000 1466.430000 1359.420000 1764.300000 1144.020000 1289.660000 9.600399 59.421536
TAIR:ATCG00600 - - - - TAIR9 244966_at LIGHT5_HIF138-8 7 0.937703 36.000000 56.000000 75.000000 50.000000 42.000000 44.000000 36.947100 60.737800 72.583100 46.909100 38.254400 40.644900 1.557380 7.815824
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LIGHT5_HIF138-8 4 0.740962 9091.000000 10260.000000 9258.000000 9215.000000 9025.000000 9976.000000 9660.060000 10757.900000 9461.410000 9613.190000 9057.150000 10159.300000 15.860351 206.441082
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LIGHT5_HIF138-8 12 0.707570 2856.000000 1998.000000 2766.000000 2533.000000 2989.000000 1727.000000 2673.620000 1902.650000 3004.420000 2667.880000 3270.670000 1750.280000 6.109080 166.512892
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LIGHT5_HIF138-8 7 0.864933 1653.000000 1346.000000 1701.000000 1653.000000 1407.000000 1074.000000 1655.060000 1360.860000 1709.660000 1602.780000 1273.530000 1004.800000 1.803008 110.053405
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LIGHT5_HIF138-8 9 0.922665 201.000000 154.000000 301.000000 227.000000 178.000000 209.000000 210.841000 151.964000 309.509000 249.109000 175.568000 191.782000 3.597044 19.884429
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LIGHT5_HIF138-8 7 0.810264 3208.000000 2794.000000 3383.000000 3174.000000 3015.000000 2576.000000 3299.300000 2945.510000 3169.700000 3475.340000 3109.290000 2411.460000 3.169046 126.186454
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LIGHT5_HIF138-8 8 0.877780 2921.000000 2212.000000 3247.000000 2257.000000 2455.000000 1107.000000 2713.670000 2295.340000 3034.780000 2393.920000 2670.690000 1090.090000 1.633025 274.904397
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LIGHT5_HIF138-8 9 0.829553 776.000000 541.000000 1028.000000 732.000000 628.000000 455.000000 843.591000 560.540000 1110.010000 729.445000 628.987000 419.279000 1.991934 92.244747
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LIGHT5_HIF138-8 4 0.892864 126.000000 107.000000 117.000000 90.000000 91.000000 84.000000 116.214000 102.219000 125.905000 83.964900 94.360400 89.411300 22.044397 7.728022
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LIGHT5_HIF138-8 8 0.861991 3496.000000 3467.000000 4305.000000 3810.000000 3652.000000 3125.000000 3784.160000 3434.980000 4487.940000 4014.720000 3448.310000 2898.820000 2.822293 250.979483
TAIR:ATCG00720 - - - - PPDB 244976_at LIGHT5_HIF138-8 9 0.869511 8668.000000 8771.000000 10045.000000 8904.000000 8884.000000 8323.000000 8139.580000 8711.090000 10160.700000 9598.670000 8095.270000 9128.890000 3.000177 332.393769
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LIGHT5_HIF138-8 8 0.718634 8.000000 9.000000 12.000000 7.000000 10.000000 10.000000 8.789500 9.418170 11.232800 6.954120 9.858580 9.215970 12.182626 0.186150
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LIGHT5_HIF138-8 9 0.836905 3793.000000 3202.000000 4305.000000 3730.000000 3400.000000 2729.000000 3732.220000 3294.270000 4732.940000 4027.150000 3305.270000 2964.780000 2.432807 281.440165
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LIGHT5_HIF138-8 12 0.715467 2763.000000 1387.000000 3235.000000 2573.000000 2835.000000 1221.000000 2625.880000 1318.890000 3009.290000 2554.310000 2552.920000 1226.140000 7.197801 260.890869
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LIGHT5_HIF138-8 12 0.672490 2207.000000 932.000000 2585.000000 1934.000000 1932.000000 738.000000 2154.260000 1024.170000 2829.060000 1977.410000 2109.530000 716.177000 8.150092 253.510499
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LIGHT5_HIF138-8 12 0.742272 706.000000 260.000000 881.000000 697.000000 765.000000 269.000000 747.487000 250.025000 846.349000 750.386000 717.540000 257.533000 5.308740 91.541985
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LIGHT5_HIF138-8 9 0.695694 887.000000 328.000000 1187.000000 695.000000 868.000000 276.000000 801.962000 343.098000 1247.860000 687.456000 906.806000 261.530000 4.004963 114.807930
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LIGHT5_HIF138-8 8 0.717529 1639.000000 1050.000000 2010.000000 1445.000000 1569.000000 798.000000 1710.040000 1048.500000 1928.460000 1538.270000 1529.580000 779.998000 3.208775 147.099085
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LIGHT5_HIF138-8 8 0.679868 3278.000000 1672.000000 3289.000000 2755.000000 2758.000000 1414.000000 3553.030000 1758.610000 3048.620000 2771.760000 3012.900000 1476.810000 3.927443 154.652406
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LIGHT5_HIF138-8 12 0.695087 1682.000000 618.000000 2088.000000 1403.000000 1796.000000 578.000000 1738.500000 673.896000 2094.420000 1423.120000 1916.500000 595.634000 5.099424 181.720251
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LIGHT5_HIF138-8 9 0.754694 2671.000000 1951.000000 3009.000000 2450.000000 2557.000000 2001.000000 2416.950000 1973.650000 3063.470000 2679.150000 2546.200000 1896.870000 4.222390 160.183004
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LIGHT5_HIF138-8 8 0.679208 7389.000000 5719.000000 7326.000000 6651.000000 7839.000000 5306.000000 7939.210000 5526.120000 7248.240000 6621.630000 7977.860000 4948.900000 6.348381 199.994585
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LIGHT5_HIF138-8 8 0.633057 6203.000000 3782.000000 5770.000000 5023.000000 5611.000000 3363.000000 6793.630000 3607.980000 6134.500000 4921.880000 5293.520000 3371.430000 2.799438 160.751639
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LIGHT5_HIF138-8 7 0.861122 7.000000 7.000000 7.000000 6.000000 6.000000 5.000000 7.494030 6.738430 6.454820 5.977480 5.954820 4.637930 13.145610 0.423067
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LIGHT5_HIF138-8 4 0.942523 23.000000 20.000000 21.000000 14.000000 15.000000 14.000000 24.245800 19.758700 21.927700 14.477700 15.994200 14.814000 21.394282 2.127139
* Row count is limited to 100.