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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LL12_LDHH
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LL12_LDHH_0_hours label:LL12_LDHH_4_hours label:LL12_LDHH_8_hours label:LL12_LDHH_12_hours label:LL12_LDHH_16_hours label:LL12_LDHH_20_hours label:LL12_LDHH_24_hours label:LL12_LDHH_28_hours label:LL12_LDHH_32_hours label:LL12_LDHH_36_hours label:LL12_LDHH_40_hours label:LL12_LDHH_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LL12_LDHH 12 0.480419 6.900420 7.893530 8.159590 8.395060 8.732230 7.897270 7.274810 9.447870 6.443610 10.201500 6.793510 9.213420 6.989967 0.194819
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LL12_LDHH 20 0.710774 13.255100 7.891760 11.031000 8.403000 12.635600 11.028100 10.602000 7.946420 9.066440 7.573330 13.619300 8.644820 13.058014 0.749701
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LL12_LDHH 19 0.817021 6.583100 7.730400 7.864590 10.153000 15.772600 32.479200 10.673800 7.980240 11.820400 14.031200 9.182230 17.577500 23.596641 2.875046
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LL12_LDHH 13 0.594185 6.903730 7.242400 8.088600 7.074360 6.148680 7.908220 5.494260 6.885590 7.414720 7.244490 8.381890 7.188210 6.006131 0.193800
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LL12_LDHH 3 0.467378 4.340760 5.221860 4.238260 4.298010 4.232970 3.909300 4.535390 4.426180 3.962990 5.121750 4.607120 4.270020 0.788990 0.061192
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LL12_LDHH 16 0.729591 8.204120 8.159340 12.451600 13.327100 14.598900 9.547060 10.138300 16.994500 11.395900 11.270800 30.097300 10.291500 3.551653 1.874698
TAIR:ATMG00710 - - - - TAIR9 244907_at LL12_LDHH 13 0.556404 3.878330 5.579840 6.027300 5.606860 6.702400 7.334840 5.559830 6.562740 7.680810 6.902720 4.342470 6.601910 7.157022 0.210260
TAIR:ATMG00720 - - - - TAIR9 244908_at LL12_LDHH 15 0.696829 4.290800 4.666000 4.680260 4.766860 4.847470 4.860110 4.030090 4.459650 4.273630 5.340380 7.031410 5.089840 9.374854 0.350047
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LL12_LDHH 13 0.833266 4.221130 4.135590 4.834430 5.901080 4.743040 3.046620 4.237850 3.605580 3.930220 5.596890 4.512210 3.254540 6.619174 0.424547
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LL12_LDHH 16 0.796596 5.918540 4.648670 4.738280 5.107230 6.046070 5.074390 5.147640 4.924750 6.185050 6.836450 5.279260 5.095230 4.527533 0.191586
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LL12_LDHH 14 0.689760 28.472400 26.859500 30.890400 26.801600 68.119700 54.153200 26.112800 24.904100 83.580700 83.313600 66.225400 82.728000 9.114848 10.407488
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LL12_LDHH 8 0.768051 3.265410 3.353450 4.330490 3.813040 4.119520 3.596320 3.781100 3.645830 4.960300 4.264540 4.065100 3.908540 5.221540 0.214158
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LL12_LDHH 14 0.491052 6.253120 5.859940 10.303300 8.321100 8.465190 8.622210 6.888520 6.154400 6.992790 5.612970 6.348780 6.872450 4.958973 0.267625
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LL12_LDHH 10 0.661274 4.579970 4.552990 5.533820 5.206750 4.864050 3.875310 3.995290 6.198060 4.453570 4.524600 5.064970 4.152100 9.626476 0.246933
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LL12_LDHH 20 0.522320 2.872860 2.634430 2.524450 2.879030 2.141230 2.858710 2.424410 2.810810 2.395160 2.563840 2.871830 3.092560 15.231752 0.065261
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LL12_LDHH 8 0.600351 3.746300 4.161790 4.749830 3.662160 4.364940 3.969560 3.597530 3.165240 4.344690 3.615320 3.664390 4.446750 6.127679 0.052021
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LL12_LDHH 22 0.497570 3.537100 3.251320 3.456060 3.619070 4.658180 3.347830 4.275960 4.852410 3.463550 3.462600 3.268490 4.015540 17.166641 0.088925
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LL12_LDHH 15 0.646168 32.200200 35.898400 37.939800 58.372800 37.715100 67.839900 31.036300 46.858900 49.458100 59.896400 75.036200 38.032300 8.308233 6.156307
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LL12_LDHH 17 0.636511 25.158100 23.874000 35.966000 46.810000 41.664600 57.357700 45.123600 29.813700 66.003800 25.206400 130.829000 42.103400 2.118499 9.872992
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LL12_LDHH 14 0.517178 6.762300 8.100000 9.626160 6.708500 7.665520 11.390100 6.655510 5.277810 9.724840 9.549910 6.961540 6.834550 5.899103 0.335817
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LL12_LDHH 18 0.821797 6.974140 6.455690 5.819430 9.585640 7.806510 9.049530 8.594700 7.376330 4.984400 8.113570 9.858890 10.865300 12.173126 0.935141
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LL12_LDHH 8 0.658436 8.767380 7.527290 16.881300 12.858300 9.140870 7.854350 6.098440 6.847550 8.894190 7.361560 8.737280 8.069790 4.362843 1.102324
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LL12_LDHH 19 0.713330 18.038900 20.535600 18.237900 16.964400 18.284100 23.547100 14.986600 14.377100 15.699000 20.830500 18.960200 21.967200 0.046454 1.003870
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LL12_LDHH 18 0.877391 10.978600 10.023800 7.797850 10.207800 13.763700 21.046500 9.015130 13.815300 9.622030 9.600410 22.756800 19.731800 12.669114 2.641373
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LL12_LDHH 13 0.237898 6.953080 7.172460 8.223840 6.017420 8.029070 6.498780 5.817910 6.573910 5.229780 6.755460 6.072020 7.068650 10.881388 0.035317
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LL12_LDHH 19 0.608824 6.399870 5.625320 6.705940 4.774430 7.388210 7.649870 5.998420 5.698750 6.714940 7.677880 6.256180 7.674610 0.273510 0.305618
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LL12_LDHH 16 0.566614 78.746800 77.597200 116.335000 91.309000 107.005000 111.492000 98.836900 105.322000 89.526300 152.101000 111.078000 135.788000 2.892752 7.605647
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LL12_LDHH 17 0.471044 3.382460 3.831790 3.524090 3.988630 3.601000 4.065630 3.576320 2.968590 3.042480 3.460340 3.242150 3.538180 12.028770 0.077945
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LL12_LDHH 21 0.730136 8.896530 6.687490 8.393300 13.775500 8.613990 22.326200 13.302800 9.854370 10.082300 9.089240 8.766520 12.520000 22.301694 1.375724
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LL12_LDHH 17 0.910608 1489.000000 1435.140000 1441.940000 1841.550000 1946.480000 2149.650000 1639.560000 1219.590000 1637.300000 1759.630000 1984.680000 1846.000000 10.735612 167.338985
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LL12_LDHH 16 0.444711 566.866000 603.382000 582.437000 1025.280000 590.711000 758.995000 607.650000 427.378000 376.637000 461.016000 594.017000 479.841000 9.764795 37.549414
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LL12_LDHH 13 0.573752 593.986000 642.984000 530.205000 1069.660000 428.002000 228.123000 264.889000 180.524000 349.167000 434.554000 485.164000 295.448000 6.991325 74.845535
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LL12_LDHH 16 0.786699 7301.810000 6476.070000 7586.820000 7257.400000 7823.770000 8529.900000 8152.470000 6684.210000 7695.260000 7504.560000 8145.400000 8010.870000 11.910255 293.633344
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LL12_LDHH 17 0.708284 2277.850000 1787.730000 2322.610000 2615.150000 2726.880000 2997.250000 3087.470000 2174.660000 2711.750000 2435.030000 2756.420000 2414.740000 11.408872 138.672597
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LL12_LDHH 17 0.859953 376.200000 266.478000 332.334000 364.014000 393.452000 516.919000 354.762000 193.147000 358.843000 417.380000 558.441000 451.245000 11.110126 57.057589
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LL12_LDHH 17 0.910326 132.527000 128.238000 104.140000 126.320000 169.288000 153.137000 109.519000 89.162100 98.322000 168.985000 166.442000 139.218000 10.632289 16.044813
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LL12_LDHH 15 0.509027 239.490000 160.207000 192.725000 161.956000 166.731000 157.230000 124.382000 117.464000 250.465000 198.209000 229.744000 241.477000 8.636774 8.423185
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LL12_LDHH 14 0.599419 1622.880000 1673.030000 1679.110000 1525.540000 1812.230000 1838.630000 1603.090000 1204.610000 2772.280000 2597.710000 2853.020000 2704.970000 8.867547 198.872649
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LL12_LDHH 12 0.547702 6.583460 6.611040 7.553590 8.900350 6.246120 6.873500 4.934830 5.523900 5.573960 6.459260 5.655840 7.199610 6.716317 0.275840
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LL12_LDHH 20 0.566686 3.402900 4.313290 4.852690 4.048430 3.817470 4.271550 3.780750 3.697570 3.791540 3.857730 4.022590 5.031800 2.401755 0.043575
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LL12_LDHH 15 0.648009 10.367100 10.319300 13.269200 20.749800 14.523900 16.769400 11.602400 14.031000 14.882800 10.823800 18.751600 14.778600 3.281045 1.361279
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LL12_LDHH 22 0.658194 7.104220 9.579710 5.740080 6.841920 7.864880 9.295660 7.025630 7.212620 6.513950 5.579630 7.224910 6.921150 16.445405 0.412073
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LL12_LDHH 20 0.755545 3.958670 4.302630 5.825090 6.073430 3.216220 7.284400 4.567560 4.007850 4.438290 5.210990 5.270260 6.910910 0.926479 0.305404
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LL12_LDHH 20 0.533142 5.507320 5.555230 4.855590 5.264920 4.715100 5.954660 4.556470 4.624960 4.718450 4.642820 5.068870 5.170600 15.231962 0.125745
TAIR:ATMG00150 - - - - TAIR9 244949_at LL12_LDHH 7 0.407485 3.549060 4.168960 4.869500 3.559020 4.086270 3.280440 4.369830 4.042980 3.223920 5.112520 3.690510 3.692350 2.607384 0.144703
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LL12_LDHH 17 0.756219 14.533800 12.576800 27.140300 18.915200 27.467700 36.584500 12.662800 15.778700 14.911000 21.386500 52.424500 19.265600 10.035309 5.415952
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LL12_LDHH 17 0.844877 49.553100 30.716000 29.324100 79.702300 101.845000 85.769300 56.525700 52.331800 46.752000 101.752000 109.436000 175.634000 11.347712 22.963286
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LL12_LDHH 15 0.457974 3.985280 4.302490 3.840320 4.670250 4.075480 4.582360 4.009280 3.158590 5.259920 3.926980 4.171860 4.061810 5.123240 0.104733
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LL12_LDHH 10 0.674174 5.456740 4.190550 6.887320 6.253810 5.488150 3.736810 4.402460 5.439250 5.628440 6.585690 5.758310 6.888120 5.808581 0.395000
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LL12_LDHH 20 0.542920 5.168610 6.407670 5.795660 6.472820 4.676000 8.593430 7.594920 6.245970 6.641270 7.827700 6.542300 7.155450 13.815972 0.152326
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LL12_LDHH 13 0.865531 3.195680 3.029260 4.107010 4.091350 4.290800 3.115780 3.543330 3.304850 3.435920 4.752970 4.284160 3.282560 6.935637 0.326241
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LL12_LDHH 16 0.761239 5.119830 5.136900 4.854250 4.576630 5.903540 4.984470 4.381480 3.895240 4.536440 5.040560 5.721840 4.316170 9.739021 0.217687
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LL12_LDHH 16 0.613450 6.513140 5.150980 6.714120 5.496300 7.372290 5.698520 5.402180 4.434020 5.225960 6.794080 5.673690 6.515950 9.912049 0.315559
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LL12_LDHH 17 0.594499 4.101100 4.569010 4.984610 4.484710 5.191870 4.715540 4.078450 3.665530 4.053470 3.099300 4.357020 5.218910 12.760980 0.162764
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LL12_LDHH 14 0.383312 10.309600 11.233200 10.585300 9.400240 20.235800 10.458100 15.746500 19.123600 34.707400 24.391700 29.177800 29.024200 7.975320 1.933633
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LL12_LDHH 23 0.672865 2252.580000 1781.990000 1907.010000 2365.380000 2294.980000 2549.420000 2617.850000 2332.020000 1752.760000 1645.100000 1583.400000 1447.290000 17.708194 95.798996
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LL12_LDHH 15 0.806502 3899.870000 3093.270000 3738.560000 4344.880000 3972.650000 3982.230000 3061.240000 2765.980000 4308.400000 4426.740000 5437.690000 4676.920000 9.180463 406.183224
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LL12_LDHH 16 0.731386 2519.590000 2274.320000 2555.480000 3633.150000 2916.330000 3892.400000 2529.480000 2265.710000 3011.180000 2836.200000 3164.530000 2953.640000 9.838854 241.102860
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LL12_LDHH 16 0.477650 6332.510000 6231.110000 6044.600000 6254.630000 6583.120000 5980.740000 5543.940000 6020.670000 5686.830000 5449.590000 6119.190000 5913.660000 12.204340 44.338979
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LL12_LDHH 22 0.411535 1442.630000 1290.380000 1344.930000 1414.410000 1531.370000 1365.150000 1235.280000 1412.610000 1192.640000 1056.110000 1313.730000 1271.140000 21.221323 23.271040
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LL12_LDHH 17 0.797544 525.281000 310.262000 482.185000 584.396000 790.374000 725.182000 487.191000 462.112000 513.783000 472.311000 626.479000 508.557000 10.803013 66.930421
TAIR:ATCG00600 - - - - TAIR9 244966_at LL12_LDHH 19 0.435201 163.128000 87.118100 61.133100 190.660000 102.452000 108.460000 96.776900 86.542900 62.710400 63.822500 98.549200 46.597400 23.449502 4.270047
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LL12_LDHH 17 0.833576 4865.920000 3533.540000 4319.320000 4373.010000 4946.130000 5318.510000 4461.750000 3759.740000 4815.310000 5442.060000 4839.910000 5092.400000 10.762992 286.921809
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LL12_LDHH 20 0.890820 2370.520000 1719.120000 2003.260000 2754.310000 2973.650000 3253.030000 3213.660000 2575.370000 2340.590000 2444.890000 2568.820000 2850.160000 12.921320 223.504683
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LL12_LDHH 20 0.851196 1236.160000 697.231000 935.567000 1365.070000 1430.220000 1722.110000 1588.790000 1085.130000 1027.080000 906.368000 1125.660000 1118.140000 13.530145 129.404312
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LL12_LDHH 17 0.378325 533.888000 283.310000 291.100000 422.153000 214.892000 212.899000 177.132000 118.157000 263.890000 262.155000 416.155000 280.323000 2.620177 15.650836
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LL12_LDHH 18 0.921446 2911.430000 2494.200000 2543.120000 2642.390000 3325.710000 3298.860000 2615.500000 2428.870000 2701.920000 3192.620000 3597.210000 3465.390000 11.319938 258.045269
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LL12_LDHH 12 0.583987 2125.520000 1387.290000 1466.380000 2210.750000 1081.500000 1502.700000 1130.020000 821.107000 1334.440000 1731.120000 1378.800000 1465.460000 7.765839 67.838566
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LL12_LDHH 12 0.532313 392.167000 309.968000 374.419000 535.472000 220.280000 371.464000 355.026000 272.100000 219.391000 319.052000 207.481000 206.360000 11.032603 12.694806
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LL12_LDHH 21 0.756977 84.361800 48.146300 58.359900 72.110200 59.879300 76.943400 61.068600 60.926100 44.585500 51.660800 68.110000 101.716000 14.094480 8.002627
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LL12_LDHH 20 0.788524 3187.630000 2539.050000 2874.240000 3259.320000 3200.150000 3900.530000 3229.040000 2977.770000 2860.270000 2841.550000 2885.110000 3054.170000 13.500123 139.720573
TAIR:ATCG00720 - - - - PPDB 244976_at LL12_LDHH 20 0.780281 6486.390000 5755.940000 6686.000000 6457.310000 6919.430000 7480.900000 7211.480000 6354.990000 6509.240000 5634.530000 6645.460000 6596.580000 14.208332 201.318944
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LL12_LDHH 13 0.324881 183.338000 96.428900 96.124000 218.219000 69.980100 53.290300 22.306500 21.542500 34.244400 29.893000 114.055000 62.577400 7.890199 7.835802
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LL12_LDHH 17 0.731074 979.820000 796.423000 945.131000 1103.200000 1151.170000 1157.150000 943.557000 804.675000 1019.450000 1024.710000 874.784000 1303.060000 11.201356 67.909254
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LL12_LDHH 15 0.848471 1243.620000 949.089000 1411.560000 1237.440000 1396.580000 1639.680000 1127.060000 817.951000 1435.640000 1524.040000 1502.400000 1822.290000 10.451109 137.182658
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LL12_LDHH 15 0.784256 949.778000 604.498000 982.179000 730.837000 907.993000 943.907000 778.219000 522.402000 832.465000 999.890000 1023.740000 1183.890000 11.040084 83.300267
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LL12_LDHH 16 0.471368 519.289000 300.710000 382.430000 396.200000 383.247000 415.043000 388.407000 390.720000 531.602000 426.307000 549.347000 654.349000 12.468012 28.832810
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LL12_LDHH 14 0.622615 430.505000 359.230000 453.474000 410.179000 385.045000 505.885000 334.984000 204.917000 878.508000 828.561000 961.379000 967.315000 9.014357 93.901535
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LL12_LDHH 18 0.753127 1450.380000 892.465000 935.471000 1025.650000 1548.250000 2024.780000 1007.020000 801.537000 1907.780000 1547.290000 2423.530000 2214.870000 11.338959 269.181807
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LL12_LDHH 20 0.709967 2133.100000 1366.510000 2204.560000 1841.030000 2573.960000 3038.120000 2966.170000 2075.900000 2384.610000 2416.200000 2302.650000 2676.540000 13.149000 193.414497
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LL12_LDHH 19 0.819999 2103.070000 1565.070000 1914.800000 1694.540000 2353.460000 2714.660000 2325.110000 1732.590000 1854.010000 2134.560000 2095.870000 2295.570000 13.150729 180.851340
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LL12_LDHH 18 0.642927 1387.930000 1036.600000 1693.350000 1233.000000 2266.150000 2270.460000 1974.310000 1781.680000 1829.730000 2074.310000 1831.940000 2293.200000 11.877088 167.546455
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LL12_LDHH 19 0.539362 4436.190000 4246.870000 4672.590000 3832.780000 5613.860000 5872.000000 5124.770000 5466.710000 6556.200000 5669.470000 5632.090000 6466.710000 0.254209 191.113934
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LL12_LDHH 22 0.596521 2875.910000 2277.570000 2524.040000 2664.270000 2983.200000 3863.000000 2814.010000 2999.080000 3171.610000 2878.300000 2326.450000 2894.990000 21.672594 96.396813
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LL12_LDHH 13 0.527834 47.086100 48.291600 22.354400 90.773700 26.798500 19.888600 17.968500 16.367100 18.696300 24.745300 39.970500 34.598100 7.115084 3.898401
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LL12_LDHH 12 0.518620 30.515600 40.840100 25.119300 83.942000 27.297400 29.573900 21.434200 19.753300 21.406100 16.160000 22.217800 16.981700 6.843933 3.638274
* Row count is limited to 100.